PDB Chemical Component 8JC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8JC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
FAI |
CBT |
1.219 |
1.399 |
FAH |
CBT |
1.225 |
1.399 |
FAG |
CBT |
1.149 |
1.399 |
CBT |
C5 |
1.387 |
1.506 |
C5 |
C6 |
1.381 |
1.381 |
C5 |
C4 |
1.390 |
1.397 |
C6 |
N1 |
1.386 |
1.325 |
NBC |
C4 |
1.326 |
1.386 |
NBC |
CBJ |
1.329 |
1.398 |
C4 |
N3 |
1.336 |
1.329 |
CBJ |
CAM |
1.382 |
1.389 |
CBJ |
CAQ |
1.396 |
1.388 |
CAM |
CAK |
1.381 |
1.382 |
N1 |
C2 |
1.335 |
1.325 |
CAQ |
CBI |
1.391 |
1.387 |
OAF |
CBH |
1.226 |
1.216 |
N3 |
C2 |
1.335 |
1.324 |
CAK |
CAL |
1.385 |
1.381 |
C2 |
NBD |
1.319 |
1.385 |
CBI |
CAL |
1.385 |
1.390 |
CBI |
NBB |
1.332 |
1.399 |
CBH |
NBB |
1.336 |
1.348 |
CBH |
CAT |
1.531 |
1.471 |
CAS |
CAT |
1.530 |
1.330 |
NBD |
CBM |
1.319 |
1.403 |
CAO |
CBM |
1.381 |
1.386 |
CAO |
CAN |
1.389 |
1.383 |
CBM |
CBN |
1.379 |
1.394 |
CAN |
CBK |
1.392 |
1.388 |
CBN |
OBE |
1.350 |
1.360 |
CBN |
CAR |
1.378 |
1.385 |
OBE |
CAA |
1.417 |
1.430 |
CBK |
CAR |
1.384 |
1.389 |
CBK |
NBS |
1.336 |
1.399 |
CAW |
NBS |
1.474 |
1.469 |
CAW |
CAU |
1.527 |
1.533 |
NBS |
CAX |
1.477 |
1.469 |
CAU |
NBR |
1.481 |
1.470 |
CAX |
CAV |
1.527 |
1.532 |
NBR |
CAV |
1.475 |
1.471 |
NBR |
CBG |
1.340 |
1.349 |
OAE |
CBG |
1.229 |
1.213 |
CBG |
CAB |
1.529 |
1.507 |
C6 |
H1 |
1.080 |
1.080 |
CAA |
H2 |
1.100 |
1.090 |
CAA |
H3 |
1.100 |
1.090 |
CAA |
H4 |
1.100 |
1.090 |
CAB |
H5 |
1.100 |
1.090 |
CAB |
H6 |
1.101 |
1.090 |
CAB |
H7 |
1.100 |
1.089 |
CAK |
H8 |
1.080 |
1.081 |
CAL |
H9 |
1.080 |
1.080 |
CAM |
H10 |
1.080 |
1.080 |
CAN |
H11 |
1.080 |
1.080 |
CAO |
H12 |
1.080 |
1.080 |
CAQ |
H13 |
1.080 |
1.080 |
CAR |
H14 |
1.080 |
1.080 |
CAS |
H15 |
1.080 |
1.080 |
CAS |
H16 |
1.080 |
1.080 |
CAT |
H18 |
1.080 |
1.080 |
CAU |
H20 |
1.100 |
1.090 |
CAU |
H21 |
1.100 |
1.091 |
CAV |
H22 |
1.100 |
1.090 |
CAV |
H23 |
1.101 |
1.090 |
CAW |
H24 |
1.100 |
1.090 |
CAW |
H25 |
1.100 |
1.089 |
CAX |
H26 |
1.100 |
1.090 |
CAX |
H27 |
1.100 |
1.090 |
NBB |
H28 |
1.000 |
0.970 |
NBC |
H29 |
1.000 |
