Atom Nomenclature for 8K6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8K6

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
H11C H11C
H12C H12C
H13C H13C
H21C H21C
H22C H22C
H31C H31C
H32C H32C
H41C H41C
H42C H42C
H51C H51C
H52C H52C
H61C H61C
H62C H62C
H71C H71C
H72C H72C
H81C H81C
H82C H82C
H91C H91C
H92C H92C
H101 H101
H102 H102
H111 H111
H112 H112
H121 H121
H122 H122
H131 H131
H132 H132
H141 H141
H142 H142
H151 H151
H152 H152
H161 H161
H162 H162
H171 H171
H172 H172
H181 H181
H182 H182
H183 H183