PDB Chemical Component 8OG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8OG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.614 1.610
OP3 HOP3 0.950 0.967
P OP1 1.480 1.479
P OP2 1.481 1.610
P O5' 1.609 1.610
OP2 HOP2 0.949 0.967
O5' C5' 1.432 1.428
C5' C4' 1.527 1.530
C5' H5' 1.090 1.090
C5' H5'' 1.090 1.090
C4' O4' 1.448 1.445
C4' C3' 1.527 1.549
C4' H4' 1.089 1.091
O4' C1' 1.438 1.437
C3' O3' 1.435 1.428
C3' C2' 1.506 1.547
C3' H3' 1.086 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.516 1.541
C2' H2' 1.090 1.090
C2' H2'' 1.093 1.089
C1' N9 1.477 1.464
C1' H1' 1.089 1.090
N9 C8 1.357 1.346
N9 C4 1.394 1.379
C8 N7 1.265 1.347
C8 O8 1.229 1.216
N7 C5 1.393 1.397
N7 H7 1.005 0.970
C5 C6 1.417 1.402
C5 C4 1.401 1.388
C6 O6 1.227 1.221
C6 N1 1.390 1.351
N1 C2 1.384 1.362
N1 H1 1.010 0.970
C2 N2 1.332 1.372
C2 N3 1.340 1.315
N2 H21 1.009 0.969
N2 H22 1.009 0.970
N3 C4 1.349 1.338

Bond Angles for 8OG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 108.3 106.8
OP3 P OP1 108.3 109.5
OP3 P OP2 108.4 109.5
OP3 P O5' 102.6 109.5
OP1 P OP2 119.9 109.5
OP1 P O5' 108.4 109.5
OP2 P O5' 108.0 109.5
P OP2 HOP2 108.4 106.8
P O5' C5' 120.6 106.8
O5' C5' C4' 111.7 109.5
O5' C5' H5' 109.1 109.5
O5' C5' H5'' 109.0 109.5
C4' C5' H5' 109.0 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 110.9 110.8
C5' C4' C3' 111.1 110.7
C5' C4' H4' 109.1 110.5
H5' C5' H5'' 109.1 109.5
O4' C4' C3' 107.7 103.6
O4' C4' H4' 109.0 110.5
C4' O4' C1' 109.1 106.9
C3' C4' H4' 109.1 110.6
C4' C3' O3' 110.5 111.0
C4' C3' C2' 105.0 102.1
C4' C3' H3' 109.8 110.8
O4' C1' C2' 106.4 107.4
O4' C1' N9 111.1 109.9
O4' C1' H1' 108.8 109.9
O3' C3' C2' 111.6 111.0
O3' C3' H3' 110.3 110.8
C3' O3' HO3' 110.4 106.9
C2' C3' H3' 109.4 110.9
C3' C2' C1' 104.9 104.2
C3' C2' H2' 109.7 110.5
C3' C2' H2'' 111.0 110.5
C1' C2' H2' 109.9 110.6
C1' C2' H2'' 111.2 110.5
C2' C1' N9 111.6 109.9
C2' C1' H1' 109.4 109.8
H2' C2' H2'' 110.1 110.4
N9 C1' H1' 109.4 109.9
C1' N9 C8 123.3 125.6
C1' N9 C4 131.9 125.7
C8 N9 C4 104.8 108.7
N9 C8 N7 115.6 109.5
N9 C8 O8 118.9 125.3
N9 C4 C5 105.5 107.0
N9 C4 N3 126.9 133.4
N7 C8 O8 125.5 125.3
C8 N7 C5 105.4 107.9
C8 N7 H7 127.0 126.1
C5 N7 H7 127.5 126.0
N7 C5 C6 131.4 134.0
N7 C5 C4 108.6 106.9
C6 C5 C4 120.0 119.1