0.970 |
NBD |
H30 |
1.000 |
0.970 |
Bond Angles for 8JC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C6 |
N1 |
118.8 |
119.3 |
C5 |
C6 |
H1 |
120.6 |
120.3 |
C5 |
C4 |
N3 |
121.0 |
119.0 |
C6 |
N1 |
C2 |
120.5 |
120.9 |
N1 |
C6 |
H1 |
120.6 |
120.4 |
C4 |
N3 |
C2 |
120.5 |
120.6 |
CBJ |
CAM |
H10 |
119.9 |
120.0 |
CBJ |
CAQ |
H13 |
120.2 |
120.0 |
CAM |
CAK |
H8 |
120.1 |
119.9 |
N1 |
C2 |
N3 |
121.2 |
121.7 |
N1 |
C2 |
NBD |
117.4 |
119.1 |
CAQ |
CBI |
NBB |
123.9 |
120.0 |
CBI |
CAQ |
H13 |
120.3 |
120.1 |
N3 |
C2 |
NBD |
121.5 |
119.2 |
CAL |
CAK |
H8 |
120.2 |
119.9 |
CAK |
CAL |
H9 |
119.6 |
120.0 |
C2 |
NBD |
CBM |
120.4 |
120.0 |
C2 |
NBD |
H30 |
119.8 |
120.0 |
CBI |
CAL |
H9 |
119.6 |
120.0 |
CBH |
NBB |
CBI |
121.9 |
120.0 |
CBI |
NBB |
H28 |
119.0 |
120.0 |
CBH |
NBB |
H28 |
119.1 |
120.0 |
CBH |
CAT |
H18 |
124.1 |
120.0 |
CAT |
CAS |
H15 |
120.0 |
120.0 |
CAT |
CAS |
H16 |
120.0 |
120.0 |
CAS |
CAT |
H18 |
124.1 |
120.0 |
CAO |
CBM |
CBN |
120.9 |
120.0 |
CBM |
CAO |
H12 |
120.8 |
120.0 |
CAO |
CAN |
CBK |
120.6 |
120.1 |
CAO |
CAN |
H11 |
119.7 |
120.0 |
CBM |
CBN |
OBE |
116.3 |
120.1 |
CAN |
CBK |
CAR |
120.6 |
120.0 |
CAN |
CBK |
NBS |
120.6 |
120.0 |
CBK |
CAN |
H11 |
119.7 |
120.0 |
CBN |
CAR |
H14 |
120.8 |
120.0 |
OBE |
CAA |
H2 |
109.5 |
109.5 |
OBE |
CAA |
H3 |
109.5 |
109.4 |
OBE |
CAA |
H4 |
109.4 |
109.4 |
CBK |
CAR |
H14 |
120.7 |
120.0 |
CAW |
NBS |
CBK |
120.4 |
111.0 |
CAW |
NBS |
CAX |
120.2 |
111.3 |
NBS |
CAW |
H24 |
109.1 |
109.5 |
NBS |
CAW |
H25 |
109.1 |
109.5 |
CAW |
CAU |
NBR |
111.3 |
108.5 |
CAW |
CAU |
H20 |
109.0 |
109.6 |
CAW |
CAU |
H21 |
109.0 |
109.7 |
NBS |
CAX |
H26 |
109.0 |
109.5 |
NBS |
CAX |
H27 |
109.0 |
109.5 |
CAU |
NBR |
CAV |
119.9 |
118.3 |
CAU |
NBR |
CBG |
119.9 |
120.8 |
NBR |
CAU |
H20 |
109.0 |
109.7 |
NBR |
CAU |
H21 |
109.0 |
109.6 |
CAX |
CAV |
H22 |
109.1 |
109.6 |
CAX |
CAV |
H23 |
109.1 |
109.7 |
NBR |
CAV |
H22 |
109.1 |
109.6 |
NBR |
CAV |
H23 |
109.1 |
109.8 |
CBG |
CAB |
H5 |
109.5 |
109.4 |
CBG |
CAB |
H6 |
109.5 |
109.4 |
CBG |
CAB |
H7 |
109.5 |
109.5 |
