PDB Chemical Component 8MG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8MG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP3 1.487 1.617
P OP2 1.485 1.617
P O5' 1.594 1.619
P OP1   1.501
OP3 H3P 0.950 0.981
OP2 H2P 0.950 0.981
O5' C5' 1.430 1.417
N9 C4 1.375 1.367
N9 C8 1.372 1.377
N9 C1' 1.461 1.459
C4 N3 1.351 1.351
C4 C5 1.378 1.374
N3 C2 1.322 1.316
C2 N2 1.337 1.371
C2 N1 1.371 1.416
N2 H21 1.010 0.994
N2 H22 1.011 0.993
N1 C6 1.391 1.401
N1 H1 1.009 1.016
C6 O6 1.237 1.225
C6 C5 1.419 1.437
C5 N7 1.388 1.363
N7 C8 1.306 1.318
C8 C 1.338 1.479
C2' C1' 1.526 1.522
C2' C3' 1.520 1.512
C2' H2' 1.087 1.097
C2' H2'' 1.090 1.094
C5' C4' 1.511 1.523
C5' H5' 1.090 1.090
C5' H5'' 1.090 1.091
C4' O4' 1.443 1.443
C4' C3' 1.524 1.525
C4' H4' 1.092 1.095
O4' C1' 1.420 1.439
C1' H1' 1.089 1.095
C3' O3' 1.430 1.425
C3' H3' 1.088 1.093
O3' HO3' 0.951 0.969
C HC1 1.091 1.101
C HC2 1.089 1.102
C HC3 1.091 1.103

Bond Angles for 8MG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP2 119.5 103.3
OP3 P O5' 108.2 103.7
OP3 P OP1   115.3
P OP3 H3P 119.6 118.9
OP2 P O5' 108.1 102.9
OP2 P OP1   115.0
P OP2 H2P 119.5 118.9
O5' P OP1   115.0
P O5' C5' 121.1 118.5
O5' C5' C4' 110.4 108.7
O5' C5' H5' 109.5 109.2
O5' C5' H5'' 109.6 109.2
C4 N9 C8 106.4 106.4
C4 N9 C1' 127.1 126.7
N9 C4 N3 126.1 125.9
N9 C4 C5 105.3 105.0
C8 N9 C1' 126.5 126.8
N9 C8 N7 113.1 112.5
N9 C8 C 123.9 121.7
N9 C1' C2' 114.6 114.3
N9 C1' O4' 107.7 110.0
N9 C1' H1' 108.3 105.9
N3 C4 C5 128.6 129.1
C4 N3 C2 111.9 113.0
C4 C5 C6 118.8 119.2
C4 C5 N7 110.8 112.1
N3 C2 N2 119.6 122.1
N3 C2 N1 124.1 122.6
N2 C2 N1 116.3 115.3
C2 N2 H21 119.6 118.2
C2 N2 H22 120.1 118.3
C2 N1 C6 125.0 125.2
C2 N1 H1 118.0 117.4
H21 N2 H22 120.3 123.5
C6 N1 H1 117.0 117.4
N1 C6 O6 119.8 125.4
N1 C6 C5 111.6 110.9
O6 C6 C5 128.6 123.8
C6 C5 N7 130.4 128.7
C5 N7 C8 104.3 103.9
N7 C8 C 121.3 125.7
C8 C HC1 109.4 111.0
C8 C HC2 109.5 111.9
C8 C HC3 109.4 111.9
C1' C2' C3' 104.8 101.6
C1' C2' H2' 112.3 110.5
C1' C2' H2'' 109.7 111.7
C2' C1' O4' 107.6 106.7
C2' C1' H1' 110.6 111.7
C3' C2' H2' 111.2 110.0
C3' C2' H2'' 111.3 114.2
C2' C3' C4' 103.4 103.2
C2' C3' O3' 110.8 108.4
C2' C3' H3' 111.7 113.7
H2' C2' H2'' 107.6 108.7
C4' C5' H5' 109.1 110.1
C4' C5' H5'' 109.0 110.1
C5' C4' O4' 110.1 108.0
C5' C4' C3' 114.9 112.7
C5' C4' H4' 107.6 109.4
H5' C5' H5'' 109.1 109.6
O4' C4' C3' 104.7 106.8
