PDB Chemical Component 8OL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8OL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C28 |
C25 |
1.538 |
1.530 |
| C27 |
C25 |
1.535 |
1.530 |
| C26 |
C25 |
1.544 |
1.530 |
| C25 |
O24 |
1.457 |
1.429 |
| O24 |
C23 |
1.445 |
1.429 |
| C23 |
C13 |
1.550 |
1.530 |
| F22 |
C03 |
1.364 |
1.351 |
| C16 |
C17 |
1.567 |
1.530 |
| C16 |
N15 |
1.489 |
1.456 |
| C13 |
C14 |
1.479 |
1.505 |
| C13 |
N11 |
1.462 |
1.471 |
| C07 |
C04 |
1.564 |
1.507 |
| C07 |
C08 |
1.537 |
1.530 |
| C03 |
C04 |
1.395 |
1.384 |
| C03 |
C02 |
1.402 |
1.384 |
| C04 |
C05 |
1.395 |
1.382 |
| C02 |
C01 |
1.390 |
1.384 |
| C17 |
N11 |
1.463 |
1.472 |
| N15 |
C14 |
1.451 |
1.334 |
| C14 |
O18 |
1.191 |
1.213 |
| N11 |
C10 |
1.501 |
1.348 |
| C05 |
C06 |
1.399 |
1.384 |
| C01 |
C06 |
1.395 |
1.386 |
| C01 |
F21 |
1.367 |
1.351 |
| C06 |
F20 |
1.368 |
1.352 |
| C10 |
C09 |
1.546 |
1.507 |
| C10 |
O12 |
1.189 |
1.214 |
| C09 |
C08 |
1.542 |
1.530 |
| C08 |
N19 |
1.445 |
1.469 |
| C13 |
H131 |
1.100 |
1.090 |
| C17 |
H171 |
1.100 |
1.090 |
| C17 |
H172 |
1.100 |
1.090 |
| C26 |
H1 |
1.100 |
1.090 |
| C26 |
H2 |
1.100 |
1.090 |
| C26 |
H3 |
1.100 |
1.091 |
| C28 |
H4 |
1.100 |
1.089 |
| C28 |
H5 |
1.100 |
1.090 |
| C28 |
H6 |
1.100 |
1.090 |
| C02 |
H021 |
1.080 |
1.080 |
| C05 |
H051 |
1.080 |
1.080 |
| C07 |
H072 |
1.100 |
1.090 |
| C07 |
H071 |
1.100 |
1.089 |
| C08 |
H7 |
1.100 |
1.090 |
| C09 |
H091 |
1.100 |
1.090 |
| C09 |
H092 |
1.100 |
1.090 |
| N15 |
H8 |
1.000 |
0.970 |
| C16 |
H162 |
1.100 |
1.091 |
| C16 |
H161 |
1.100 |
1.090 |
| N19 |
H10 |
1.000 |
1.008 |
| N19 |
H9 |
1.000 |
1.009 |
| C23 |
H232 |
1.100 |
1.090 |
| C23 |
H231 |
1.100 |
1.090 |
| C27 |
H12 |
1.100 |
1.089 |
| C27 |
H13 |
1.100 |
1.090 |
| C27 |
H14 |
1.100 |
1.090 |
Bond Angles for 8OL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C26 |
C25 |
C28 |
109.6 |
109.4 |
| C28 |
C25 |
O24 |
108.0 |
109.5 |
| C25 |
C28 |
H4 |
109.5 |
109.5 |
| C25 |
C28 |
H5 |
109.4 |
109.5 |
| C25 |
C28 |
H6 |
109.5 |
109.5 |
| C26 |
C25 |
O24 |
108.5 |
109.5 |
| C25 |
C26 |
H1 |
