PDB Chemical Component 8M1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8M1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.516 1.508
O3 C2 1.218 1.212
C2 N4 1.381 1.348
N4 C24 1.421 1.399
N4 C5 1.492 1.465
C29 C24 1.398 1.389
C29 C28 1.380 1.380
C24 C25 1.409 1.389
C28 C27 1.400 1.393
C25 C26 1.389 1.379
C5 C7 1.536 1.530
C5 C12 1.533 1.530
C7 C8 1.540 1.529
C27 C26 1.405 1.394
C27 C30 1.489 1.485
C35 C30 1.373 1.364
C35 N33 1.348 1.349
C30 C31 1.418 1.408
C34 N33 1.462 1.465
N33 N32 1.413 1.400
C31 N32 1.312 1.306
C8 C9 1.543 1.530
C12 C11 1.527 1.529
C11 C9 1.535 1.531
C9 N13 1.478 1.465
N13 C14 1.387 1.382
N23 C14 1.333 1.319
N23 C22 1.359 1.339
C14 N15 1.343 1.332
C21 C22 1.413 1.402
C21 C20 1.365 1.363
C22 C17 1.430 1.419
N15 C16 1.328 1.317
C20 C19 1.404 1.394
C17 C16 1.409 1.407
C17 C18 1.408 1.402
C19 C18 1.370 1.362
C5 H1 1.100 1.090
C7 H2 1.100 1.089
C7 H3 1.100 1.090
C8 H4 1.100 1.090
C8 H5 1.100 1.090
C20 H6 1.080 1.080
C21 H7 1.080 1.080
C26 H8 1.080 1.079
C28 H9 1.080 1.080
C1 H10 1.100 1.089
C1 H11 1.100 1.090
C1 H12 1.099 1.090
C9 H13 1.100 1.089
C11 H14 1.100 1.090
C11 H15 1.100 1.090
C12 H16 1.100 1.090
C12 H17 1.100 1.090
N13 H18 1.000 0.970
C16 H19 1.080 1.080
C18 H20 1.080 1.080
C19 H21 1.080 1.080
C25 H22 1.080 1.079
C29 H23 1.080 1.080
C31 H24 1.080 1.080
C34 H25 1.100 1.090
C34 H26 1.100 1.090
C34 H27 1.100 1.090
C35 H28 1.080 1.080

Bond Angles for 8M1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 N4 122.8 120.0
C2 C1 H10 109.5 109.5
C2 C1 H11 109.5 109.5
C2 C1 H12 109.5 109.5
O3 C2 N4 120.9 120.1
N4 C24 C25 122.2 119.9
N4 C5 C12 108.7 109.5
N4 C5 H1 108.3 109.5
C29 C28 H9 119.8 120.0
C24 C25 C26 120.5 120.0
C24 C25 H22 119.7 120.0
C28 C27 C30 117.3 120.0
C27 C28 H9 119.8 120.0
C25 C26 H8 120.5 120.0
C7 C5 C12 111.5 109.5
C5 C7 C8 111.5 109.5
C7 C5 H1 107.8 109.5
C5 C7 H2 109.0 109.5
C5 C7 H3 109.0 109.4
C5 C12 C11 110.4 109.5
C12 C5 H1 107.8 109.4
C5 C12 H16 109.2 109.5
C5 C12 H17 109.2 109.4
C7 C8 C9 110.3 109.5
C8 C7 H2 109.0 109.5
C8 C7 H3 109.0 109.4
C7 C8 H4 109.3 109.5
C7 C8 H5 109.3 109.5
C27 C26 H8 120.5 120.0
C27 C30 C31 127.9 126.2
C30 C31 N32 107.5 108.1
C30 C31 H24 126.2 125.9
N32 C31 H24 126.2 126.0
C8 C9 N13 114.3 109.5
C9 C8 H4 109.3 109.4
C9 C8 H5 109.3 109.5
C8 C9 H13 108.5 109.5
