Atom Nomenclature for 8PC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8PC

Atom Name (V3) Atom Name (V2)
CL1 CL1
C17 C17
C16 C16
C15 C15
CL2 CL2
C14 C14
C19 C19
C22 C22
O13 O13
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C1 C1
O22 O22
C7 C7
C23 C23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
H16 H16
H19 H19
H22 H22
H3 H3
H4 H4
H6 H6
HO22 HO22
H71 1H7
H72 2H7
H25 H25
H26 H26
H27 H27
H28 H28