PDB Chemical Component 8MC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8MC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C7 |
1.391 |
1.364 |
| C6 |
C5 |
1.391 |
1.394 |
| C7 |
C8 |
1.389 |
1.399 |
| O4 |
C5 |
1.373 |
1.358 |
| O4 |
C11 |
1.427 |
1.429 |
| C5 |
C4 |
1.400 |
1.385 |
| CA |
C |
1.526 |
1.507 |
| CA |
C9 |
1.524 |
1.507 |
| C8 |
C9 |
1.392 |
1.465 |
| C8 |
C2 |
1.399 |
1.407 |
| C |
O |
1.249 |
1.208 |
| C9 |
C10 |
1.384 |
1.359 |
| C4 |
C2 |
1.396 |
1.387 |
| C2 |
O3 |
1.266 |
1.350 |
| C10 |
C1 |
1.397 |
1.410 |
| O3 |
C1 |
1.258 |
1.342 |
| C1 |
O2 |
1.252 |
1.218 |
| CA |
H2 |
1.101 |
1.090 |
| CA |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.080 |
1.079 |
| C7 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C11 |
H7 |
1.100 |
1.090 |
| C11 |
H8 |
1.100 |
1.090 |
| C11 |
H9 |
1.100 |
1.090 |
| C4 |
H10 |
1.081 |
1.081 |
| C |
OXT |
|
1.342 |
| OXT |
H1 |
|
0.967 |
Bond Angles for 8MC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C7 |
H5 |
119.8 |
120.1 |
| C6 |
C5 |
C4 |
119.6 |
120.6 |
| C5 |
C6 |
H6 |
120.0 |
119.8 |
| C7 |
C8 |
C2 |
120.1 |
120.1 |
| O4 |
C5 |
C4 |
121.6 |
119.7 |
| O4 |
C11 |
H7 |
109.5 |
109.5 |
| O4 |
C11 |
H8 |
109.5 |
109.5 |
| O4 |
C11 |
H9 |
109.5 |
109.4 |
| C5 |
C4 |
C2 |
120.5 |
119.8 |
| C5 |
C4 |
H10 |
119.7 |
120.1 |
| CA |
C |
OXT |
|
120.0 |
| CA |
C9 |
C10 |
120.6 |
120.9 |
| C9 |
CA |
H2 |
109.7 |
109.4 |
| C9 |
CA |
H3 |
109.6 |
109.4 |
| C8 |
C2 |
C4 |
119.3 |
119.4 |
| C8 |
C2 |
O3 |
120.5 |
119.9 |
| O |
C |
OXT |
|
120.0 |
| C9 |
C10 |
C1 |
118.0 |
119.8 |
| C9 |
C10 |
H4 |
121.0 |
120.1 |
| C4 |
C2 |
O3 |
120.2 |
120.7 |
| C2 |
C4 |
H10 |
119.8 |
120.1 |
| C10 |
C1 |
O2 |
118.9 |
119.1 |
| C1 |
C10 |
H4 |
121.0 |
120.1 |
| H2 |
CA |
H3 |
109.5 |
109.5 |
| H7 |
C11 |
H8 |
109.5 |
109.5 |
| H7 |
C11 |
H9 |
109.4 |
109.4 |
| H8 |
C11 |
H9 |
109.5 |
109.4 |
| C |
OXT |
H1 |
|
117.1 |
Torsion Angles for 8MC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C7 |
C8 |
C2 |
360.0 |
0.0 |
| C5 |
C6 |
C7 |
H5 |
179.4 |
180.1 |
| O4 |
C5 |
C6 |
C4 |
179.4 |
180.0 |
| C6 |
C5 |
C4 |
C2 |
359.0 |
0.1 |
| C6 |
C5 |
C4 |
H10 |
179.0 |
180.1 |
| C7 |
C8 |
C2 |
C4 |
0.2 |
0.0 |
| C7 |
C8 |
C2 |
O3 |
180.0 |
179.9 |
| C6 |
C5 |
O4 |
C4 |
