Atom Nomenclature for 8RC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8RC

Atom Name (V3) Atom Name (V2)
C12 C1
C14 C2
C11 C3
C15 C4
C13 C5
C10 C6
C1 C7
C5 C8
C2 C9
C4 C10
C29 C11
C38 C12
C18 C13
C20 C14
C37 C15
C17 C16
C21 C17
C36 C18
C23 C19
C27 C20
C24 C21
C26 C22
C34 C23
C19 C24
C33 C25
C32 C26
C41 C27
C28 C28
C9 C29
C40 C30
N6 N1
N3 N2
N16 N3
N35 N4
N22 N5
N25 N6
N31 N7
N7 N8
O30 O1
O39 O2
O8 O3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H44 H44
H45 H45
H46 H46