H2 |
CAA |
H3 |
109.5 |
109.5 |
H2 |
CAA |
H4 |
109.5 |
109.5 |
H3 |
CAA |
H4 |
109.5 |
109.5 |
H5 |
CAB |
H6 |
109.5 |
109.5 |
H5 |
CAB |
H7 |
109.5 |
109.5 |
H6 |
CAB |
H7 |
109.4 |
109.5 |
H15 |
CAS |
H16 |
120.0 |
120.0 |
H20 |
CAU |
H21 |
109.5 |
109.6 |
H22 |
CAV |
H23 |
109.4 |
109.6 |
H24 |
CAW |
H25 |
109.5 |
109.5 |
H26 |
CAX |
H27 |
109.5 |
109.5 |
Torsion Angles for 8JC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CBT |
C5 |
C6 |
H1 |
0.3 |
359.9 |
C6 |
C5 |
C4 |
N3 |
360.0 |
359.9 |
C5 |
C6 |
N1 |
C2 |
359.9 |
360.0 |
N1 |
C6 |
C5 |
H1 |
180.0 |
180.1 |
C5 |
C4 |
N3 |
C2 |
360.0 |
0.1 |
C5 |
C6 |
N1 |
H1 |
180.0 |
179.9 |
C6 |
N1 |
C2 |
N3 |
0.0 |
0.0 |
C6 |
N1 |
C2 |
NBD |
180.2 |
180.0 |
NBC |
CBJ |
CAM |
H10 |
359.7 |
0.0 |
NBC |
CBJ |
CAQ |
H13 |
0.3 |
359.8 |
N1 |
C2 |
N3 |
C4 |
0.0 |
360.0 |
C4 |
N3 |
C2 |
NBD |
179.9 |
180.0 |
CBJ |
CAM |
CAK |
H8 |
179.8 |
180.3 |
CAQ |
CBJ |
CAM |
H10 |
180.1 |
179.5 |
CBJ |
CAQ |
CBI |
NBB |
179.7 |
180.0 |
CBI |
CAQ |
CBJ |
H13 |
180.0 |
180.4 |
CAL |
CAK |
CAM |
H8 |
180.0 |
179.8 |
CAM |
CAK |
CAL |
H9 |
180.2 |
180.2 |
C2 |
N1 |
C6 |
H1 |
179.9 |
180.0 |
C4 |
N3 |
C2 |
N1 |
0.0 |
360.0 |
N3 |
C2 |
N1 |
NBD |
179.8 |
180.1 |
N1 |
C2 |
NBD |
CBM |
192.6 |
5.5 |
N1 |
C2 |
NBD |
H30 |
12.5 |
185.4 |
CBJ |
CAQ |
CBI |
H13 |
180.0 |
179.6 |
CAQ |
CBI |
CAL |
H9 |
179.8 |
180.0 |
CBH |
NBB |
CBI |
CAQ |
11.4 |
34.5 |
CAQ |
CBI |
NBB |
H28 |
191.4 |
214.4 |
OAF |
CBH |
NBB |
H28 |
180.5 |
184.9 |
OAF |
CBH |
CAT |
H18 |
158.0 |
180.1 |
N1 |
C2 |
N3 |
NBD |
180.2 |
179.9 |
N3 |
C2 |
NBD |
CBM |
12.7 |
185.4 |
N3 |
C2 |
NBD |
H30 |
192.7 |
5.3 |
CAM |
CAK |
CAL |
H8 |
180.0 |
180.2 |
CBI |
CAL |
CAK |
H9 |
180.0 |
180.0 |
N1 |
C2 |
NBD |
N3 |
179.8 |
180.1 |
CBI |
CAL |
CAK |
H8 |
180.2 |
180.0 |
CAK |
CAL |
CBI |
H9 |
180.0 |
180.0 |
NBB |
CBI |
CAQ |
H13 |
359.7 |
0.4 |
NBB |
CBI |
CAL |
H9 |
0.2 |
359.6 |
CBH |
NBB |
CBI |
H28 |
180.0 |
180.1 |
CAQ |
CBI |
NBB |
CBH |
11.4 |
34.5 |
CBI |
NBB |
CBH |
H28 |
180.0 |
179.9 |
NBB |
CBH |
CAT |
H18 |
338.9 |
360.0 |
CBH |