109.5 |
109.5 |
| C25 |
C26 |
H2 |
109.5 |
109.5 |
| C25 |
C26 |
H3 |
109.5 |
109.5 |
| O24 |
C23 |
H232 |
108.9 |
109.5 |
| O24 |
C23 |
H231 |
108.9 |
109.5 |
| C23 |
C13 |
H131 |
110.1 |
109.7 |
| C16 |
C17 |
H171 |
108.0 |
109.7 |
| C16 |
C17 |
H172 |
108.0 |
109.8 |
| C16 |
N15 |
H8 |
120.4 |
117.7 |
| N11 |
C13 |
C14 |
110.5 |
108.9 |
| C13 |
C14 |
O18 |
120.6 |
118.5 |
| C14 |
C13 |
H131 |
111.1 |
109.6 |
| C13 |
N11 |
C17 |
120.0 |
117.3 |
| N11 |
C13 |
H131 |
111.3 |
109.6 |
| C07 |
C08 |
N19 |
109.9 |
109.5 |
| C08 |
C07 |
H072 |
110.0 |
109.5 |
| C08 |
C07 |
H071 |
109.9 |
109.5 |
| C07 |
C08 |
H7 |
108.8 |
109.4 |
| C03 |
C04 |
C05 |
120.1 |
120.0 |
| C03 |
C02 |
H021 |
120.0 |
120.0 |
| C04 |
C05 |
C06 |
119.9 |
120.0 |
| C04 |
C05 |
H051 |
120.1 |
120.0 |
| C02 |
C01 |
C06 |
120.2 |
120.0 |
| C02 |
C01 |
F21 |
119.8 |
120.0 |
| N11 |
C17 |
H171 |
108.0 |
109.7 |
| N11 |
C17 |
H172 |
108.0 |
109.8 |
| N15 |
C14 |
O18 |
121.0 |
118.5 |
| N11 |
C10 |
O12 |
118.4 |
120.0 |
| C01 |
C06 |
C05 |
120.0 |
120.0 |
| C05 |
C06 |
F20 |
120.0 |
120.0 |
| C06 |
C05 |
H051 |
120.1 |
120.0 |
| C06 |
C01 |
F21 |
120.0 |
120.0 |
| C01 |
C06 |
F20 |
120.0 |
120.0 |
| C09 |
C10 |
O12 |
119.7 |
120.0 |
| C10 |
C09 |
C08 |
109.8 |
109.4 |
| C10 |
C09 |
H091 |
109.4 |
109.5 |
| C10 |
C09 |
H092 |
109.4 |
109.5 |
| C09 |
C08 |
N19 |
108.8 |
109.5 |
| C09 |
C08 |
H7 |
108.8 |
109.5 |
| N19 |
C08 |
H7 |
110.1 |
109.5 |
| C08 |
N19 |
H10 |
109.5 |
111.0 |
| C08 |
N19 |
H9 |
109.5 |
111.0 |
| H171 |
C17 |
H172 |
109.4 |
109.7 |
| H1 |
C26 |
H2 |
109.5 |
109.5 |
| H1 |
C26 |
H3 |
109.4 |
109.5 |
| H2 |
C26 |
H3 |
109.5 |
109.5 |
| H4 |
C28 |
H5 |
109.5 |
109.5 |
| H4 |
C28 |
H6 |
109.4 |
109.5 |
| H5 |
C28 |
H6 |
109.5 |
109.5 |
| H072 |
C07 |
H071 |
109.5 |
109.5 |
| H091 |
C09 |
H092 |
109.5 |
109.5 |
| H162 |
C16 |
H161 |
109.4 |
109.1 |
| H10 |
N19 |
H9 |
109.5 |
111.0 |
| H232 |
C23 |
H231 |
109.5 |
109.5 |
| H12 |
C27 |
H13 |
109.4 |
109.5 |
| H12 |
C27 |
H14 |
109.5 |
109.5 |
| H13 |
C27 |
H14 |
109.5 |
109.5 |
Torsion Angles for 8OL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C26 |