180.7 |
180.0 |
| O4 |
C5 |
C6 |
H6 |
0.5 |
360.0 |
| O4 |
C5 |
C4 |
C2 |
179.7 |
180.1 |
| O4 |
C5 |
C4 |
H10 |
359.7 |
0.0 |
| C11 |
O4 |
C5 |
C4 |
345.1 |
180.1 |
| H7 |
C11 |
O4 |
H8 |
240.0 |
239.9 |
| H7 |
C11 |
O4 |
H9 |
120.0 |
120.0 |
| H8 |
C11 |
O4 |
H9 |
240.0 |
240.0 |
| C4 |
C5 |
C6 |
H6 |
181.1 |
179.9 |
| C8 |
C2 |
C4 |
C5 |
0.3 |
359.9 |
| C5 |
C4 |
C2 |
O3 |
180.5 |
180.0 |
| C2 |
C4 |
C5 |
H10 |
180.0 |
180.0 |
| O |
C |
CA |
OXT |
|
179.8 |
| CA |
C |
OXT |
H1 |
|
179.7 |
| C9 |
CA |
C |
OXT |
|
180.2 |
| CA |
C9 |
C10 |
C1 |
181.2 |
180.0 |
| CA |
C9 |
C10 |
H4 |
1.2 |
360.0 |
| H2 |
CA |
C9 |
H3 |
120.3 |
119.9 |
| C8 |
C9 |
CA |
H2 |
151.6 |
154.7 |
| C8 |
C9 |
CA |
H3 |
31.4 |
34.8 |
| C8 |
C9 |
C10 |
H4 |
179.4 |
180.2 |
| C5 |
C4 |
C2 |
C8 |
0.3 |
359.9 |
| C4 |
C2 |
C8 |
O3 |
180.2 |
180.1 |
| C8 |
C2 |
C4 |
H10 |
180.3 |
180.0 |
| CA |
C |
O |
OXT |
|
180.2 |
| O |
C |
OXT |
H1 |
|
359.9 |
| C10 |
C9 |
CA |
H2 |
329.7 |
334.9 |
| C10 |
C9 |
CA |
H3 |
209.5 |
215.0 |
| C9 |
C10 |
C1 |
O2 |
179.9 |
180.0 |
| C1 |
C10 |
C9 |
H4 |
180.0 |
180.0 |
| C5 |
C4 |
C2 |
H10 |
180.0 |
180.0 |
| C8 |
C2 |
C4 |
O3 |
179.8 |
179.9 |
| C8 |
C2 |
O3 |
C4 |
180.2 |
180.1 |
| O3 |
C2 |
C4 |
H10 |
0.5 |
0.0 |
| C9 |
C10 |
C1 |
H4 |
180.0 |
180.0 |
| O3 |
C1 |
C10 |
H4 |
180.2 |
180.1 |
| O2 |
C1 |
C10 |
H4 |
359.9 |
0.0 |
| H2 |
CA |
C |
OXT |
|
300.2 |
| H2 |
CA |
C9 |
C10 |
329.7 |
334.9 |
| C9 |
CA |
H2 |
H3 |
239.6 |
240.1 |
| H3 |
CA |
C |
OXT |
|
60.3 |
| H3 |
CA |
C9 |
C10 |
209.5 |
215.0 |
| C9 |
CA |
H3 |
H2 |
120.4 |
119.9 |
| C9 |
C10 |
H4 |
C1 |
180.0 |
180.0 |
| H4 |
C10 |
C1 |
O2 |
359.9 |
0.0 |
| H5 |
C7 |
C8 |
C2 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
H5 |
359.4 |
0.1 |
| H6 |
C6 |
C5 |
C4 |
181.1 |
179.9 |
| O4 |
C11 |
H7 |
H8 |
120.0 |
120.1 |
| O4 |
C11 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C11 |
H7 |
H9 |
120.0 |
120.0 |
| O4 |
C11 |
H8 |
H7 |
239.9 |
239.9 |
| O4 |
C11 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
C11 |
H8 |
H9 |
240.0 |
240.0 |
| O4 |
C11 |
H9 |
H7 |
120.0 |
120.0 |
| O4 |
C11 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C11 |
H9 |
H8 |
120.0 |
120.0 |
| C5 |
C4 |
H10 |
C2 |
180.0 |
180.0 |
| H10 |
C4 |
C2 |
O3 |
0.5 |
0.0 |