CAT |
CAS |
H15 |
360.0 |
180.0 |
CBH |
CAT |
CAS |
H16 |
180.0 |
359.9 |
CAS |
CAT |
CBH |
H18 |
180.0 |
180.0 |
CBH |
CAT |
CAS |
H18 |
180.0 |
180.0 |
H15 |
CAS |
CAT |
H16 |
180.0 |
180.1 |
C2 |
NBD |
CBM |
H30 |
180.0 |
179.9 |
NBD |
CBM |
CAO |
H12 |
0.8 |
0.1 |
NBD |
CBM |
CBN |
OBE |
359.2 |
360.0 |
C2 |
NBD |
CBM |
CAO |
332.9 |
28.4 |
CBM |
CAO |
CAN |
CBK |
0.1 |
0.1 |
CBM |
CAO |
CAN |
H11 |
180.1 |
179.7 |
CAO |
CBM |
CBN |
OBE |
180.4 |
180.0 |
CAO |
CAN |
CBK |
CAR |
0.2 |
359.7 |
CAO |
CAN |
CBK |
NBS |
180.0 |
179.7 |
CBK |
CAN |
CAO |
H11 |
180.0 |
180.3 |
C2 |
NBD |
CBM |
CBN |
154.2 |
208.5 |
CBN |
CBM |
CAO |
H12 |
179.5 |
180.0 |
CBM |
CBN |
CAR |
H14 |
179.7 |
180.0 |
CAO |
CAN |
CBK |
H11 |
180.0 |
179.7 |
CAN |
CBK |
CAR |
H14 |
179.9 |
180.0 |
CAW |
NBS |
CBK |
CAN |
7.3 |
360.0 |
OBE |
CBN |
CAR |
H14 |
359.9 |
0.4 |
CBN |
OBE |
CAA |
H2 |
180.0 |
300.1 |
CBN |
OBE |
CAA |
H3 |
300.0 |
60.0 |
CBN |
OBE |
CAA |
H4 |
60.0 |
180.0 |
CAO |
CBM |
CBN |
CAR |
0.6 |
0.4 |
CBK |
CAR |
CBN |
H14 |
180.0 |
179.4 |
H2 |
CAA |
OBE |
H3 |
240.0 |
240.0 |
H2 |
CAA |
OBE |
H4 |
120.0 |
120.0 |
H3 |
CAA |
OBE |
H4 |
240.0 |
240.0 |
CAN |
CBK |
CAR |
NBS |
179.8 |
180.0 |
CAR |
CBK |
CAN |
H11 |
180.2 |
180.0 |
CBN |
CAR |
CBK |
H14 |
180.0 |
180.6 |
CAN |
CBK |
NBS |
CAR |
180.2 |
180.0 |
NBS |
CBK |
CAN |
H11 |
0.1 |
0.1 |
NBS |
CBK |
CAR |
H14 |
0.0 |
359.9 |
CAW |
NBS |
CBK |
CAX |
179.6 |
124.3 |
CBK |
NBS |
CAW |
H24 |
299.9 |
52.8 |
CBK |
NBS |
CAW |
H25 |
59.5 |
292.7 |
CBK |
NBS |
CAX |
H26 |
346.9 |
67.3 |
CBK |
NBS |
CAX |
H27 |
106.4 |
307.3 |
CAN |
CBK |
NBS |
CAW |
7.3 |
360.0 |
NBS |
CAW |
CAU |
NBR |
315.2 |
53.8 |
NBS |
CAW |
CAU |
H20 |
75.5 |
173.6 |
NBS |
CAW |
CAU |
H21 |
194.9 |
294.0 |
CAW |
NBS |
CAX |
H26 |
167.3 |
303.1 |
CAW |
NBS |
CAX |
H27 |
286.8 |
183.1 |
H24 |
CAW |
NBS |
H25 |
240.4 |
120.1 |
CAW |
CAU |
NBR |
CAV |
47.0 |
308.8 |
CAW |
CAU |
NBR |
CBG |
226.8 |
128.8 |
NBR |
CAU |
CAW |
H20 |
239.7 |
240.2 |
NBR |
CAU |
CAW |
H21 |
120.3 |
119.8 |
H20 |
CAU |
CAW |
H21 |
240.6 |
239.6 |
