PDB Chemical Component 8KD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8KD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O26	C8	1.420	1.429
C5	C8	1.528	1.530
C5	C4	1.534	1.530
C5	C6	1.533	1.530
C8	C9	1.527	1.531
C4	C3	1.538	1.530
C6	C1	1.536	1.530
C9	C10	1.535	1.530
C9	C7	1.531	1.530
C10	C3	1.537	1.530
C3	C2	1.556	1.530
C1	C7	1.535	1.530
C1	C2	1.554	1.530
C11	C2	1.562	1.530
C11	C14	1.509	1.507
C2	C12	1.569	1.530
C21	C14	1.389	1.383
C21	C20	1.386	1.382
C14	C13	1.389	1.382
C20	C19	1.380	1.383
C12	C15	1.514	1.507
C13	C18	1.385	1.382
C19	C18	1.381	1.383
C15	O17	1.219	1.213
C15	N16	1.351	1.348
N16	C22	1.463	1.476
N16	C24	1.464	1.475
C22	C23	1.565	1.539
C24	C23	1.558	1.540
C23	O25	1.429	1.429
C13	H44	1.080	1.079
C18	H45	1.080	1.080
C19	H46	1.080	1.080
C20	H47	1.080	1.079
C21	H48	1.080	1.080
C22	H50	1.100	1.089
C22	H49	1.100	1.090
C23	H51	1.100	1.090
C24	H52	1.100	1.090
C24	H53	1.100	1.090
C11	H40	1.100	1.090
C11	H41	1.100	1.091
C12	H42	1.100	1.091
C12	H43	1.100	1.090
C1	H27	1.099	1.090
C3	H28	1.100	1.090
C4	H29	1.100	1.090
C4	H30	1.100	1.090
C5	H31	1.100	1.090
C6	H33	1.100	1.090
C6	H32	1.100	1.090
C7	H34	1.100	1.090
C7	H35	1.100	1.089
C8	H36	1.100	1.090
C9	H37	1.100	1.090
C10	H39	1.100	1.090
C10	H38	1.100	1.090
O25	H54	0.950	0.967
O26	H55	0.950	0.967

Bond Angles for 8KD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O26	C8	H36	109.4	109.5
C6	C5	C8	108.8	109.5
C5	C8	C9	109.3	109.4
C8	C5	H31	109.7	109.4
C5	C8	H36	107.9	109.5
C5	C4	H29	109.5	109.5
C5	C4	H30	109.5	109.5
C6	C5	H31	109.7	109.4
C5	C6	H33	109.5	109.5
C5	C6	H32	109.5	109.5
C8	C9	C10	109.7	109.5
C9	C8	H36	108.0	109.5
C8	C9	H37	109.8	109.4
C4	C3	H28	108.3	109.5
C6	C1	C7	107.3	109.5
C6	C1	H27	108.1	109.5
C10	C9	H37	109.7	109.5
C9	C10	H39	109.4	109.5
C9	C10	H38	109.4	109.5
C9	C7	H34	109.5	109.4
C9	C7	H35	109.5	109.5
C10	C3	H28	108.3	109.5
C2	C1	C7	112.9	109.5
C7	C1	H27	108.1	109.5
C1	C7	H34	109.5	109.4
C1	C7	H35	109.5	109.5
C11	C2	C1	107.7	109.5
C2	C1	H27	107.9	109.5
C2	C11	C14	118.3	109.5
C11	C2	C12	111.3	109.4
C2	C11	H40	107.2	109.5
C2	C11	H41	107.2	109.5
C21	C14	C11	121.0	120.0
C14	C11	H40	107.2	109.5
C14	C11	H41	107.2	109.5
C2	C12	H42	107.2	109.5
C2	C12	H43	107.2	109.5
C14	C21	H48	119.6	119.9
C21	C20	H47	119.9	120.0
C14	C13	H44	119.6	120.0
C20	C19	H46	120.2	120.0
C12	C15	O17	120.1	120.0
C12	C15	N16	118.7	120.0