C25 |
C28 |
O24 |
241.9 |
120.0 |
| C28 |
C25 |
C26 |
H1 |
180.0 |
60.0 |
| C28 |
C25 |
C26 |
H2 |
300.0 |
180.0 |
| C28 |
C25 |
C26 |
H3 |
60.0 |
300.0 |
| H4 |
C28 |
C25 |
H5 |
240.0 |
240.0 |
| H4 |
C28 |
C25 |
H6 |
120.0 |
120.0 |
| H5 |
C28 |
C25 |
H6 |
240.0 |
240.0 |
| C27 |
C25 |
C28 |
H4 |
180.0 |
180.0 |
| C27 |
C25 |
C28 |
H5 |
300.0 |
300.0 |
| C27 |
C25 |
C28 |
H6 |
60.0 |
60.0 |
| C27 |
C25 |
C26 |
H1 |
298.2 |
300.0 |
| C27 |
C25 |
C26 |
H2 |
58.3 |
60.0 |
| C27 |
C25 |
C26 |
H3 |
178.3 |
180.0 |
| C28 |
C25 |
C26 |
O24 |
117.7 |
240.0 |
| C26 |
C25 |
C28 |
H4 |
298.9 |
60.0 |
| C26 |
C25 |
C28 |
H5 |
59.0 |
180.0 |
| C26 |
C25 |
C28 |
H6 |
179.0 |
300.0 |
| H1 |
C26 |
C25 |
H2 |
240.0 |
240.0 |
| H1 |
C26 |
C25 |
H3 |
120.0 |
120.0 |
| H2 |
C26 |
C25 |
H3 |
240.0 |
240.0 |
| C26 |
C25 |
O24 |
C28 |
118.7 |
240.0 |
| O24 |
C25 |
C28 |
H4 |
57.0 |
300.0 |
| O24 |
C25 |
C28 |
H5 |
177.0 |
60.0 |
| O24 |
C25 |
C28 |
H6 |
297.0 |
180.0 |
| O24 |
C25 |
C26 |
H1 |
62.2 |
180.0 |
| O24 |
C25 |
C26 |
H2 |
182.2 |
300.0 |
| O24 |
C25 |
C26 |
H3 |
302.3 |
60.0 |
| C25 |
O24 |
C23 |
H232 |
284.8 |
60.0 |
| C25 |
O24 |
C23 |
H231 |
44.1 |
300.0 |
| C28 |
C25 |
O24 |
C23 |
138.0 |
180.0 |
| C26 |
C25 |
O24 |
C23 |
256.7 |
60.0 |
| O24 |
C23 |
C13 |
H131 |
349.6 |
184.7 |
| H232 |
C23 |
O24 |
H231 |
240.7 |
120.1 |
| C14 |
C13 |
C23 |
H131 |
121.4 |
120.3 |
| N11 |
C13 |
C23 |
H131 |
239.7 |
239.7 |
| F22 |
C03 |
C02 |
H021 |
0.0 |
0.0 |
| N11 |
C17 |
C16 |
H171 |
239.2 |
119.6 |
| N11 |
C17 |
C16 |
H172 |
120.9 |
240.3 |
| H171 |
C17 |
C16 |
H172 |
241.7 |
120.7 |
| N15 |
C16 |
C17 |
H171 |
92.1 |
287.1 |
| N15 |
C16 |
C17 |
H172 |
210.3 |
166.4 |
| C16 |
N15 |
C14 |
O18 |
179.9 |
184.3 |
| C23 |
C13 |
C14 |
H131 |
239.2 |
239.6 |
| C14 |
C13 |
N11 |
C17 |
46.5 |
42.7 |
| N11 |
C13 |
C14 |
H131 |
124.1 |
119.8 |
| N15 |
C14 |
C13 |
O18 |
179.4 |
180.1 |
| C23 |
C13 |
N11 |
H131 |
119.5 |
120.4 |
| N11 |
C13 |
C14 |
O18 |
139.9 |
167.3 |
| C14 |
C13 |
N11 |
H131 |
236.1 |
240.2 |
| C13 |
N11 |
C17 |
H171 |
227.5 |
58.1 |