CAN |
CBK |
NBS |
CAX |
187.7 |
235.7 |
CAW |
NBS |
CAX |
CBK |
180.4 |
235.8 |
CAX |
NBS |
CAW |
H24 |
119.5 |
177.0 |
CAX |
NBS |
CAW |
H25 |
239.1 |
56.9 |
NBS |
CAX |
CAV |
H22 |
75.5 |
65.9 |
NBS |
CAX |
CAV |
H23 |
195.0 |
186.3 |
H26 |
CAX |
NBS |
H27 |
240.5 |
120.1 |
CAW |
CAU |
NBR |
H20 |
120.3 |
119.7 |
CAW |
CAU |
NBR |
H21 |
239.7 |
240.1 |
CAU |
NBR |
CAV |
H22 |
239.1 |
291.4 |
CAU |
NBR |
CAV |
H23 |
119.6 |
171.0 |
H20 |
CAU |
NBR |
H21 |
119.5 |
120.4 |
CAU |
NBR |
CAV |
CAX |
359.4 |
51.2 |
NBR |
CAV |
CAX |
H22 |
239.8 |
240.3 |
NBR |
CAV |
CAX |
H23 |
120.2 |
119.9 |
H22 |
CAV |
CAX |
H23 |
240.5 |
239.6 |
CAU |
NBR |
CAV |
CBG |
179.8 |
179.9 |
CAV |
NBR |
CAU |
H20 |
286.7 |
189.1 |
CAV |
NBR |
CAU |
H21 |
167.3 |
68.7 |
CAX |
CAV |
NBR |
H22 |
120.2 |
119.7 |
CAX |
CAV |
NBR |
H23 |
239.8 |
240.2 |
H22 |
CAV |
NBR |
H23 |
119.5 |
120.4 |
CAU |
NBR |
CBG |
CAV |
180.2 |
180.1 |
CBG |
NBR |
CAU |
H20 |
106.6 |
9.0 |
CBG |
NBR |
CAU |
H21 |
347.1 |
248.6 |
CBG |
NBR |
CAV |
H22 |
59.3 |
111.5 |
CBG |
NBR |
CAV |
H23 |
299.8 |
351.1 |
NBR |
CBG |
CAB |
H5 |
180.0 |
60.0 |
NBR |
CBG |
CAB |
H6 |
300.0 |
180.0 |
NBR |
CBG |
CAB |
H7 |
60.0 |
300.0 |
OAE |
CBG |
CAB |
H5 |
360.0 |
240.0 |
OAE |
CBG |
CAB |
H6 |
120.0 |
359.9 |
OAE |
CBG |
CAB |
H7 |
240.0 |
120.0 |
H5 |
CAB |
CBG |
H6 |
240.0 |
240.0 |
H5 |
CAB |
CBG |
H7 |
120.0 |
120.0 |
H6 |
CAB |
CBG |
H7 |
240.0 |
240.0 |
C5 |
C6 |
H1 |
N1 |
180.0 |
180.1 |
H1 |
C6 |
N1 |
C2 |
179.9 |
180.0 |
OBE |
CAA |
H2 |
H3 |
120.0 |
120.0 |
OBE |
CAA |
H2 |
H4 |
240.0 |
240.0 |
H3 |
CAA |
H2 |
H4 |
120.0 |
120.1 |
OBE |
CAA |
H3 |
H2 |
240.0 |
240.0 |
OBE |
CAA |
H3 |
H4 |
120.0 |
119.9 |
H2 |
CAA |
H3 |
H4 |
240.0 |
239.9 |
OBE |
CAA |
H4 |
H2 |
120.0 |
120.0 |
OBE |
CAA |
H4 |
H3 |
240.0 |
240.0 |
H2 |
CAA |
H4 |
H3 |
120.0 |
120.1 |
CBG |
CAB |
H5 |
H6 |
120.0 |
119.9 |
CBG |
CAB |
H5 |
H7 |
240.0 |
240.0 |
H6 |
CAB |
H5 |
H7 |
120.0 |
120.1 |
CBG |
CAB |
H6 |
H5 |
239.9 |
240.1 |
CBG |
CAB |
H6 |
H7 |
120.0 |
120.0 |
H5 |
CAB |
H6 |
H7 |
240.0 |
240.0 |
CBG |
CAB |