C18	C13	H44	119.6	120.0
C13	C18	H45	119.9	120.0
C19	C18	H45	120.0	119.9
N16	C15	O17	121.2	120.0
C15	N16	C22	134.4	134.5
C15	N16	C24	131.2	134.5
N16	C22	H50	114.6	113.8
N16	C22	H49	114.6	113.9
N16	C24	H52	114.6	113.8
N16	C24	H53	114.6	113.9
C22	C23	O25	110.8	113.8
C23	C22	H50	114.7	113.8
C23	C22	H49	114.7	113.8
C22	C23	H51	113.7	113.7
C24	C23	O25	112.2	113.7
C24	C23	H51	113.8	113.8
O25	C23	H51	116.1	113.0
C23	O25	H54	109.5	114.0
H50	C22	H49	109.5	112.9
H52	C24	H53	109.5	113.0
H40	C11	H41	109.4	109.4
H42	C12	H43	109.5	109.4
H29	C4	H30	109.5	109.5
H33	C6	H32	109.5	109.5
H34	C7	H35	109.5	109.5
H39	C10	H38	109.5	109.4

Torsion Angles for 8KD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O26	C8	C5	H31	56.4	60.1
C5	C8	O26	H36	241.0	240.0
C9	C8	O26	H36	119.2	120.0
O26	C8	C9	H37	303.5	300.0
O26	C8	C5	H36	119.8	120.0
C8	C5	C4	H29	58.1	180.0
C8	C5	C4	H30	178.1	60.0
C6	C5	C8	H31	120.0	119.9
C8	C5	C6	H33	181.9	300.0
C8	C5	C6	H32	302.0	180.1
C5	C8	C9	C10	301.3	300.0
C9	C8	C5	H36	242.8	240.0
C5	C8	C9	H37	180.7	180.0
C5	C4	C3	H28	179.0	180.0
H29	C4	C5	H30	240.0	120.0
C6	C5	C8	C9	299.4	300.0
C8	C5	C6	H31	240.0	240.1
C6	C5	C8	H36	56.6	60.0
C6	C5	C4	H29	177.2	300.0
C6	C5	C4	H30	297.2	180.0
C5	C6	C1	C7	297.8	300.0
C5	C6	C1	H27	181.4	180.0
H33	C6	C5	H32	240.0	120.0
O26	C8	C9	H36	240.0	240.0
C9	C8	C5	H31	179.4	180.0
C5	C8	C9	H36	117.2	120.0
C10	C9	C8	H37	120.6	120.0
C8	C9	C10	H39	181.3	300.0
C8	C9	C10	H38	301.2	180.0
C8	C9	C7	H34	58.1	180.0
C8	C9	C7	H35	178.2	60.0
C10	C3	C4	H28	243.5	240.0
C2	C1	C6	C7	124.7	120.0
C7	C1	C6	H27	116.3	120.0
C6	C1	C7	H34	302.2	180.0
C6	C1	C7	H35	182.2	300.0
C2	C1	C6	H27	241.0	240.0
C10	C9	C8	H36	184.1	180.0
C8	C9	C10	H37	239.3	240.0
C10	C9	C7	H34	177.8	300.0
C10	C9	C7	H35	297.8	180.0
C9	C10	C3	H28	181.4	180.0
H39	C10	C9	H38	240.1	120.0
C5	C8	C9	C7	60.5	60.0
C9	C7	C1	H27	178.5	180.0
C1	C7	C9	H34	240.0	119.9
C1	C7	C9	H35	120.0	240.0
H34	C7	C9	H35	240.0	120.0
C4	C3	C10	H28	116.4	120.0
C3	C2	C1	C7	60.4	60.0
C3	C2	C1	H27	179.8	180.0
C3	C2	C11	C14	270.6	185.4
C3	C2	C11	H40	31.8	305.5
C3	C2	C11	H41	149.3	65.4
C3	C2	C12	H42	288.9	301.3
C3	C2	C12	H43	46.4	181.4
C6	C1	C7	H27	243.7	240.0
C9	C7	C1	H34	120.0	240.1
C9	C7	C1	H35	240.0	120.0
C11	C2	C1	C7	177.5	180.0
C2	C1	C7	H27	119.3	120.0
H34	C7	C1	H35	120.0	239.9
C6	C1	C2	C7	238.5	240.0
C6	C1	C2	H27	119.1	120.0
C7	C1	C2	H27	240.6	240.0
C2	C1	C7	H34	177.8	60.0