| C13 |
N11 |
C17 |
H172 |
109.2 |
178.8 |
| C13 |
N11 |
C10 |
O12 |
180.3 |
0.3 |
| C07 |
C04 |
C05 |
H051 |
0.4 |
0.1 |
| C10 |
C09 |
C08 |
C07 |
95.4 |
175.0 |
| C09 |
C08 |
C07 |
N19 |
120.0 |
120.0 |
| C09 |
C08 |
C07 |
H7 |
240.6 |
240.0 |
| N19 |
C08 |
C07 |
H7 |
120.6 |
120.0 |
| C07 |
C08 |
N19 |
H10 |
180.0 |
296.0 |
| C07 |
C08 |
N19 |
H9 |
300.0 |
60.0 |
| H072 |
C07 |
C08 |
H071 |
120.6 |
120.0 |
| C04 |
C03 |
C02 |
H021 |
179.7 |
180.0 |
| C03 |
C04 |
C05 |
C06 |
359.3 |
360.0 |
| C03 |
C04 |
C05 |
H051 |
179.3 |
180.0 |
| C03 |
C02 |
C01 |
C06 |
0.0 |
360.0 |
| C03 |
C02 |
C01 |
F21 |
180.0 |
179.8 |
| C01 |
C06 |
C05 |
C04 |
0.3 |
360.0 |
| C04 |
C05 |
C06 |
F20 |
180.3 |
180.3 |
| C06 |
C05 |
C04 |
H051 |
180.0 |
180.0 |
| C02 |
C01 |
C06 |
C05 |
0.0 |
0.0 |
| C06 |
C01 |
C02 |
F21 |
180.0 |
180.2 |
| C02 |
C01 |
C06 |
F20 |
180.0 |
179.7 |
| C16 |
C17 |
N11 |
H171 |
120.9 |
240.4 |
| C16 |
C17 |
N11 |
H172 |
239.1 |
119.7 |
| C17 |
N11 |
C13 |
C14 |
46.5 |
42.7 |
| C17 |
N11 |
C13 |
H131 |
170.4 |
162.6 |
| C17 |
N11 |
C10 |
O12 |
359.7 |
180.2 |
| H171 |
C17 |
N11 |
H172 |
118.3 |
239.3 |
| C13 |
C14 |
N15 |
O18 |
180.6 |
179.9 |
| N15 |
C14 |
C13 |
H131 |
195.2 |
227.5 |
| O18 |
C14 |
C13 |
H131 |
15.9 |
47.4 |
| C09 |
C10 |
N11 |
O12 |
179.7 |
179.7 |
| N11 |
C10 |
C09 |
H091 |
323.8 |
300.3 |
| N11 |
C10 |
C09 |
H092 |
83.7 |
60.4 |
| C04 |
C05 |
C06 |
H051 |
180.0 |
180.0 |
| C05 |
C06 |
C01 |
F21 |
180.0 |
180.3 |
| C01 |
C06 |
C05 |
F20 |
180.0 |
179.6 |
| C04 |
C05 |
C06 |
C01 |
0.3 |
360.0 |
| C02 |
C01 |
C06 |
F21 |
180.0 |
179.8 |
| C05 |
C06 |
C01 |
F20 |
180.0 |
180.4 |
| C01 |
C06 |
C05 |
H051 |
180.4 |
180.0 |
| C02 |
C01 |
F21 |
C06 |
180.0 |
180.2 |
| F21 |
C01 |
C06 |
C05 |
180.0 |
180.3 |
| F21 |
C01 |
C06 |
F20 |
0.0 |
359.9 |
| C01 |
C06 |
F20 |
C05 |
180.0 |
180.4 |
| F20 |
C06 |
C05 |
H051 |
0.3 |
0.3 |
| F20 |
C06 |
C01 |
F21 |
0.0 |
359.9 |
| N11 |
C10 |
C09 |
O12 |
180.3 |
180.3 |
| C10 |
C09 |
C08 |
N19 |
216.1 |
295.0 |
| C10 |
C09 |
C08 |
H7 |
336.0 |
55.1 |
| H091 |
C09 |
C10 |
H092 |
240.1 |
239.9 |
| O12 |