C5 C6 O6 128.6 120.8
C5 C6 N1 111.1 118.5
C5 C4 N3 127.6 119.6
O6 C6 N1 120.3 120.7
C6 N1 C2 125.4 120.1
C6 N1 H1 115.9 120.0
C2 N1 H1 118.7 119.9
N1 C2 N2 116.3 119.1
N1 C2 N3 123.9 121.7
N2 C2 N3 119.8 119.2
C2 N2 H21 120.0 120.0
C2 N2 H22 120.0 120.0
C2 N3 C4 112.0 121.1
H21 N2 H22 120.1 120.0

Torsion Angles for 8OG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 131.5 240.0
OP1 P OP3 O5' 245.5 120.0
OP2 P OP3 O5' 114.1 240.0
OP3 P OP2 HOP2 180.0 59.9
OP3 P O5' C5' 282.3 180.0
HOP3 OP3 P OP1 180.0 300.1
HOP3 OP3 P OP2 48.5 60.0
HOP3 OP3 P O5' 294.4 180.0
OP1 P OP3 HOP3 180.0 300.1
OP3 P OP1 OP2 235.1 120.0
OP3 P OP1 O5' 110.6 240.0
OP2 P OP1 O5' 235.6 120.0
OP1 P OP2 HOP2 55.1 180.0
OP1 P O5' C5' 36.7 60.0
OP2 P OP3 HOP3 48.5 60.0
OP3 P OP2 OP1 124.9 240.0
OP3 P OP2 O5' 249.5 120.0
OP1 P OP2 O5' 124.6 240.0
OP2 P O5' C5' 168.0 300.0
O5' P OP3 HOP3 294.4 180.0
OP3 P O5' OP1 245.6 120.0
OP3 P O5' OP2 114.3 240.0
OP1 P O5' OP2 228.8 120.0
O5' P OP2 HOP2 290.5 299.9
P O5' C5' C4' 184.4 180.0
P O5' C5' H5' 63.9 60.0
P O5' C5' H5'' 304.8 300.0
HOP2 OP2 P O5' 290.5 299.9
C4' C5' O5' H5' 120.5 120.0
C4' C5' O5' H5'' 239.6 240.1
O5' C5' C4' O4' 298.0 65.7
O5' C5' C4' C3' 57.7 180.1
O5' C5' C4' H4' 177.9 302.8
H5' C5' O5' H5'' 119.0 120.1
O5' C5' C4' H5' 239.4 240.0
O5' C5' C4' H5'' 120.4 120.0
H5' C5' C4' H5'' 241.0 240.0
O4' C4' C5' C3' 240.3 245.6
O4' C4' C5' H4' 120.0 122.8
C5' C4' O4' C1' 131.6 158.6
C3' C4' C5' H4' 239.7 237.2
C5' C4' C3' O3' 125.2 86.0
C5' C4' C3' C2' 245.6 204.3
C5' C4' C3' H3' 3.2 322.4
O5' C5' H5' C4' 122.2 120.0
O5' C5' H5' H5'' 241.0 240.0
C4' C5' H5' H5'' 118.9 119.9
H5' C5' C4' O4' 58.5 185.7
H5' C5' C4' C3' 178.3 300.1
H5' C5' C4' H4' 298.5 62.9
O5' C5' H5'' C4' 237.9 240.0
O5' C5' H5'' H5' 119.0 120.0
C4' C5' H5'' H5' 241.1 240.0
H5'' C5' C4' O4' 177.5 305.7
H5'' C5' C4' C3' 297.2 60.1
H5'' C5' C4' H4' 57.5 182.9
O4' C4' C5' H5' 58.5 185.7
O4' C4' C5' H5'' 177.5 305.7
C5' C4' O4' C3' 121.7 118.7
C5' C4' O4' H4' 239.9 237.2
C3' C4' O4' H4' 118.2 118.5
O4' C4' C3' O3' 246.8 204.8
O4' C4' C3' C2' 7.2 323.1
O4' C4' C3' H3' 124.8 81.2
C4' O4' C1' C2' 337.0 333.7
C4' O4' C1' N9 215.3 214.2
C4' O4' C1' H1' 94.7 93.1
C3' C4' C5' H5' 178.3 300.1
C3' C4' C5' H5'' 297.2 60.1
C5' C4' C3' O4' 238.4 241.2
