Atom Nomenclature for 8O3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8O3

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C17 C3
C01 C4
C02 C5
C03 C6
C04 C7
C05 C8
C06 C9
C07 C10
C08 C11
C09 C12
N11 N1
O12 O1
C14 C13
N15 N2
C16 C14
O18 O2
N19 N3
F20 F1
F21 F2
F22 F3
H132 H1
H131 H2
H171 H3
H172 H4
H021 H5
H051 H6
H071 H7
H072 H8
H1 H9
H092 H10
H091 H11
H2 H12
H161 H13
H162 H14
H3 H15
H4 H16