C12 C11 H14 109.7 109.5
C12 C11 H15 109.7 109.5
C11 C9 N13 107.5 109.5
C11 C9 H13 108.6 109.5
C9 N13 C14 124.3 120.0
N13 C9 H13 109.4 109.5
C9 N13 H18 105.6 120.0
N13 C14 N15 117.0 118.7
C14 N13 H18 105.7 120.0
C14 N15 C16 122.8 121.6
C22 C21 H7 119.8 120.2
C21 C20 C19 120.9 121.0
C21 C20 H6 119.5 119.5
C22 C17 C16 118.4 118.4
C22 C17 C18 119.8 119.6
C17 C16 N15 117.9 118.5
N15 C16 H19 121.0 120.7
C20 C19 C18 120.7 121.0
C19 C20 H6 119.5 119.5
C20 C19 H21 119.6 119.5
C16 C17 C18 121.8 122.1
C17 C16 H19 121.0 120.8
C17 C18 H20 120.1 120.2
C19 C18 H20 120.1 120.2
H2 C7 H3 109.4 109.5
H4 C8 H5 109.5 109.5
H10 C1 H11 109.5 109.5
H10 C1 H12 109.5 109.5
H11 C1 H12 109.5 109.5
H14 C11 H15 109.5 109.4
H16 C12 H17 109.5 109.5
H25 C34 H26 109.4 109.4
H25 C34 H27 109.5 109.5
H26 C34 H27 109.5 109.5

Torsion Angles for 8M1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3 C2 C1 N4 180.4 180.0
H10 C1 C2 H11 240.0 240.0
H10 C1 C2 H12 120.0 120.0
H11 C1 C2 H12 240.0 240.0
C1 C2 O3 N4 179.6 180.0
O3 C2 C1 H10 0.0 274.3
O3 C2 C1 H11 120.0 34.3
O3 C2 C1 H12 240.0 154.3
N4 C2 C1 H10 179.6 94.3
N4 C2 C1 H11 299.6 214.3
N4 C2 C1 H12 59.6 334.3
C2 N4 C24 C25 270.6 7.2
C2 N4 C5 C12 140.5 114.4
C2 N4 C5 H1 23.6 354.4
C24 N4 C5 C12 321.1 294.3
C24 N4 C5 H1 204.2 174.4
N4 C24 C25 C26 179.9 180.0
N4 C24 C25 H22 359.9 360.0
C7 C5 N4 C12 124.1 120.0
C7 C5 N4 H1 241.0 240.0
N4 C5 C7 H2 305.7 300.0
N4 C5 C7 H3 65.1 60.0
N4 C5 C12 C11 180.3 180.0
C12 C5 N4 H1 116.9 120.0
N4 C5 C12 H16 300.4 300.0
N4 C5 C12 H17 60.1 60.0
C29 C24 C25 H22 180.1 180.3
C29 C28 C27 C30 179.8 180.8
C27 C28 C29 H9 180.0 179.1
C24 C25 C26 H8 179.5 179.9
C29 C28 C27 H9 180.0 180.9
C28 C27 C26 H8 180.8 179.5
C28 C27 C30 C31 177.5 0.1
C24 C25 C26 H22 180.0 180.0
C27 C26 C25 H8 180.0 180.1
N4 C5 C7 C12 237.5 240.0
N4 C5 C7 H1 119.4 120.0
C7 C5 C12 C11 55.6 60.0
C12 C5 C7 H1 241.9 240.0
C7 C5 C12 H16 175.7 180.0
C7 C5 C12 H17 295.4 300.0
C5 C7 C8 C9 54.8 60.0
C8 C7 C5 H2 239.7 240.0
C8 C7 C5 H3 120.3 119.9
C5 C7 C8 H4 174.9 180.0
C5 C7 C8 H5 294.7 300.0
H2 C7 C5 H3 240.6 240.0
N4 C5 C12 H1 242.8 240.0
C12 C5 C7 C8 307.9 300.0
C7 C5 C12 H1 118.1 120.0
C12 C5 C7 H2 68.2 60.1
C12 C5 C7 H3 187.6 180.1
C5 C12 C11 H14 58.3 180.0
C5 C12 C11 H15 178.6 60.0
H16 C12 C5 H17 240.3 240.0
C8 C7 C5 C12 307.9 300.0
