PDB Chemical Component 8J6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8J6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C20	C18	1.534	1.532
C23	C17	1.526	1.530
C18	N2	1.504	1.451
C18	C19	1.536	1.527
C18	C21	1.543	1.547
C15	C19	1.496	1.528
C15	N1	1.515	1.469
C15	C16	1.490	1.528
N2	C17	1.503	1.452
N1	C13	1.483	1.385
C17	C16	1.525	1.528
C17	C22	1.528	1.545
C1	C2	1.397	1.379
C1	C	1.392	1.384
C2	C3	1.394	1.394
C	C5	1.391	1.383
N	C13	1.352	1.297
N	C12	1.373	1.333
C13	S	1.699	1.761
C3	C4	1.389	1.393
C3	C6	1.554	1.484
C5	C4	1.397	1.381
C11	C6	1.401	1.391
C11	C10	1.401	1.392
C6	C7	1.392	1.394
C12	C10	1.564	1.483
C12	C14	1.410	1.344
C10	C9	1.393	1.395
C7	C8	1.398	1.381
S	C14	1.712	1.762
C9	C8	1.402	1.381
C23	H1	1.101	1.090
C23	H2	1.100	1.090
C23	H3	1.100	1.091
C16	H4	1.100	1.092
C16	H5	1.100	1.091
C22	H6	1.100	1.090
C22	H7	1.100	1.090
C22	H8	1.100	1.090
N2	H9	1.000	1.008
C20	H11	1.100	1.090
C20	H12	1.100	1.090
C20	H13	1.100	1.090
C21	H14	1.100	1.090
C21	H15	1.100	1.090
C21	H16	1.100	1.090
C19	H17	1.100	1.092
C19	H18	1.100	1.092
C15	H19	1.099	1.088
N1	H20	1.000	0.970
C14	H21	1.080	1.079
C9	H22	1.080	1.080
C8	H23	1.080	1.080
C7	H24	1.080	1.080
C11	H25	1.080	1.080
C2	H26	1.080	1.080
C1	H27	1.080	1.081
C4	H28	1.080	1.080
C5	H29	1.080	1.080
C	H30	1.080	1.079

Bond Angles for 8J6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C20	C18	C19	108.4	109.8
C20	C18	C21	107.1	107.2
C23	C17	C16	108.4	110.0
C23	C17	C22	108.1	107.3
C17	C23	H1	109.5	109.4
C17	C23	H2	109.5	109.5
C17	C23	H3	109.5	109.4
C18	N2	H9	106.9	112.4
C21	C18	C19	107.2	107.4
C18	C19	H17	108.2	109.4
C18	C19	H18	108.2	109.4
C18	C21	H14	109.5	109.5
C18	C21	H15	109.4	109.4
C18	C21	H16	109.5	109.4
C15	C19	H17	108.2	109.3
C15	C19	H18	108.3	109.4
C15	N1	C13	126.4	120.0
N1	C15	H19	107.7	108.9
C15	N1	H20	105.1	120.0
C15	C16	H4	109.6	109.5
C15	C16	H5	109.6	109.5
N1	C13	S	129.3	125.3
C13	N1	H20	105.1	120.0
C16	C17	C22	108.8	107.4
C17	C16	H4	109.7	109.3
C17	C16	H5	109.7	109.4
C17	C22	H6	109.5	109.5
C17	C22	H7	109.5	109.5
C17	C22	H8	109.5	109.4
C1	C2	H26	120.0	120.1
C1	C	C5	119.8	120.2
C	C1	H27	120.0	119.9
C1	C	H30	120.1	119.9
C2	C3	C4	119.9	119.7
C	C5	H29	119.9	119.9
N	C13	S	105.9	109.5
N	C12	C10	121.8	122.3
N	C12	C14	115.4	115.3
C13	S	C14	98.4	90.1
C3	C4	H28	120.0	120.1
C5	C4	H28	120.0	120.0
C6	C11	H25	120.1	120.2
C6	C7	H24	120.1	119.9
C12	C10	C9	120.4	120.0
C12	C14	H21	128.1	125.9
C10	C9	C8	120.1	120.1
C10	C9	H22	119.9	120.0
C7	C8	H23	120.0	119.8
S	C14	H21	128.1	125.9
C8	C9	H22	120.0	119.9
C9	C8	H23	120.0	119.9
H1	C23	H2	109.5	109.6
H1	C23	H3	109.5	109.5
H2	C23	H3	109.4	109.4
H4	C16	H5	109.5	109.0
H6	C22	H7	109.5	109.4