C5' C4' C3' H4' 120.3 122.7
O4' C4' C3' H4' 241.9 241.5
C3' C4' O4' C1' 9.8 39.8
O3' C3' C4' C2' 239.5 241.7
O3' C3' C4' H3' 121.9 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 242.4 241.9
C4' C3' C2' C1' 339.5 20.8
C4' C3' C2' H2' 97.5 262.1
C4' C3' C2' H2'' 219.3 139.6
H4' C4' C5' H5' 298.5 62.9
H4' C4' C5' H5'' 57.5 182.9
C5' C4' H4' O4' 121.2 123.0
C5' C4' H4' C3' 238.5 237.2
O4' C4' H4' C3' 117.3 114.2
H4' C4' O4' C1' 251.7 281.4
H4' C4' C3' O3' 4.9 323.3
H4' C4' C3' C2' 125.4 81.6
H4' C4' C3' H3' 242.9 199.7
C1' O4' C4' C3' 9.8 39.8
C1' O4' C4' H4' 251.7 281.4
C3' C2' C1' O4' 27.0 2.0
O4' C1' C2' H2' 269.1 120.7
O4' C1' C2' H2'' 147.0 243.2
C2' C1' O4' N9 121.7 119.5
C2' C1' O4' H1' 242.3 240.6
N9 C1' O4' H1' 120.6 121.0
O4' C1' N9 C8 250.9 58.3
O4' C1' N9 C4 69.6 238.3
O3' C3' C4' H4' 4.9 323.3
C4' C3' O3' C2' 116.4 112.8
C4' C3' O3' H3' 238.4 236.4
C2' C3' O3' H3' 121.9 123.6
O3' C3' C2' C1' 99.3 139.2
O3' C3' C2' H2' 217.3 20.4
O3' C3' C2' H2'' 339.1 257.9
C2' C3' C4' H4' 125.4 81.6
C4' C3' C2' O3' 240.3 241.7
C4' C3' C2' H3' 117.8 118.1
O4' C1' C2' C3' 27.0 2.0
O3' C3' C2' H3' 237.6 236.4
C2' C3' O3' HO3' 63.5 61.4
C1' C2' C3' H2' 242.0 118.8
C1' C2' C3' H2'' 120.2 241.3
C3' C2' C1' N9 148.4 121.5
C3' C2' C1' H1' 269.6 242.5
H2' C2' C3' H2'' 238.2 122.5
H3' C3' C4' H4' 242.9 199.7
C4' C3' H3' O3' 122.0 123.7
C4' C3' H3' C2' 245.2 247.4
O3' C3' H3' C2' 123.2 123.7
H3' C3' O3' HO3' 301.6 297.8
H3' C3' C2' C1' 221.7 262.8
H3' C3' C2' H2' 339.7 144.0
H3' C3' C2' H2'' 101.5 21.5
HO3' O3' C3' C2' 63.5 61.4
HO3' O3' C3' H3' 301.6 297.8
O4' C1' C2' N9 238.6 240.5
O4' C1' C2' H1' 117.4 119.5
C1' C2' C3' H3' 221.7 262.8
C3' C2' C1' H2' 117.9 241.3
C3' C2' C1' H2'' 240.0 118.7
H2' C2' C1' H2'' 122.1 237.4
N9 C1' C2' H1' 238.8 239.0
C2' C1' N9 C8 132.3 300.3
C2' C1' N9 C4 311.1 120.3
H2' C2' C3' H3' 339.7 144.0
C3' C2' H2' C1' 245.1 114.8
C3' C2' H2' H2'' 122.3 237.4
C1' C2' H2' H2'' 237.2 122.6
H2' C2' C1' N9 30.5 240.2
H2' C2' C1' H1' 151.7 1.2
H2'' C2' C3' H3' 101.5 21.5
C3' C2' H2'' C1' 116.4 245.2
C3' C2' H2'' H2' 238.4 122.5
C1' C2' H2'' H2' 122.0 237.4
H2'' C2' C1' N9 268.4 2.7
H2'' C2' C1' H1' 29.6 123.7
O4' C1' N9 C2' 118.6 118.0
O4' C1' N9 H1' 239.8 239.0
N9 C1' C2' H2' 30.5 240.2
