PDB Chemical Component 8PT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8PT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N9 C8 1.332 1.303
N9 C4 1.342 1.347
C8 N7 1.362 1.352
C4 N3 1.353 1.337
C4 C5 1.370 1.404
N3 C2 1.356 1.322
N7 C5 1.317 1.380
C5 C6 1.352 1.397
C2 N2 1.332 1.387
C2 N1 1.310 1.327
N2 CAM 1.376 1.401
C6 N1 1.311 1.329
C6 N6 1.341 1.385
CAS CAR 1.386 1.507
CAM CAR 1.407 1.389
CAM CAN 1.409 1.389
N6 CAK 1.416 1.464
CAK CAY 1.525 1.529
CAK CAU 1.562 1.530
CAR CAQ 1.380 1.381
CAN CAO 1.386 1.380
CAY CAX 1.482 1.529
CAU CAV 1.541 1.530
CAQ CAP 1.384 1.388
CAX CAW 1.535 1.530
CAO CAP 1.398 1.389
CAP NAT 1.341 1.400
CAV CAW 1.557 1.529
NAT CAZ 1.475 1.470
NAT CBD 1.483 1.470
CAZ CBA 1.526 1.531
CBD CBC 1.536 1.531
CBA OBB 1.447 1.430
CBC OBB 1.426 1.430
C8 H1 1.080 1.081
CAU H2 1.100 1.090
CAV H3 1.100 1.089
CAW H4 1.100 1.089
CAW H5 1.100 1.090
CAX H6 1.099 1.090
CAX H7 1.100 1.091
CAY H8 1.100 1.090
CAY H9 1.100 1.090
CAK H10 1.100 1.090
N6 H11 1.000 0.971
N7 H12 1.000 0.970
N2 H14 1.000 0.969
CAS H15 1.100 1.090
CAS H16 1.100 1.090
CAS H17 1.100 1.089
CAQ H18 1.080 1.080
CAN H19 1.080 1.080
CAO H20 1.080 1.080
CAZ H21 1.100 1.090
CAZ H22 1.100 1.090
CBA H23 1.100 1.090
CBA H24 1.100 1.090
CBC H25 1.100 1.090
CBC H26 1.099 1.090
CBD H27 1.100 1.090
CBD H28 1.100 1.090
CAU H13 1.100 1.091
CAV H29 1.100 1.090

Bond Angles for 8PT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N9 C8 H1 125.0 124.9
N9 C4 N3 129.6 134.4
N7 C8 H1 125.0 124.9
C8 N7 H12 126.2 126.4
C5 C4 N3 120.7 118.8
C4 N3 C2 118.0 120.5
C4 C5 C6 118.4 118.7
N3 C2 N2 127.1 118.8
C5 C6 N1 119.7 118.6
C5 C6 N6 131.0 120.7
N1 C2 N2 112.5 118.9
C2 N2 CAM 118.1 120.0
C2 N2 H14 121.0 120.0
C6 N1 C2 122.7 121.1
N2 CAM CAR 117.1 120.0
N2 CAM CAN 123.7 120.0
CAM N2 H14 120.9 120.0
N6 C6 N1 109.2 120.7
C6 N6 CAK 132.3 120.1
C6 N6 H11 103.5 120.0
CAS CAR CAQ 118.0 120.0
CAR CAM CAN 119.2 120.0
CAM CAR CAQ 119.6 120.0
CAM CAN CAO 120.4 120.0
CAM CAN H19 119.8 120.0
N6 CAK H10 111.4 109.5
CAK CAY H8 109.4 109.5
CAK CAY H9 109.5 109.4
CAK CAU H2 107.2 109.5
CAK CAU H13 107.1 109.4
CAR CAQ CAP 121.2 120.0