C10 |
C09 |
C08 |
23.5 |
360.0 |
| O12 |
C10 |
C09 |
H091 |
143.5 |
119.9 |
| O12 |
C10 |
C09 |
H092 |
263.4 |
240.0 |
| C07 |
C08 |
C09 |
N19 |
239.3 |
240.0 |
| C09 |
C08 |
C07 |
H072 |
45.3 |
65.0 |
| C09 |
C08 |
C07 |
H071 |
284.7 |
305.0 |
| C07 |
C08 |
C09 |
H7 |
119.4 |
119.9 |
| C08 |
C09 |
C10 |
O12 |
23.5 |
360.0 |
| C10 |
C09 |
C08 |
H091 |
120.1 |
120.0 |
| C10 |
C09 |
C08 |
H092 |
240.0 |
240.0 |
| N19 |
C08 |
C09 |
H7 |
240.1 |
239.9 |
| C09 |
C08 |
N19 |
H10 |
58.9 |
176.1 |
| C09 |
C08 |
N19 |
H9 |
178.9 |
300.0 |
| N19 |
C08 |
C07 |
H072 |
285.2 |
305.0 |
| N19 |
C08 |
C07 |
H071 |
164.7 |
185.0 |
| C07 |
C08 |
N19 |
H7 |
240.2 |
240.0 |
| C09 |
C08 |
N19 |
H7 |
119.1 |
120.1 |
| H10 |
N19 |
C08 |
H9 |
240.0 |
236.0 |
| N11 |
C13 |
H131 |
C14 |
236.4 |
240.6 |
| H131 |
C13 |
C14 |
O18 |
15.9 |
47.4 |
| H131 |
C13 |
N11 |
C17 |
170.4 |
162.6 |
| C16 |
C17 |
H171 |
H172 |
117.4 |
239.3 |
| N11 |
C17 |
H171 |
H172 |
242.7 |
120.7 |
| C16 |
C17 |
H172 |
H171 |
242.7 |
120.6 |
| N11 |
C17 |
H172 |
H171 |
117.3 |
239.4 |
| H1 |
C26 |
C25 |
C28 |
180.0 |
60.0 |
| H1 |
C26 |
C25 |
O24 |
62.2 |
180.0 |
| C25 |
C26 |
H1 |
H2 |
120.0 |
120.0 |
| C25 |
C26 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C26 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C26 |
C25 |
C28 |
300.0 |
180.0 |
| H2 |
C26 |
C25 |
O24 |
182.2 |
300.0 |
| C25 |
C26 |
H2 |
H1 |
240.0 |
240.0 |
| C25 |
C26 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C26 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C26 |
C25 |
C28 |
60.0 |
300.0 |
| H3 |
C26 |
C25 |
O24 |
302.3 |
60.0 |
| C25 |
C26 |
H3 |
H1 |
120.0 |
120.0 |
| C25 |
C26 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C26 |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
C28 |
C25 |
O24 |
57.0 |
300.0 |
| C25 |
C28 |
H4 |
H5 |
120.0 |
120.0 |
| C25 |
C28 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C28 |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
C28 |
C25 |
O24 |
177.0 |
60.0 |
| C25 |
C28 |
H5 |
H4 |
240.0 |
240.0 |
| C25 |
C28 |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