C8 C7 C5 H1 66.1 60.0
C5 C7 C8 H2 120.3 120.0
C5 C7 C8 H3 239.7 240.1
C7 C8 C9 N13 179.6 180.0
C9 C8 C7 H4 239.9 240.0
C9 C8 C7 H5 120.1 120.0
C7 C8 C9 H13 57.2 59.9
H2 C7 C8 H3 119.4 120.0
H4 C8 C7 H5 240.2 240.0
C25 C26 C27 H8 180.0 179.9
C30 C27 C28 H9 359.8 360.0
C30 C27 C26 H8 0.3 359.5
C27 C30 C31 N32 180.4 180.0
C27 C30 C31 H24 0.3 359.9
C35 C30 C31 H24 180.5 180.2
N32 C31 C30 H24 180.0 180.1
N33 N32 C31 H24 179.6 180.1
C30 C31 N32 H24 180.0 179.9
C9 C8 C7 H2 294.5 300.0
C9 C8 C7 H3 175.1 180.0
C7 C8 C9 H4 120.1 120.0
C7 C8 C9 H5 239.9 240.0
C11 C9 C8 N13 119.9 120.0
C11 C9 C8 H13 242.2 240.0
C8 C9 N13 C14 285.9 205.0
N13 C9 C8 H13 122.4 120.0
C8 C9 N13 H18 47.9 25.0
H4 C8 C9 H5 119.8 120.0
C11 C12 C5 H1 297.5 300.0
C5 C12 C11 H16 120.1 120.0
C5 C12 C11 H17 239.9 240.0
C12 C11 C9 N13 187.9 180.0
C12 C11 C9 H13 306.1 300.0
H14 C11 C12 H15 239.7 120.0
C5 C12 C11 C9 298.5 300.1
C8 C9 C11 N13 235.9 240.0
C11 C9 C8 H4 179.3 180.0
C11 C9 C8 H5 59.6 60.0
C8 C9 C11 H13 117.7 120.0
C11 C9 N13 C14 165.6 85.0
N13 C9 C11 H13 241.8 240.0
C11 C9 N13 H18 287.6 265.0
N13 C9 C8 H4 59.5 60.0
N13 C9 C8 H5 299.7 300.0
C8 C9 N13 H13 238.1 240.0
C11 C9 N13 H13 117.7 120.0
C9 N13 C14 N15 155.6 360.0
C14 N13 C9 H18 238.0 180.0
C14 N13 C9 H13 47.9 325.0
C9 N13 C14 H18 122.0 180.0
N13 C14 N15 C16 178.9 180.0
N23 C14 N13 H18 213.0 359.4
N23 C22 C21 H7 358.2 360.0
N15 C14 N13 H18 33.6 180.0
C17 C16 N15 C14 1.7 359.5
C14 N15 C16 H19 181.7 179.5
C22 C21 C20 C19 1.8 359.7
C22 C21 C20 H6 181.8 180.0
C21 C22 C17 C16 180.1 180.0
C21 C22 C17 C18 359.8 0.3
C21 C20 C19 C18 358.9 0.3
C19 C20 C21 H6 180.0 179.7
C21 C20 C19 H21 179.0 180.0
C22 C17 C16 N15 358.2 0.3
C16 C17 C22 C18 180.3 179.7
C22 C17 C16 H19 178.3 180.2
C22 C17 C18 H20 180.8 179.7
N15 C16 C17 C18 178.5 180.0
C17 C16 N15 H19 180.0 180.0
C21 C20 C19 H6 180.0 180.3
C20 C19 C18 H20 179.8 180.0
C14 N15 C16 C17 1.7 359.5
C22 C17 C16 C18 179.7 180.3
N15 C16 C17 H19 180.0 180.0
C16 C17 C18 H20 0.6 0.0
C22 C17 C18 C16 180.3 179.7
C18 C17 C16 N15 178.5 180.0
C20 C19 C18 C17 359.7 360.0
C18 C17 C16 H19 358.5 359.9
C19 C18 C17 H20 180.0 180.0
C18 C19 C20 H6 178.9 180.0
C20 C19 C18 H21 180.0 179.7
C17 C18 C19 H20 180.0 180.0
N4 C5 H1 C12 117.5 120.0
C7 C5 H1 C12 239.5 240.0
H1 C5 C7 C8 66.1 60.0
H1 C5 C7 H2 186.4 180.0