H6	C22	H8	109.5	109.5
H7	C22	H8	109.4	109.5
H11	C20	H12	109.5	109.5
H11	C20	H13	109.5	109.5
H12	C20	H13	109.4	109.5
H14	C21	H15	109.5	109.5
H14	C21	H16	109.5	109.5
H15	C21	H16	109.5	109.5
H17	C19	H18	109.5	108.7

Torsion Angles for 8J6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C20	C18	N2	H9	349.0	54.0
C21	C18	C20	C19	244.7	243.7
C20	C18	C19	H17	235.5	196.0
C20	C18	C19	H18	354.1	315.0
C20	C18	C21	H14	180.0	299.6
C20	C18	C21	H15	300.0	59.7
C20	C18	C21	H16	60.0	179.6
C16	C17	C23	C22	242.2	243.4
C23	C17	C16	H4	168.8	47.3
C23	C17	C16	H5	48.6	166.6
C23	C17	C22	H6	180.0	60.0
C23	C17	C22	H7	300.0	179.9
C23	C17	C22	H8	60.0	300.0
H1	C23	C17	H2	240.0	239.9
H1	C23	C17	H3	120.0	120.0
H2	C23	C17	H3	240.0	240.1
C20	C18	C19	C21	244.7	243.8
C19	C18	N2	H9	112.5	178.1
C19	C18	C21	H14	63.8	181.7
C19	C18	C21	H15	183.8	301.8
C19	C18	C21	H16	303.8	61.7
C15	C19	C18	H17	239.3	239.5
C15	C19	C18	H18	120.7	120.6
H17	C19	C18	H18	241.4	241.0
C20	C18	C21	C19	116.2	117.9
C21	C18	N2	H9	233.7	296.5
C21	C18	C19	H17	350.8	312.2
C21	C18	C19	H18	109.4	71.2
H14	C21	C18	H15	240.0	240.0
H14	C21	C18	H16	120.0	120.0
H15	C21	C18	H16	240.0	240.1
C18	C19	C15	H17	120.7	120.5
C18	C19	C15	H18	239.3	239.4
C19	C15	C16	H4	50.4	179.5
C19	C15	C16	H5	170.6	60.1
H17	C19	C15	H18	118.6	118.9
N1	C15	C19	H17	50.1	57.6
N1	C15	C19	H18	291.5	298.7
N1	C15	C16	H4	285.7	60.4
N1	C15	C16	H5	45.9	301.0
C15	N1	C13	S	337.2	360.0
C13	N1	C15	H20	237.8	180.0
C17	C16	C15	H4	240.1	120.2
C17	C16	C15	H5	119.9	239.7
H4	C16	C15	H5	239.8	119.4
N2	C17	C23	H1	180.0	294.8
N2	C17	C23	H2	300.0	54.9
N2	C17	C23	H3	60.0	174.8
N2	C17	C16	H4	291.0	172.3
N2	C17	C16	H5	170.7	291.7
N2	C17	C22	H6	61.4	299.3
N2	C17	C22	H7	181.4	59.2
N2	C17	C22	H8	301.4	179.2
C13	N1	C15	H19	204.1	34.4
C15	N1	C13	H20	122.2	180.0
N	C13	N1	S	180.6	180.3
N1	C13	S	C14	180.3	180.0
C23	C17	C16	C22	117.3	116.5
C16	C17	C23	H1	304.5	59.9
C16	C17	C23	H2	64.5	180.0
C16	C17	C23	H3	184.5	299.9
C15	C16	C17	H4	119.9	239.7
C15	C16	C17	H5	240.1	120.4
C16	C17	C22	H6	297.6	178.3
C16	C17	C22	H7	57.6	298.2
C16	C17	C22	H8	177.5	58.2
H4	C16	C17	H5	120.2	240.7
C23	C17	C22	C16	242.4	241.7
C22	C17	C23	H1	62.3	176.5
C22	C17	C23	H2	182.3	296.6
C22	C17	C23	H3	302.3	56.5
C22	C17	C16	H4	51.5	290.8
C22	C17	C16	H5	291.3	50.1
H6	C22	C17	H7	240.0	240.0
H6	C22	C17	H8	120.0	120.0
H7	C22	C17	H8	240.1	240.0
C1	C2	C3	C4	0.2	0.0
C	C1	C2	H26	179.9	180.1
C1	C	C5	H29	179.9	180.0
C2	C3	C4	H28	179.8	179.6
C5	C	C1	H27	180.1	180.3
C1	C	C5	H30	180.0	179.7
C	C5	C4	H28	180.1	180.6
N1	C13	N	S	179.5	179.7
N	C13	N1	H20	35.6	0.2
N	C13	S	C14	359.8	359.8
C12	N	C13	S	0.0	0.2
N	C12	C10	C9	218.4	185.1
N	C12	C14	H21	179.7	180.1