H7 |
H5 |
120.0 |
120.0 |
CBG |
CAB |
H7 |
H6 |
240.0 |
240.0 |
H5 |
CAB |
H7 |
H6 |
120.0 |
120.0 |
H8 |
CAK |
CAL |
H9 |
0.2 |
360.0 |
H9 |
CAL |
CAK |
H8 |
0.2 |
360.0 |
H10 |
CAM |
CAK |
H8 |
359.9 |
0.3 |
CAO |
CAN |
H11 |
CBK |
180.0 |
180.3 |
H11 |
CAN |
CBK |
CAR |
180.2 |
180.0 |
H11 |
CAN |
CBK |
NBS |
0.1 |
0.1 |
H12 |
CAO |
CBM |
CBN |
179.5 |
180.0 |
H12 |
CAO |
CAN |
CBK |
180.1 |
180.0 |
H12 |
CAO |
CAN |
H11 |
0.1 |
359.6 |
H13 |
CAQ |
CBI |
NBB |
359.7 |
0.4 |
CAT |
CAS |
H15 |
H16 |
180.0 |
179.9 |
H15 |
CAS |
CAT |
H18 |
180.0 |
0.1 |
CAT |
CAS |
H16 |
H15 |
180.0 |
180.1 |
H16 |
CAS |
CAT |
H18 |
360.0 |
179.9 |
H18 |
CAT |
CAS |
H15 |
180.0 |
0.1 |
H18 |
CAT |
CAS |
H16 |
360.0 |
179.9 |
CAW |
CAU |
H20 |
NBR |
238.3 |
240.9 |
CAW |
CAU |
H20 |
H21 |
119.1 |
120.5 |
H20 |
CAU |
NBR |
CAV |
286.7 |
189.1 |
H20 |
CAU |
NBR |
CBG |
106.6 |
9.0 |
NBR |
CAU |
H20 |
H21 |
240.8 |
239.6 |
CAW |
CAU |
H21 |
NBR |
121.7 |
119.1 |
CAW |
CAU |
H21 |
H20 |
240.8 |
239.6 |
H21 |
CAU |
NBR |
CAV |
167.3 |
68.7 |
H21 |
CAU |
NBR |
CBG |
347.1 |
248.6 |
NBR |
CAU |
H21 |
H20 |
119.2 |
120.5 |
CAX |
CAV |
H22 |
H23 |
119.3 |
120.4 |
NBR |
CAV |
H22 |
H23 |
240.7 |
239.5 |
CAX |
CAV |
H23 |
H22 |
240.7 |
239.6 |
NBR |
CAV |
H23 |
H22 |
119.3 |
120.5 |
H24 |
CAW |
NBS |
CBK |
299.9 |
52.8 |
H24 |
CAW |
NBS |
CAX |
119.5 |
177.0 |
NBS |
CAW |
H24 |
H25 |
119.4 |
240.0 |
H24 |
CAW |
CAU |
NBR |
195.0 |
173.8 |
H24 |
CAW |
CAU |
H20 |
315.3 |
293.5 |
H24 |
CAW |
CAU |
H21 |
74.7 |
54.0 |
H25 |
CAW |
NBS |
CBK |
59.5 |
292.7 |
H25 |
CAW |
NBS |
CAX |
239.1 |
56.9 |
NBS |
CAW |
H25 |
H24 |
240.6 |
120.1 |
H25 |
CAW |
CAU |
NBR |
75.4 |
293.9 |
H25 |
CAW |
CAU |
H20 |
195.7 |
53.7 |
H25 |
CAW |
CAU |
H21 |
315.1 |
174.1 |
NBS |
CAX |
H26 |
H27 |
119.2 |
239.9 |
H26 |
CAX |
CAV |
H22 |
315.2 |
185.8 |
H26 |
CAX |
CAV |
H23 |
74.7 |
306.2 |
NBS |
CAX |
H27 |
H26 |
240.8 |
120.0 |
H27 |
CAX |
CAV |
H22 |
195.7 |
305.9 |
H27 |
CAX |
CAV |
H23 |
315.2 |
66.3 |
CBH |
NBB |
H28 |
CBI |
180.0 |
179.9 |
C2 |
NBD |
H30 |
CBM |
180.0 |
180.1 |