C2	C1	C7	H35	57.8	180.0
C1	C2	C11	C14	158.4	65.4
C11	C2	C1	C12	237.2	240.0
C1	C2	C11	H40	279.6	185.4
C1	C2	C11	H41	37.1	305.4
C1	C2	C12	H42	44.0	61.3
C1	C2	C12	H43	161.5	301.4
C11	C2	C1	H27	296.9	300.0
C21	C14	C11	C2	65.4	94.8
C14	C11	C2	H40	238.7	239.9
C14	C11	C2	H41	121.3	120.0
C11	C2	C12	H42	164.8	181.4
C11	C2	C12	H43	282.3	61.4
H40	C11	C2	H41	242.6	240.1
C14	C11	C2	C1	158.4	65.4
C14	C11	C2	C12	35.1	305.4
C2	C11	C14	H40	121.3	120.0
C2	C11	C14	H41	238.7	240.0
C11	C14	C21	H48	1.5	359.4
C11	C14	C13	H44	358.5	0.3
H40	C11	C14	H41	117.4	120.0
C11	C2	C12	C1	120.8	120.0
C12	C2	C11	C14	35.1	305.4
C12	C2	C11	H40	156.3	65.4
C12	C2	C11	H41	273.8	185.3
C2	C12	C15	O17	40.0	357.2
C2	C12	C15	N16	221.8	177.2
H42	C12	C2	H43	242.5	120.0
C2	C11	C14	C21	65.4	94.8
C21	C14	C11	H40	304.1	334.7
C21	C14	C11	H41	186.7	214.8
C14	C21	C20	H47	179.5	179.7
C21	C14	C13	H44	178.8	179.7
C21	C20	C19	H46	179.9	180.0
C18	C13	C14	H44	180.0	179.7
C14	C13	C18	H45	180.7	180.3
C20	C19	C18	H45	180.0	180.0
N16	C15	C12	O17	181.8	180.0
C12	C15	N16	C22	15.4	180.0
C12	C15	N16	C24	190.2	0.0
C14	C13	C18	H44	180.0	180.3
C19	C18	C13	H45	180.0	180.1
C19	C18	C13	H44	180.7	180.1
C13	C18	C19	H45	180.0	179.9
C12	C15	O17	N16	181.9	180.0
O17	C15	N16	C22	197.2	0.0
O17	C15	N16	C24	12.1	180.0
C12	C15	N16	O17	178.1	180.0
C15	N16	C22	H50	277.3	41.1
C15	N16	C22	H49	45.1	269.7
C15	N16	C24	H52	314.8	90.3
C15	N16	C24	H53	82.6	318.9
C22	N16	C15	O17	197.2	0.0
C15	N16	C22	C24	176.1	180.0
N16	C22	C23	O25	126.5	138.0
C23	C22	N16	H50	243.9	114.3
C23	C22	N16	H49	116.1	245.7
N16	C22	C23	H51	259.3	269.2
H50	C22	N16	H49	232.1	131.3
C24	N16	C15	O17	12.1	180.0
C15	N16	C24	C22	183.7	180.0
C24	N16	C22	H50	101.2	221.0
C24	N16	C22	H49	229.0	89.7
N16	C24	C23	O25	234.9	222.0
N16	C24	C23	H51	100.6	90.7
H52	C24	N16	H53	232.2	131.4
C15	N16	C22	C23	161.2	155.4
N16	C22	C23	H50	116.0	245.7
N16	C22	C23	H49	243.9	114.4
C24	C23	C22	O25	247.5	245.6
C24	C23	C22	H51	114.6	114.4
O25	C23	C22	H51	227.1	228.8
C22	C23	O25	H54	180.0	180.0
H50	C22	C23	H49	127.9	228.7
C15	N16	C24	C23	198.7	204.6
C22	C23	C24	O25	111.2	114.4
C24	C23	C22	H50	257.9	137.9
C24	C23	C22	H49	130.0	269.2
C22	C23	C24	H51	245.5	245.6
O25	C23	C24	H51	134.3	131.3
C24	C23	O25	H54	275.2	276.7
O25	C23	C22	H50	10.5	252.2
O25	C23	C22	H49	242.5	23.5
C22	C23	O25	H51	131.6	131.6
C24	C23	O25	H51	226.8	228.3
H44	C13	C18	H45	0.7	0.0