O4' C4' H4' 113.1 107.7
C4' O4' C1' 109.4 108.7
C3' C4' H4' 106.6 112.0
C4' C3' O3' 110.1 109.6
C4' C3' H3' 111.3 114.0
O4' C1' H1' 107.9 108.1
O3' C3' H3' 109.4 107.8
C3' O3' HO3' 110.8 106.6
HC1 C HC2 109.6 107.9
HC1 C HC3 109.4 107.8
HC2 C HC3 109.5 106.1

Torsion Angles for 8MG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 O5' 124.2 107.1
OP2 P OP3 OP1   233.7
OP3 P OP2 H2P 179.9 78.5
O5' P OP3 OP1   126.6
OP3 P O5' C5' 345.5 53.2
OP3 P OP2 O5' 235.8 252.3
OP3 P OP2 OP1   126.5
OP2 P OP3 H3P 180.0 282.5
O5' P OP2 OP1   234.2
OP2 P O5' C5' 214.7 305.8
OP3 P O5' OP2 130.8 107.4
OP3 P O5' OP1   233.2
O5' P OP3 H3P 55.8 175.4
OP2 P O5' OP1   125.8
O5' P OP2 H2P 304.2 186.1
P O5' C5' C4' 214.2 180.0
P O5' C5' H5' 94.1 300.1
P O5' C5' H5'' 334.3 59.9
OP3 P OP1 OP2   239.9
OP3 P OP1 O5'   120.6
OP1 P OP3 H3P   48.8
OP2 P OP1 O5'   240.7
OP1 P OP2 H2P   312.0
OP1 P O5' C5'   180.0
H3P OP3 P OP2 180.0 282.5
H3P OP3 P O5' 55.8 175.4
H3P OP3 P OP1   48.8
H2P OP2 P O5' 304.2 186.1
H2P OP2 P OP1   312.0
C5' O5' P OP1   180.0
C4' C5' O5' H5' 120.1 239.9
C4' C5' O5' H5'' 239.8 120.1
O5' C5' C4' O4' 1.1 61.8
O5' C5' C4' C3' 119.0 179.5
O5' C5' C4' H4' 237.5 304.8
H5' C5' O5' H5'' 119.7 240.2
C8 N9 C4 C1' 180.0 180.0
C4 N9 C8 N7 0.2 0.0
C4 N9 C8 C 195.1 180.1
C4 N9 C1' C2' 329.5 243.4
C4 N9 C1' O4' 89.2 3.4
C4 N9 C1' H1' 205.6 120.0
N3 C4 N9 C5 180.1 180.1
N9 C4 N3 C2 179.8 180.0
N9 C4 C5 C6 180.2 180.0
N9 C4 C5 N7 0.1 0.0
C4 N9 C8 C1' 180.0 180.0
C8 N9 C4 N3 179.9 180.0
C8 N9 C4 C5 359.8 360.0
C8 N9 C1' C2' 149.6 63.4
C8 N9 C1' O4' 269.2 183.4
C8 N9 C1' H1' 25.6 299.9
C5 N7 C8 N9 359.8 360.0
N7 C8 N9 C 165.1 180.0
N9 C8 C HC1 287.3 140.2
N9 C8 C HC2 167.2 260.8
N9 C8 C HC3 47.2 19.7
C4 N9 C1' C8 180.0 180.0
C1' N9 C4 N3 360.0 360.0
C1' N9 C4 C5 179.8 179.9
C1' N9 C8 N7 180.2 180.1
C1' N9 C8 C 15.1 0.1
N9 C1' C2' C3' 114.1 154.5
N9 C1' C2' H2' 353.3 37.8
N9 C1' C2' H2'' 233.7 276.7
C2' C1' N9 O4' 240.4 240.0
C2' C1' N9 H1' 123.9 123.5
C4' O4' C1' N9 220.9 218.2
O4' C1' N9 H1' 243.6 243.5
N3 C4 N9 C8 179.9 180.0
N3 C4 N9 C1' 360.0 360.0
N9 C4 N3 C5 179.8 179.9
N3 C4 C5 C6 0.1 360.0
N3 C4 C5 N7 180.0 180.0
C4 N3 C2 N2 179.8 180.0
C4 N3 C2 N1 359.9 0.0
C5 C4 N9 C8 359.8 360.0
C5 C4 N9 C1' 179.8 179.9
N9 C4 C5 N3 180.1 180.1
C5 C4 N3 C2 360.0 0.0
N1 C6 C5 C4 360.0 360.0
O6 C6 C5 C4 180.0 180.0
C6 C5 C4 N7 180.1 180.0