H1 C5 C7 H3 305.7 300.0
H1 C5 C12 C11 297.5 300.0
H1 C5 C12 H16 57.6 60.0
H1 C5 C12 H17 177.3 180.0
H2 C7 C5 C12 68.2 60.1
C5 C7 H2 C8 238.2 240.0
H2 C7 C5 H1 186.4 180.0
C5 C7 H2 H3 119.1 120.0
H2 C7 C8 C9 294.5 300.0
C8 C7 H2 H3 240.9 240.0
H2 C7 C8 H4 54.6 60.0
H2 C7 C8 H5 174.4 180.0
H3 C7 C5 C12 187.6 180.1
C5 C7 H3 C8 121.9 120.0
H3 C7 C5 H1 305.7 300.0
C5 C7 H3 H2 240.9 240.0
H3 C7 C8 C9 175.1 180.0
C8 C7 H3 H2 119.1 120.1
H3 C7 C8 H4 295.2 300.0
H3 C7 C8 H5 55.0 60.0
C7 C8 H4 C9 239.3 240.0
H4 C8 C7 H2 54.6 60.0
H4 C8 C7 H3 295.2 300.0
C7 C8 H4 H5 119.7 120.0
H4 C8 C9 N13 59.5 60.0
C9 C8 H4 H5 240.4 240.0
H4 C8 C9 H13 297.1 300.0
C7 C8 H5 C9 120.7 120.0
H5 C8 C7 H2 174.4 180.0
H5 C8 C7 H3 55.0 60.0
C7 C8 H5 H4 240.4 240.0
H5 C8 C9 N13 299.7 300.0
C9 C8 H5 H4 119.6 120.0
H5 C8 C9 H13 177.3 180.0
C21 C20 H6 C19 180.0 179.7
H6 C20 C19 C18 178.9 180.0
H6 C20 C19 H21 359.0 359.7
H7 C21 C20 C19 181.7 179.7
H7 C21 C20 H6 1.7 0.1
H9 C28 C27 C30 359.8 360.0
H10 C1 C2 N4 179.6 94.3
C2 C1 H10 H11 120.0 120.0
C2 C1 H10 H12 240.0 240.0
H11 C1 H10 H12 120.0 120.0
H11 C1 C2 N4 299.6 214.3
C2 C1 H11 H10 240.0 240.0
C2 C1 H11 H12 120.0 120.0
H10 C1 H11 H12 240.0 240.0
H12 C1 C2 N4 59.6 334.3
C2 C1 H12 H10 120.0 120.0
C2 C1 H12 H11 240.0 240.0
H10 C1 H12 H11 120.0 120.0
C8 C9 H13 N13 125.4 120.1
H13 C9 C8 H4 297.1 300.0
H13 C9 C8 H5 177.3 180.0
C11 C9 H13 N13 243.0 240.0
H13 C9 N13 C14 47.9 325.0
H13 C9 N13 H18 169.8 145.0
C12 C11 H14 H15 120.4 240.0
H14 C11 C9 N13 68.0 300.1
H14 C11 C9 H13 186.2 60.1
C12 C11 H15 H14 239.6 120.0
H15 C11 C9 N13 307.7 60.0
H15 C11 C9 H13 66.0 180.0
C5 C12 H16 C11 239.1 240.0
H16 C12 C5 H1 57.6 60.0
C5 C12 H16 H17 119.5 120.0
H16 C12 C11 H14 298.2 60.0
H16 C12 C11 H15 58.4 300.0
C5 C12 H17 C11 120.9 120.0
H17 C12 C5 H1 177.3 180.0
C5 C12 H17 H16 240.5 240.0
H17 C12 C11 H14 178.5 300.0
H17 C12 C11 H15 298.7 180.0
C9 N13 H18 C14 226.7 180.0
H18 N13 C9 H13 169.8 145.0
H18 N13 C14 N15 33.6 180.0
C17 C16 H19 N15 180.0 180.0
H19 C16 C17 C18 358.5 359.9
C20 C19 H21 C18 180.0 180.3
H21 C19 C20 H6 359.0 359.7
H21 C19 C18 H20 359.7 0.3
C24 C25 H22 C26 180.0 180.0
H22 C25 C26 H8 359.5 359.9
H23 C29 C28 H9 0.3 0.3
C30 C31 H24 N32 180.0 180.1
H26 C34 H25 H27 120.0 120.0
H25 C34 H26 H27 240.0 240.0
H25 C34 H27 H26 120.0 120.0