S	C13	N1	H20	215.0	179.9
C13	S	C14	H21	180.3	180.0
C5	C4	C3	H28	180.0	180.1
C3	C6	C11	H25	0.0	359.5
C3	C6	C7	H24	0.1	0.3
C1	C	C5	C4	360.0	359.5
C3	C4	C5	H28	180.0	179.9
C11	C6	C7	H24	180.2	179.7
C11	C10	C9	H22	180.3	180.2
C6	C7	C8	H23	179.9	180.1
N	C12	C10	C14	180.4	180.0
C10	C12	C14	H21	0.1	0.1
C12	C10	C9	C8	179.8	180.0
C12	C10	C9	H22	359.8	359.9
N	C12	C14	C10	179.6	180.0
S	C14	C12	H21	180.0	179.8
C8	C9	C10	H22	180.0	180.1
C10	C9	C8	H23	179.9	179.9
C7	C8	C9	H22	179.8	180.1
C9	C8	C7	H23	180.0	179.9
N	C12	C14	S	359.7	359.9
C12	C14	S	H21	180.0	180.2
C10	C9	C8	H22	180.0	179.9
C7	C8	C9	H23	180.0	180.1
H1	C23	C17	C16	304.5	59.9
H1	C23	C17	C22	62.3	176.5
C17	C23	H1	H2	120.0	120.0
C17	C23	H1	H3	240.0	240.0
H2	C23	H1	H3	120.0	120.0
H2	C23	C17	C16	64.5	180.0
H2	C23	C17	C22	182.3	296.6
C17	C23	H2	H1	240.0	240.0
C17	C23	H2	H3	120.0	119.9
H1	C23	H2	H3	240.0	239.9
H3	C23	C17	C16	184.5	299.9
H3	C23	C17	C22	302.3	56.5
C17	C23	H3	H1	120.0	120.0
C17	C23	H3	H2	240.0	240.1
H1	C23	H3	H2	120.0	120.1
C15	C16	H4	H5	120.3	240.3
H4	C16	C17	C22	51.5	290.8
C17	C16	H4	H5	239.6	119.6
C15	C16	H5	H4	239.7	119.7
H5	C16	C17	C22	291.3	50.1
C17	C16	H5	H4	120.4	240.5
C17	C22	H6	H7	120.0	120.0
C17	C22	H6	H8	240.0	240.0
H7	C22	H6	H8	119.9	120.0
C17	C22	H7	H6	239.9	240.0
C17	C22	H7	H8	120.0	120.0
H6	C22	H7	H8	240.1	240.0
C17	C22	H8	H6	120.1	120.0
C17	C22	H8	H7	240.0	240.0
H6	C22	H8	H7	119.9	120.0
H11	C20	C18	C19	50.8	294.3
H11	C20	C18	C21	295.5	178.0
H12	C20	H11	H13	120.0	120.1
H12	C20	C18	C19	170.9	54.3
H12	C20	C18	C21	55.5	298.0
H11	C20	H12	H13	240.0	239.9
H13	C20	C18	C19	290.8	174.3
H13	C20	C18	C21	175.5	58.0
H11	C20	H13	H12	120.0	120.1
H14	C21	C18	C19	63.8	181.7
C18	C21	H14	H15	120.0	120.0
C18	C21	H14	H16	240.0	240.0
H15	C21	H14	H16	120.0	120.0
H15	C21	C18	C19	183.8	301.8
C18	C21	H15	H14	240.0	240.0
C18	C21	H15	H16	120.0	119.9
H14	C21	H15	H16	240.0	239.9
H16	C21	C18	C19	303.8	61.7
C18	C21	H16	H14	120.0	120.0
C18	C21	H16	H15	240.0	240.1
H14	C21	H16	H15	120.0	120.1
C18	C19	H17	H18	117.8	119.4
C15	C19	H17	H18	242.2	240.7
C18	C19	H18	H17	242.2	240.6
C15	C19	H18	H17	117.8	119.3
H19	C15	C19	H17	168.9	177.3
H19	C15	C19	H18	50.3	58.3
H19	C15	N1	C13	204.1	34.4
H19	C15	N1	H20	326.3	214.4
H19	C15	C16	H4	168.3	300.7
H19	C15	C16	H5	288.5	181.3
C15	N1	H20	C13	224.8	180.0
H20	N1	C15	H19	326.3	214.4
H20	N1	C13	S	215.0	179.9
C10	C9	H22	C8	180.0	180.1
H22	C9	C8	H23	359.8	0.0
H23	C8	C9	H22	359.8	0.0
H24	C7	C8	H23	359.9	0.1
H26	C2	C3	C4	180.2	179.9
H27	C1	C2	H26	359.9	0.1
H27	C1	C	C5	180.1	180.3
H27	C1	C	H30	0.0	360.0
H29	C5	C4	H28	0.1	0.1
C1	C	H30	C5	180.0	180.3
H30	C	C1	H27	0.0	360.0
H30	C	C5	H29	360.0	0.3