C4 C5 N7 C8 0.0 360.0
C2 N3 C4 C5 360.0 0.0
N2 C2 N3 N1 179.9 180.0
N3 C2 N2 H21 360.0 223.6
N3 C2 N2 H22 180.6 43.5
N3 C2 N1 C6 0.2 360.0
N3 C2 N1 H1 180.3 180.0
N3 C2 N2 N1 180.1 180.0
N2 C2 N1 C6 180.2 180.0
N2 C2 N1 H1 0.3 0.0
H21 N2 C2 H22 179.4 180.0
N3 C2 N1 N2 179.9 180.0
N1 C2 N2 H21 179.9 43.6
N1 C2 N2 H22 0.5 223.6
C6 N1 C2 H1 179.9 179.9
C2 N1 C6 O6 179.9 180.0
C2 N1 C6 C5 359.9 0.0
H21 N2 C2 N1 179.9 43.6
C2 N2 H21 H22 180.6 180.0
H22 N2 C2 N1 0.5 223.6
C2 N2 H22 H21 179.4 180.0
C4 C5 C6 N1 360.0 360.0
C2 N1 C6 H1 180.1 180.1
O6 C6 N1 C5 180.0 180.0
N1 C6 C5 N7 180.1 180.0
C2 N1 H1 C6 179.9 179.9
H1 N1 C6 O6 359.8 360.0
H1 N1 C6 C5 179.8 180.0
C4 C5 C6 O6 180.0 180.0
O6 C6 N1 H1 359.8 360.0
N1 C6 O6 C5 180.0 180.0
O6 C6 C5 N7 0.1 0.0
C4 C5 C6 N7 179.9 180.0
C5 C6 N1 H1 179.8 180.0
N1 C6 C5 O6 180.0 180.0
C6 C5 N7 C8 179.9 180.0
N9 C8 N7 C5 359.8 360.0
C4 C5 N7 C6 180.1 180.0
C5 N7 C8 C 165.4 180.0
N7 C8 N9 C1' 180.2 180.1
N9 C8 N7 C 194.4 180.0
N7 C8 C HC1 123.4 320.2
N7 C8 C HC2 3.2 80.8
N7 C8 C HC3 243.2 199.8
C C8 N9 C1' 15.1 0.1
N9 C8 C N7 164.0 180.0
HC1 C C8 HC2 120.1 239.4
HC1 C C8 HC3 240.1 120.5
HC2 C C8 HC3 120.0 241.0
N9 C1' C2' O4' 119.7 121.8
N9 C1' C2' H1' 237.3 239.7
C3' C2' C1' H2' 120.8 116.7
C3' C2' C1' H2'' 240.4 237.8
C1' C2' C3' C4' 22.5 325.2
C1' C2' C3' O3' 140.4 81.3
C1' C2' C3' H3' 262.7 201.2
H2' C2' C1' H2'' 119.6 121.1
C4' O4' C1' C2' 344.9 342.7
O4' C1' C2' H1' 117.6 117.9
C1' C2' C3' H2' 238.5 243.0
C1' C2' C3' H2'' 118.5 120.4
C3' C2' C1' O4' 354.4 32.7
C3' C2' C1' H1' 236.8 274.8
H2' C2' C3' H2'' 240.0 237.5
C5' C4' C3' C2' 207.5 267.4
O4' C4' C3' C2' 328.4 25.9
C2' C3' C4' H4' 88.4 143.6
C4' C3' C2' O3' 242.1 243.8
C4' C3' C2' H3' 119.8 123.9
O3' C3' C2' H3' 237.7 240.1
C2' C3' O3' HO3' 180.0 294.7
C1' C2' H2' C3' 117.0 111.4
C1' C2' H2' H2'' 239.2 237.1
H2' C2' C1' O4' 233.6 276.0
H2' C2' C1' H1' 116.0 158.1
C3' C2' H2' H2'' 122.1 125.7
H2' C2' C3' C4' 144.0 82.2
H2' C2' C3' O3' 261.9 198.4
H2' C2' C3' H3' 24.2 318.3
C1' C2' H2'' C3' 244.5 245.4
C1' C2' H2'' H2' 122.4 122.1
H2'' C2' C1' O4' 114.0 154.9
H2'' C2' C1' H1' 356.4 37.0
C3' C2' H2'' H2' 237.9 236.7
H2'' C2' C3' C4' 264.0 204.8
H2'' C2' C3' O3' 21.9 320.9
H2'' C2' C3' H3' 144.2 80.8
O5' C5' C4' H5' 239.6 119.6
O5' C5' C4' H5'' 120.5 240.5
C2' C3' C4' C5' 207.5 267.4
H5' C5' C4' H5'' 240.9 120.9
O4' C4' C5' C3' 242.1 242.3
