Atom Nomenclature for 8NU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8NU

Atom Name (V3) Atom Name (V2)
C01 C1
C02 C2
C03 C3
C04 C4
C05 C5
C07 C6
C08 C7
C09 C8
C10 C9
C11 C10
C12 C11
C15 C12
C16 C13
C17 C14
C18 C15
C19 C16
C21 C17
C22 C18
C25 C19
C26 C20
C27 C21
C28 C22
C29 C23
F20 F1
N06 N1
N13 N2
N24 N3
N30 N4
O14 O1
O23 O2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27