N9 C1' C2' H2'' 268.4 2.7
C2' C1' N9 H1' 121.2 121.0
C8 N9 C1' C4 181.2 180.0
C1' N9 C8 N7 178.9 180.0
C1' N9 C8 O8 358.5 360.0
C1' N9 C4 C5 181.2 180.0
C1' N9 C4 N3 1.2 359.9
O4' C1' H1' C2' 244.2 242.1
O4' C1' H1' N9 121.6 121.1
H1' C1' C2' H2' 151.7 1.2
H1' C1' C2' H2'' 29.6 123.7
C2' C1' H1' N9 237.4 239.0
H1' C1' N9 C8 11.1 179.3
H1' C1' N9 C4 189.8 359.4
C8 N9 C1' H1' 11.1 179.3
C1' N9 C8 C4 179.1 180.0
C8 N9 C4 C5 0.1 0.0
C8 N9 C4 N3 180.1 179.9
N7 C8 N9 O8 180.5 180.1
N9 C8 N7 C5 0.0 360.0
N9 C8 N7 H7 177.0 180.0
C4 N9 C1' H1' 189.8 359.4
C1' N9 C4 C8 181.1 180.0
C4 N9 C8 N7 359.9 0.0
C4 N9 C8 O8 179.4 179.9
N7 C5 C4 N9 359.9 360.0
C6 C5 C4 N9 180.0 180.0
C5 C4 N9 N3 180.0 180.1
C2 N3 C4 N9 179.9 180.1
N7 C8 N9 C4 359.9 0.0
N9 C8 N7 O8 179.5 179.9
C5 N7 C8 H7 183.0 179.9
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 0.0 0.0
O8 C8 N9 C4 179.4 179.9
N9 C8 O8 N7 180.5 180.1
O8 C8 N7 C5 180.6 180.0
O8 C8 N7 H7 357.5 0.1
N9 C4 C5 N7 359.9 360.0
C5 N7 C8 O8 180.6 180.0
C8 N7 C5 H7 176.9 180.1
C6 C5 N7 C4 179.9 180.0
N7 C5 C6 O6 0.3 360.0
N7 C5 C6 N1 180.2 179.7
N7 C5 C4 N3 179.9 180.0
H7 N7 C8 O8 357.5 0.1
C8 N7 H7 C5 183.7 179.9
H7 N7 C5 C6 3.0 360.0
H7 N7 C5 C4 183.1 180.0
N9 C4 C5 C6 180.0 180.0
C6 C5 N7 H7 3.0 360.0
N7 C5 C6 C4 180.1 180.0
C6 C5 C4 N3 360.0 0.0
O6 C6 C5 N1 180.0 180.3
C5 C6 N1 C2 359.9 0.5
C5 C6 N1 H1 180.0 180.0
N9 C4 C5 N3 180.0 179.9
C4 C5 N7 H7 183.1 180.0
N7 C5 C4 C6 179.9 180.0
C4 C5 C6 O6 180.1 180.0
C4 C5 C6 N1 0.1 359.7
C2 N3 C4 C5 360.0 0.0
O6 C6 C5 C4 180.1 180.0
C5 C6 O6 N1 180.0 179.7
O6 C6 N1 C2 179.9 180.3
O6 C6 N1 H1 359.9 359.8
N1 C6 C5 C4 0.1 359.7
C5 C6 N1 O6 180.0 180.3
C2 N1 C6 H1 179.9 180.5
C6 N1 C2 N2 180.7 179.7
C6 N1 C2 N3 0.1 359.5
C6 N1 C2 H1 180.1 179.5
N2 C2 N1 N3 180.6 180.2
N1 C2 N2 H21 179.4 179.8
N1 C2 N2 H22 359.3 359.4
N1 C2 N3 C4 0.0 0.2
C6 N1 H1 C2 179.9 180.5
H1 N1 C2 N2 0.6 0.2
H1 N1 C2 N3 180.0 180.0
N2 C2 N1 H1 0.6 0.2
N1 C2 N2 N3 179.4 179.8
N2 C2 N3 C4 179.4 180.0
H21 N2 C2 H22 180.1 180.4
N9 C4 N3 C2 179.9 180.1
C5 C4 N3 C2 360.0 0.0
N3 C2 N1 H1 180.0 180.0
N1 C2 N3 N2 180.7 180.2
N3 C2 N2 H21 0.0 0.0
N3 C2 N2 H22 179.9 179.6
H21 N2 C2 N3 0.0 0.0
C2 N2 H21 H22 179.9 179.6
H22 N2 C2 N3 179.9 179.6
C2 N2 H22 H21 180.1 180.4
N9 C4 N3 C5 180.0 180.1