CAR CAQ H18 119.4 120.0
CAN CAO CAP 119.6 120.0
CAO CAN H19 119.8 120.1
CAN CAO H20 120.2 119.9
CAY CAX H6 110.8 109.5
CAY CAX H7 110.8 109.5
CAU CAV CAW 116.2 109.5
CAV CAU H2 107.1 109.5
CAU CAV H3 107.8 109.5
CAV CAU H13 107.2 109.5
CAU CAV H29 107.8 109.5
CAQ CAP CAO 120.0 120.0
CAQ CAP NAT 118.3 120.0
CAP CAQ H18 119.4 120.0
CAX CAW H4 108.2 109.5
CAX CAW H5 108.2 109.5
CAO CAP NAT 121.7 120.0
CAP CAO H20 120.2 120.0
CAP NAT CAZ 118.2 111.0
CAP NAT CBD 121.3 111.0
CAW CAV H3 107.7 109.5
CAV CAW H4 108.2 109.5
CAV CAW H5 108.3 109.5
CAW CAV H29 107.8 109.5
CAZ NAT CBD 120.5 110.7
NAT CAZ CBA 106.0 109.3
NAT CAZ H21 110.3 109.5
NAT CAZ H22 110.3 109.5
NAT CBD CBC 113.6 109.2
NAT CBD H27 108.5 109.5
NAT CBD H28 108.4 109.5
CAZ CBA OBB 108.3 109.2
CBA CAZ H21 110.3 109.5
CBA CAZ H22 110.3 109.4
CAZ CBA H23 109.8 109.5
CAZ CBA H24 109.8 109.5
CBD CBC H25 108.9 109.5
CBD CBC H26 108.9 109.5
OBB CBA H23 109.7 109.5
OBB CBA H24 109.8 109.5
H2 CAU H13 109.5 109.5
H3 CAV H29 109.5 109.4
H4 CAW H5 109.5 109.4
H6 CAX H7 109.5 109.5
H8 CAY H9 109.5 109.4
H15 CAS H16 109.4 109.5
H15 CAS H17 109.5 109.5
H16 CAS H17 109.5 109.5
H21 CAZ H22 109.5 109.5
H23 CBA H24 109.5 109.6
H25 CBC H26 109.5 109.5
H27 CBD H28 109.4 109.6

Torsion Angles for 8PT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8 N9 C4 N3 180.6 180.2
N7 C8 N9 H1 180.0 179.7
N9 C8 N7 H12 179.5 180.1
C5 C4 N9 N3 178.4 180.2
N9 C4 N3 C2 178.6 180.3
N9 C8 N7 H1 180.0 180.3
N3 C4 C5 C6 358.8 359.9
C4 N3 C2 N2 179.6 180.0
N9 C4 C5 N3 181.4 179.9
C5 C4 N3 C2 0.3 0.1
C4 C5 C6 N1 1.0 0.1
C4 C5 C6 N6 179.1 180.1
N1 C2 N3 N2 181.1 179.9
N3 C2 N2 CAM 182.1 354.1
N3 C2 N2 H14 2.1 174.0
N7 C5 C4 N3 179.2 179.9
C6 C5 C4 N3 358.8 359.9
C5 C6 N1 C2 0.0 359.9
N6 C6 C5 N1 178.1 180.0
C5 C6 N6 CAK 11.1 180.0
C5 C6 N6 H11 134.0 360.0
C6 N1 C2 N2 180.0 180.0
C2 N2 CAM CAR 138.8 155.2
C2 N2 CAM CAN 318.6 334.9
CAM N2 C2 H14 180.0 180.0
C4 N3 C2 N1 0.7 359.9
N3 C2 N1 N2 179.1 180.1
N1 C2 N2 CAM 1.1 174.1
N1 C2 N2 H14 181.1 354.1
N6 C6 N1 C2 181.6 180.0
C2 N2 CAM H14 180.0 180.0
CAR CAM N2 CAN 180.1 180.3
N2 CAM CAR CAQ 179.5 179.9