H45	C18	C13	H44	0.7	0.0
H46	C19	C18	H45	360.0	0.1
H47	C20	C19	H46	359.9	0.0
H48	C21	C14	C11	1.5	359.4
H48	C21	C20	H47	359.5	0.3
N16	C22	H50	H49	130.4	228.2
H50	C22	C23	O25	10.5	252.2
C23	C22	H50	H49	229.5	131.7
H50	C22	C23	H51	143.3	23.5
N16	C22	H49	H50	229.6	131.7
H49	C22	C23	O25	242.5	23.5
C23	C22	H49	H50	130.5	228.3
H49	C22	C23	H51	15.4	154.8
C22	C23	H51	O25	229.7	228.4
H51	C23	C22	H50	143.3	23.5
H51	C23	C22	H49	15.4	154.8
C24	C23	H51	O25	132.4	131.7
H51	C23	O25	H54	48.4	48.3
N16	C24	H52	H53	130.4	228.1
H52	C24	C23	O25	118.8	336.3
H52	C24	C23	H51	344.5	205.0
N16	C24	H53	H52	229.7	131.8
H53	C24	C23	O25	351.0	107.6
H53	C24	C23	H51	216.7	336.3
H40	C11	C2	C1	279.6	185.4
C2	C11	H40	C14	232.0	240.0
H40	C11	C2	C12	156.3	65.4
C2	C11	H40	H41	116.0	120.0
C14	C11	H40	H41	244.0	240.0
H41	C11	C2	C1	37.1	305.4
C2	C11	H41	C14	128.0	120.0
H41	C11	C2	C12	273.8	185.3
C2	C11	H41	H40	244.0	240.0
C14	C11	H41	H40	116.0	120.0
C2	C12	H42	H43	116.0	240.0
H42	C12	C15	O17	278.7	117.2
H42	C12	C15	N16	100.6	297.2
C2	C12	H43	H42	244.0	120.0
H43	C12	C15	O17	161.2	237.1
H43	C12	C15	N16	343.1	57.1
C6	C1	H27	C7	115.8	120.0
C2	C1	H27	C7	237.6	239.9
H27	C1	C7	H34	58.5	299.9
H27	C1	C7	H35	298.5	60.0
C5	C4	H29	H30	120.0	240.0
H29	C4	C3	H28	59.0	300.0
C5	C4	H30	H29	240.0	120.0
H30	C4	C3	H28	299.0	60.0
C6	C5	H31	C8	240.6	240.0
H31	C5	C8	C9	179.4	180.0
H31	C5	C8	H36	296.6	300.0
H31	C5	C4	H29	297.6	60.0
H31	C5	C4	H30	57.6	300.0
H31	C5	C6	H33	301.9	60.0
H31	C5	C6	H32	62.0	300.0
H33	C6	C5	C8	181.9	300.0
H33	C6	C5	H31	301.9	60.0
C5	C6	H33	H32	120.0	240.0
H33	C6	C1	C7	177.8	60.0
H33	C6	C1	H27	61.5	300.0
H32	C6	C5	C8	302.0	180.1
H32	C6	C5	H31	62.0	300.0
C5	C6	H32	H33	240.0	120.0
H32	C6	C1	C7	57.7	180.0
H32	C6	C1	H27	301.4	60.0
C9	C7	H34	H35	120.0	240.0
H34	C7	C1	H27	58.5	299.9
C1	C7	H34	H35	240.0	120.0
C9	C7	H35	H34	240.0	120.0
H35	C7	C1	H27	298.5	60.0
C1	C7	H35	H34	120.0	240.0
C5	C8	H36	C9	241.9	240.0
H36	C8	C5	H31	296.6	300.0
H36	C8	C9	C10	184.1	180.0
H36	C8	C9	H37	63.5	60.0
C8	C9	H37	C10	120.6	120.0
H37	C9	C8	H36	63.5	60.0
H37	C9	C10	H39	302.0	60.0
H37	C9	C10	H38	61.9	300.0
H37	C9	C7	H34	297.9	60.1
H37	C9	C7	H35	58.0	300.0
H39	C10	C9	H37	302.0	60.0
C9	C10	H39	H38	119.9	240.0
H39	C10	C3	H28	61.4	300.0
H38	C10	C9	H37	61.9	300.0
C9	C10	H38	H39	240.1	120.0
H38	C10	C3	H28	301.4	60.0
H54	O25	C23	H51	48.4	48.3
H55	O26	C8	H36	298.9	300.0