C28 |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
C28 |
C25 |
O24 |
297.0 |
180.0 |
| C25 |
C28 |
H6 |
H4 |
120.0 |
120.0 |
| C25 |
C28 |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
C28 |
H6 |
H5 |
120.0 |
120.0 |
| H021 |
C02 |
C01 |
C06 |
180.0 |
180.0 |
| H021 |
C02 |
C01 |
F21 |
0.0 |
359.7 |
| C04 |
C05 |
H051 |
C06 |
180.0 |
180.0 |
| H051 |
C05 |
C06 |
F20 |
0.3 |
0.3 |
| H072 |
C07 |
C08 |
N19 |
285.2 |
305.0 |
| C08 |
C07 |
H072 |
H071 |
239.1 |
239.9 |
| H072 |
C07 |
C08 |
H7 |
164.6 |
185.0 |
| H071 |
C07 |
C08 |
N19 |
164.7 |
185.0 |
| C08 |
C07 |
H071 |
H072 |
120.9 |
120.1 |
| H071 |
C07 |
C08 |
H7 |
44.1 |
65.0 |
| C07 |
C08 |
H7 |
N19 |
120.5 |
120.0 |
| H7 |
C08 |
C07 |
H072 |
164.6 |
185.0 |
| H7 |
C08 |
C07 |
H071 |
44.1 |
65.0 |
| C09 |
C08 |
H7 |
N19 |
240.9 |
239.9 |
| H7 |
C08 |
N19 |
H10 |
299.8 |
56.0 |
| H7 |
C08 |
N19 |
H9 |
59.8 |
180.0 |
| H091 |
C09 |
C10 |
O12 |
143.5 |
119.9 |
| C10 |
C09 |
H091 |
C08 |
239.7 |
240.0 |
| C10 |
C09 |
H091 |
H092 |
119.9 |
120.1 |
| H091 |
C09 |
C08 |
N19 |
96.1 |
175.0 |
| H091 |
C09 |
C08 |
H7 |
216.0 |
295.1 |
| H092 |
C09 |
C10 |
O12 |
263.4 |
240.0 |
| C10 |
C09 |
H092 |
C08 |
120.3 |
119.9 |
| C10 |
C09 |
H092 |
H091 |
240.2 |
239.9 |
| H092 |
C09 |
C08 |
N19 |
336.1 |
54.9 |
| H092 |
C09 |
C08 |
H7 |
96.1 |
175.1 |
| H8 |
N15 |
C14 |
O18 |
359.9 |
4.4 |
| H162 |
C16 |
C17 |
H171 |
212.5 |
47.5 |
| H162 |
C16 |
C17 |
H172 |
330.8 |
286.8 |
| H162 |
C16 |
N15 |
H8 |
94.1 |
37.7 |
| H161 |
C16 |
C17 |
H171 |
331.6 |
166.7 |
| H161 |
C16 |
C17 |
H172 |
89.9 |
46.0 |
| H161 |
C16 |
N15 |
H8 |
335.0 |
278.5 |
| H10 |
N19 |
C08 |
H7 |
299.8 |
56.0 |
| C08 |
N19 |
H10 |
H9 |
120.0 |
124.0 |
| H9 |
N19 |
C08 |
H7 |
59.8 |
180.0 |
| C08 |
N19 |
H9 |
H10 |
239.9 |
236.0 |
| O24 |
C23 |
H232 |
H231 |
119.0 |
240.0 |
| H232 |
C23 |
C13 |
H131 |
229.3 |
304.7 |
| O24 |
C23 |
H231 |
H232 |
241.1 |
120.0 |
| H231 |
C23 |
C13 |
H131 |
110.0 |
64.7 |
| H13 |
C27 |
H12 |
H14 |
120.0 |
120.1 |
| H12 |
C27 |
H13 |
H14 |
240.0 |
239.9 |
| H12 |
C27 |
H14 |
H13 |
120.0 |
120.1 |