O4' C4' C5' H4' 123.6 117.0
C5' C4' O4' C1' 153.6 116.0
C3' C4' C5' H4' 241.5 234.7
C5' C4' C3' O3' 89.1 152.1
C5' C4' C3' H3' 327.6 31.2
O5' C5' H5' C4' 120.9 240.8
O5' C5' H5' H5'' 240.0 119.6
C4' C5' H5' H5'' 119.0 238.8
H5' C5' C4' O4' 121.5 302.2
H5' C5' C4' C3' 239.4 60.0
H5' C5' C4' H4' 357.9 185.3
O5' C5' H5'' C4' 239.0 119.2
O5' C5' H5'' H5' 120.0 240.4
C4' C5' H5'' H5' 240.9 121.2
H5'' C5' C4' O4' 240.6 181.3
H5'' C5' C4' C3' 358.4 299.1
H5'' C5' C4' H4' 117.0 64.3
N9 C1' O4' C4' 220.9 218.2
C2' C1' O4' C4' 344.9 342.7
C2' C3' C4' O4' 328.4 25.9
O4' C4' C5' H5' 121.5 302.2
O4' C4' C5' H5'' 240.6 181.3
C5' C4' O4' C3' 124.0 121.5
C5' C4' O4' H4' 239.7 242.0
C3' C4' O4' H4' 115.7 120.5
O4' C4' C3' O3' 210.0 270.6
O4' C4' C3' H3' 88.5 149.7
C4' O4' C1' H1' 104.3 103.1
C4' C3' C2' H2' 144.0 82.2
C4' C3' C2' H2'' 264.0 204.8
C2' C3' C4' O3' 118.4 115.3
C2' C3' C4' H3' 239.9 236.3
C3' C4' C5' H5' 239.4 60.0
C3' C4' C5' H5'' 358.4 299.1
C5' C4' C3' O4' 239.1 241.5
C5' C4' C3' H4' 119.1 123.8
O4' C4' C3' H4' 239.9 242.3
C3' C4' O4' C1' 29.6 354.5
O3' C3' C4' H3' 121.5 120.9
C4' C3' O3' HO3' 293.8 46.6
H4' C4' C5' H5' 357.9 185.3
H4' C4' C5' H5'' 117.0 64.3
C5' C4' H4' O4' 121.7 117.2
C5' C4' H4' C3' 236.2 234.3
O4' C4' H4' C3' 114.5 117.2
H4' C4' O4' C1' 273.9 234.0
H4' C4' C3' O3' 330.0 28.3
H4' C4' C3' H3' 208.5 267.4
N9 C1' O4' C2' 236.0 235.5
N9 C1' O4' H1' 116.7 115.2
O4' C1' C2' C3' 354.4 32.7
O4' C1' C2' H2' 233.6 276.0
O4' C1' C2' H2'' 114.0 154.9
C2' C1' O4' H1' 240.7 239.7
C1' O4' C4' C3' 29.6 354.5
C1' O4' C4' H4' 273.9 234.0
N9 C1' H1' C2' 126.3 125.1
N9 C1' H1' O4' 243.7 242.2
H1' C1' C2' C3' 236.8 274.8
H1' C1' C2' H2' 116.0 158.1
H1' C1' C2' H2'' 356.4 37.0
C2' C1' H1' O4' 117.4 117.1
O3' C3' C2' H2' 261.9 198.4
O3' C3' C2' H2'' 21.9 320.9
C2' C3' O3' C4' 246.2 248.1
C2' C3' O3' H3' 123.6 123.5
O3' C3' C4' H4' 330.0 28.3
C4' C3' O3' H3' 237.4 235.4
H3' C3' C2' H2' 24.2 318.3
H3' C3' C2' H2'' 144.2 80.8
C2' C3' H3' C4' 115.1 117.9
C2' C3' H3' O3' 237.0 239.8
H3' C3' C4' H4' 208.5 267.4
C4' C3' H3' O3' 121.9 121.9
H3' C3' O3' HO3' 56.4 171.2
HO3' O3' C3' H3' 56.4 171.2
C8 C HC1 HC2 239.9 122.9
C8 C HC1 HC3 119.9 237.1
HC2 C HC1 HC3 240.0 114.2
C8 C HC2 HC1 120.0 237.6
C8 C HC2 HC3 240.0 122.3
HC1 C HC2 HC3 120.0 244.7
C8 C HC3 HC1 240.1 122.3
C8 C HC3 HC2 120.0 237.7
HC1 C HC3 HC2 239.9 115.4