N2 CAM CAN CAO 180.9 180.0
N2 CAM CAN H19 0.9 0.0
C5 C6 N1 N6 178.5 180.0
N1 C6 N6 CAK 189.3 0.0
N1 C6 N6 H11 312.2 180.0
C5 C6 N6 N1 181.8 180.0
C6 N6 CAK H10 359.8 325.0
CAS CAR CAM CAN 179.2 180.3
CAM CAR CAS CAQ 180.5 180.0
CAS CAR CAQ CAP 180.3 180.0
CAS CAR CAQ H18 0.3 359.9
N2 CAM CAR CAN 179.9 179.7
CAR CAM N2 H14 318.8 335.2
CAS CAR CAM CAQ 179.5 180.0
CAR CAM CAN CAO 0.7 359.7
CAR CAM CAN H19 180.8 179.7
CAM CAR CAQ CAP 359.8 0.0
CAM CAR CAQ H18 179.9 180.0
N2 CAM CAN CAR 180.1 180.3
CAN CAM N2 H14 138.6 154.9
CAN CAM CAR CAQ 359.6 0.2
CAM CAN CAO CAP 359.4 0.0
CAO CAN CAM H19 180.0 180.0
CAM CAN CAO H20 179.4 180.0
CAK N6 C6 N1 189.3 0.0
C6 N6 CAK H11 122.9 179.9
N6 CAK CAY H8 67.0 60.0
N6 CAK CAY H9 187.0 300.0
N6 CAK CAU H2 208.7 60.0
N6 CAK CAU H13 326.1 300.1
C6 N6 CAK CAY 237.7 205.0
CAY CAK CAU H2 89.6 300.0
CAY CAK CAU H13 207.0 180.0
CAK CAY CAX H6 41.4 300.0
CAK CAY CAX H7 163.1 180.0
H8 CAY CAK H9 240.0 120.0
C6 N6 CAK CAU 120.2 85.0
CAV CAU CAK H2 238.7 120.0
CAK CAU CAV H3 135.4 60.0
CAV CAU CAK H13 121.3 240.0
CAK CAU CAV H29 253.5 180.0
H2 CAU CAK H13 242.6 120.0
CAQ CAR CAM CAN 359.6 0.2
CAR CAQ CAP CAO 0.3 359.8
CAR CAQ CAP NAT 181.0 180.0
CAP CAQ CAR H18 180.0 180.0
CAM CAN CAO H19 180.0 180.0
CAQ CAP CAO CAN 0.1 0.2
CAN CAO CAP NAT 179.3 180.0
CAP CAO CAN H20 180.0 180.1
CAY CAX CAW H4 176.4 180.0
CAY CAX CAW H5 295.0 60.0
H6 CAX CAY H7 238.3 120.0
CAK CAU CAV H2 121.3 240.0
CAK CAU CAV H13 238.7 120.0
CAW CAV CAU H3 239.1 240.0
CAU CAV CAW H4 212.9 180.0
CAU CAV CAW H5 94.3 300.0
CAW CAV CAU H29 121.0 120.0
H2 CAU CAV H13 117.4 240.0
H3 CAV CAU H29 241.9 240.0
CAR CAQ CAP H18 180.0 180.0
CAN CAO CAP CAQ 0.1 0.2
CAO CAP CAQ NAT 179.3 179.8
CAQ CAP CAO H20 180.1 180.3
CAQ CAP NAT CAZ 51.8 180.0
CAQ CAP NAT CBD 232.2 56.4
CAX CAW CAV H3 212.6 300.0
CAV CAW CAX H4 239.3 120.0
CAV CAW CAX H5 120.7 240.0
CAX CAW CAV H29 94.5 180.0
H4 CAW CAX H5 241.4 120.0
CAP CAO CAN H19 179.4 180.1
CAN CAO CAP H20 180.0 179.9
CAQ CAP CAO NAT 180.7 180.2
CAO CAP CAQ H18 180.3 179.8
CAO CAP NAT CAZ 232.6 0.2
CAO CAP NAT CBD 53.0 236.6
CAQ CAP NAT CAO 179.3 179.8
NAT CAP CAQ H18 1.0 0.0
