PDB Chemical Component 8MM

Ideal Model

Chemical Description

Name (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside
Synonyms N2'-acetylgentamicin C1A
Formula C21 H41 N5 O8
Formal charge 0
Molecular weight 491.579 g/mol
Component type NON-POLYMER

Chemical features

Atom count 75
Chiral atom count 12
Chiral atoms C14 C5 C6 C11 C7 C8 C10 C12 C13 C15 C16 C2
Bond count 77
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside
Systematic name (OpenEye OEToolkits) ~{N}-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-2-[(1~{R},2~{S},3~{S},4~{R},6~{S})-4,6-bis(azanyl)-3-[(2~{R},3~{R},4~{R},5~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-oxan-3-yl]ethanamide

Chemical Descriptors

Stereo SMILES (CACTVS) CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)CC[C@H]3NC(C)=O)[C@@H]2O
SMILES (CACTVS) CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)CC[CH]3NC(C)=O)[CH]2O
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1CC[C@H](O[C@@H]1O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2O)O[C@@H]3[C@@H]([C@H]([C@@](CO3)(C)O)NC)O)N)N)CN
InChI descriptor InChI=1S/C21H41N5O8/c1-9(27)26-13-5-4-10(7-22)32-19(13)33-16-11(23)6-12(24)17(14(16)28)34-20-15(29)18(25-3)21(2,30)8-31-20/h10-20,25,28-30H,4-8,22-24H2,1-3H3,(H,26,27)/t10-,11-,12+,13+,14-,15+,16+,17-,18+,19+,20+,21-/m0/s1
InChIKey descriptor RLGSXXMFPPOROB-JOYMZIHVSA-N

Status Information

Last modified 2021-03-01
Created 2017-02-28
Release status REL
Model PDB code 5US1
Processing site RCSB