NAT CAP CAO H20 359.3 0.0
CAZ NAT CAP CBD 179.6 123.6
CAP NAT CAZ CBA 182.1 177.6
CAP NAT CAZ H21 301.6 297.6
CAP NAT CAZ H22 62.7 57.7
CAP NAT CBD CBC 218.7 182.4
CAP NAT CBD H27 339.3 302.3
CAP NAT CBD H28 98.1 62.5
CAW CAV CAU H2 253.2 60.0
CAU CAV CAW H3 121.0 120.0
CAW CAV CAU H13 135.8 180.0
CAU CAV CAW H29 239.0 240.0
CAX CAW CAV H4 120.7 239.9
CAX CAW CAV H5 239.3 120.0
H3 CAV CAW H29 118.1 120.0
H4 CAW CAV H5 118.6 240.0
CAP NAT CAZ CBD 180.4 236.3
CAZ NAT CBD CBC 39.1 58.6
CAZ NAT CBD H27 159.7 178.5
CAZ NAT CBD H28 278.5 298.7
NAT CAZ CBA OBB 304.5 56.9
CBA CAZ NAT H21 240.5 240.0
CBA CAZ NAT H22 119.5 119.9
NAT CAZ CBA H23 64.3 176.8
NAT CAZ CBA H24 184.6 297.0
H21 CAZ NAT H22 238.9 239.9
CAP NAT CBD CAZ 179.6 123.8
CBD NAT CAZ CBA 1.7 301.3
CBD NAT CAZ H21 121.2 61.3
CBD NAT CAZ H22 242.3 181.4
NAT CBD CBC H25 95.6 183.2
NAT CBD CBC H26 215.0 63.1
H27 CBD NAT H28 241.3 239.8
CBA CAZ NAT CBD 1.7 301.3
NAT CAZ CBA H21 119.5 120.0
NAT CAZ CBA H22 240.5 240.1
OBB CBA CAZ H23 240.2 240.1
OBB CBA CAZ H24 119.8 119.9
H21 CAZ CBA H22 121.1 120.0
H23 CBA CAZ H24 239.6 239.9
NAT CBD CBC H27 120.6 119.9
NAT CBD CBC H28 239.4 240.1
H25 CBC CBD H26 240.7 120.1
OBB CBA CAZ H21 185.0 296.9
OBB CBA CAZ H22 63.9 176.8
CAZ CBA OBB H23 119.8 119.9
CAZ CBA OBB H24 240.2 240.1
H23 CBA OBB H24 120.4 120.2
NAT CBD CBC OBB 335.3 303.2
CBC OBB CBA H23 313.5 181.4
CBC OBB CBA H24 193.2 61.2
H1 C8 N7 H12 359.5 359.8
CAK CAU H2 H13 115.8 240.0
H2 CAU CAV CAW 253.2 60.0
H2 CAU CAV H3 14.1 180.0
CAV CAU H2 H13 244.1 120.0
H2 CAU CAV H29 132.2 300.0
CAU CAV H3 CAW 233.9 240.0
H3 CAV CAU H2 14.1 180.0
H3 CAV CAU H13 256.7 300.1
CAU CAV H3 H29 117.0 120.0
H3 CAV CAW H4 91.9 60.0
H3 CAV CAW H5 333.3 180.0
CAW CAV H3 H29 243.0 240.0
CAX CAW H4 H5 117.7 240.0
H4 CAW CAV H3 91.9 60.0
CAV CAW H4 H5 242.2 120.0
H4 CAW CAV H29 333.9 300.0
CAX CAW H5 H4 242.3 120.0
H5 CAW CAV H3 333.3 180.0
CAV CAW H5 H4 117.8 240.0
H5 CAW CAV H29 215.2 60.0
CAY CAX H6 H7 122.5 239.9
H6 CAX CAW H4 57.3 300.0
H6 CAX CAW H5 175.9 180.0
CAY CAX H7 H6 237.5 120.0
H7 CAX CAW H4 295.5 59.9
H7 CAX CAW H5 54.1 300.0
CAK CAY H8 H9 120.0 240.0
H8 CAY CAX H6 281.4 60.0
H8 CAY CAX H7 43.1 300.0
CAK CAY H9 H8 240.0 120.0
H9 CAY CAX H6 161.4 180.0
H9 CAY CAX H7 283.1 60.0
H10 CAK CAY H8 304.0 300.0
H10 CAK CAY H9 64.0 180.0
H10 CAK CAU H2 330.4 180.0
H10 CAK CAU H13 87.8 60.1
H11 N6 C6 N1 312.2 180.0
C6 N6 H11 CAK 219.7 180.1
H11 N6 CAK H10 236.9 145.1
H12 N7 C8 H1 359.5 359.8
C2 N2 H14 CAM 180.0 180.0
H14 N2 CAM CAR 318.8 335.2
H14 N2 CAM CAN 138.6 154.9
H15 CAS CAR CAQ 269.8 270.0
H16 CAS H15 H17 120.0 120.1
H16 CAS CAR CAQ 29.8 30.0
H15 CAS H16 H17 240.0 239.9
H17 CAS CAR CAQ 149.8 150.0
H15 CAS H17 H16 120.0 120.0
CAR CAQ H18 CAP 180.0 180.0
H18 CAQ CAP CAO 180.3 179.8
H18 CAQ CAP NAT 1.0 0.0
CAM CAN H19 CAO 180.0 180.0
H19 CAN CAO CAP 179.4 180.1
H19 CAN CAO H20 359.4 0.0
CAN CAO H20 CAP 180.0 180.1
H20 CAO CAN H19 359.4 0.0
H20 CAO CAP NAT 359.3 0.0
H21 CAZ NAT CBD 121.2 61.3
NAT CAZ H21 CBA 243.2 240.2
NAT CAZ H21 H22 121.6 120.1
H21 CAZ CBA OBB 185.0 296.9
CBA CAZ H21 H22 238.4 240.0
H21 CAZ CBA H23 304.8 56.8
H21 CAZ CBA H24 65.2 177.0
H22 CAZ NAT CBD 242.3 181.4
NAT CAZ H22 CBA 116.8 119.8
NAT CAZ H22 H21 238.4 239.9
H22 CAZ CBA OBB 63.9 176.8
CBA CAZ H22 H21 121.6 120.1
H22 CAZ CBA H23 183.7 296.8
H22 CAZ CBA H24 304.1 56.9
CAZ CBA H23 OBB 241.1 240.3
H23 CBA CAZ H21 304.8 56.8
H23 CBA CAZ H22 183.7 296.8
CAZ CBA H23 H24 120.5 120.1
OBB CBA H23 H24 239.5 239.8
CAZ CBA H24 OBB 118.9 119.7
H24 CBA CAZ H21 65.2 177.0
H24 CBA CAZ H22 304.1 56.9
CAZ CBA H24 H23 239.5 239.9
OBB CBA H24 H23 120.5 120.2
CBD CBC H25 H26 119.0 239.9
CBD CBC H26 H25 241.0 120.0
NAT CBD H27 CBC 236.2 240.3
NAT CBD H27 H28 118.1 120.1
H27 CBD CBC H25 335.0 63.3
H27 CBD CBC H26 94.3 303.2
NAT CBD H28 CBC 123.8 119.7
NAT CBD H28 H27 241.9 239.9
H28 CBD CBC H25 216.3 303.1
H28 CBD CBC H26 335.6 183.0
CAK CAU H13 H2 244.1 120.0
H13 CAU CAV CAW 135.8 180.0
CAV CAU H13 H2 115.8 240.0
H13 CAU CAV H3 256.7 300.1
H13 CAU CAV H29 14.8 60.0
CAU CAV H29 CAW 126.1 120.0
H29 CAV CAU H2 132.2 300.0
CAU CAV H29 H3 243.0 240.0
H29 CAV CAU H13 14.8 60.0
CAW CAV H29 H3 116.9 120.0
H29 CAV CAW H4 333.9 300.0
H29 CAV CAW H5 215.2 60.0