PDB Chemical Component 8J4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8J4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C04	C03	1.396	1.362
C04	C05	1.391	1.411
C03	C02	1.395	1.403
C06	C05	1.396	1.403
C06	C07	1.400	1.362
C05	C10	1.394	1.416
C02	N02	1.363	1.386
C02	N01	1.345	1.317
C07	C08	1.399	1.393
C10	N01	1.351	1.338
C10	C09	1.389	1.405
C08	C09	1.386	1.361
C08	C11	1.507	1.508
O12	C11	1.417	1.429
O12	C21	1.364	1.359
C21	C22	1.390	1.387
C21	C26	1.386	1.388
C22	C23	1.389	1.381
C26	C25	1.386	1.381
C23	C29	1.511	1.507
C23	C24	1.388	1.383
C25	C24	1.391	1.383
C25	C27	1.505	1.506
C29	N30	1.473	1.470
C27	C28	1.509	1.530
N30	C31	1.473	1.469
C11	H1	1.100	1.090
C11	H2	1.100	1.089
N02	H3	1.000	0.970
N02	H4	1.000	0.970
C03	H5	1.080	1.080
C04	H6	1.080	1.080
C06	H7	1.080	1.079
C07	H8	1.080	1.080
C09	H9	1.080	1.081
C26	H10	1.080	1.081
C22	H11	1.080	1.081
C29	H12	1.100	1.089
C29	H13	1.100	1.090
N30	H14	1.000	1.009
C31	H16	1.100	1.090
C31	H17	1.100	1.090
C31	H18	1.100	1.090
C24	H19	1.080	1.079
C27	H20	1.100	1.090
C27	H21	1.100	1.090
C28	H22	1.100	1.090
C28	H23	1.100	1.091
C28	H24	1.100	1.089

Bond Angles for 8J4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C04	C03	H5	119.8	120.1
C05	C04	H6	120.6	120.8
C06	C07	C08	120.1	120.8
C07	C06	H7	120.1	120.2
C06	C07	H8	119.9	119.6
C05	C10	C09	120.6	119.1
C02	N02	H3	109.5	120.0
C02	N02	H4	109.4	120.0
C10	N01	C02	121.8	121.3
C07	C08	C09	119.8	121.0
C08	C07	H8	120.0	119.6
N01	C10	C09	118.5	121.0
C10	C09	C08	120.1	119.8
C10	C09	H9	119.9	120.1
C08	C09	H9	119.9	120.1
C08	C11	H1	108.5	109.4
C08	C11	H2	108.5	109.5
O12	C11	H1	108.5	109.5
O12	C11	H2	108.5	109.5
O12	C21	C22	119.0	120.1
O12	C21	C26	120.4	120.1
C26	C21	C22	120.6	119.8
C21	C22	C23	120.0	120.0
C21	C22	H11	120.0	120.0
C21	C26	C25	119.1	120.0
C21	C26	H10	120.4	120.0
C22	C23	C29	120.2	120.0
C22	C23	C24	119.6	120.1
C23	C22	H11	120.0	120.0
C26	C25	C24	120.7	120.0
C26	C25	C27	119.4	120.0
C25	C26	H10	120.4	120.0
C29	C23	C24	120.1	119.9
C23	C29	N30	108.1	109.5
C23	C29	H12	109.8	109.5
C23	C29	H13	109.8	109.5
C23	C24	H19	120.0	119.9
C25	C24	H19	120.1	120.0
C25	C27	C28	109.9	109.5
C25	C27	H20	109.4	109.5
C25	C27	H21	109.4	109.5
C29	N30	C31	110.0	111.0
N30	C29	H12	109.8	109.5
N30	C29	H13	109.8	109.4
C29	N30	H14	109.3	111.0
C28	C27	H20	109.4	109.5
C28	C27	H21	109.4	109.5
C27	C28	H22	109.5	109.5
C27	C28	H23	109.5	109.5
C27	C28	H24	109.5	109.5
C31	N30	H14	109.3	111.0
N30	C31	H16	109.5	109.4
N30	C31	H17	109.5	109.5
N30	C31	H18	109.5	109.5
H1	C11	H2	109.5	109.5
H3	N02	H4	109.5	120.0
H12	C29	H13	109.5	109.5
H16	C31	H17	109.4	109.5
H16	C31	H18	109.5	109.5
H17	C31	H18	109.5	109.5
H20	C27	H21	109.4	109.4
H22	C28	H23	109.4	109.4
H22	C28	H24	109.5	109.5
H23	C28	H24	109.5	109.5

Torsion Angles for 8J4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C05	C04	C03	H5	179.0	180.3
C04	C05	C10	C09	180.2	180.3
C03	C02	N02	H3	180.7	179.9
C03	C02	N02	H4	300.7	0.0
C06	C05	C04	H6	0.1	0.3
C06	C05	C10	C09	0.5	0.3
C06	C07	C08	C09	0.6	359.6
C08	C07	C06	H8	180.0	180.0
N01	C10	C05	C09	179.4	179.7
C05	C10	C09	C08	359.6	359.4
C05	C10	C09	H9	179.7	179.7
C10	N01	C02	N02	179.3	180.0
H3	N02	C02	H4	240.0	179.9
N01	C02	N02	H3	0.0	360.0
N01	C02	N02	H4	120.0	180.1
C02	N01	C10	C09	180.3	180.0
C08	C07	C06	H7	179.5	180.0
C06	C07	C08	H8	180.0	180.0
C10	C09	C08	C07	359.8	0.7
C07	C08	C09	H9	179.8	180.3
C07	C08	C11	H1	126.1	210.0
C07	C08	C11	H2	245.0	330.0
C05	C10	N01	C09	180.6	180.3
N01	C10	C09	C08	180.2	179.7
N01	C10	C09	H9	0.2	360.0
C09	C10	N01	C02	180.3	180.0
C07	C08	C09	C10	359.8	0.7
C08	C09	C10	H9	180.0	179.7
C09	C08	C07	H8	180.6	179.7
C10	C09	C08	H9	180.0	180.3
C09	C08	C11	H1	306.2	30.3
C09	C08	C11	H2	65.0	150.3
C10	C09	C08	C11	179.8	180.3
O12	C11	C08	H1	239.4	240.0
O12	C11	C08	H2	120.6	120.0
H1	C11	C08	H2	241.1	240.0
C08	C11	O12	H1	120.6	119.9
C08	C11	O12	H2	239.4	240.0
H1	C11	O12	H2	118.9	120.1
C21	O12	C11	H1	65.9	60.1
C21	O12	C11	H2	307.1	300.0
C26	C21	O12	C22	179.7	180.4
O12	C21	C22	C23	179.5	180.0
O12	C21	C22	H11	359.5	0.0
O12	C21	C26	C25	180.1	180.0
O12	C21	C26	H10	0.1	359.9
O12	C21	C22	C26	179.7	180.4
C22	C21	C26	C25	359.8	0.4
C22	C21	C26	H10	179.8	180.3
C21	C22	C23	C29	180.1	180.0
C21	C22	C23	C24	0.4	0.1
C23	C22	C21	H11	180.0	180.0
O12	C21	C26	C22	180.3	179.6
C26	C21	C22	C23	359.8	359.6
C26	C21	C22	H11	179.8	179.7
C21	C26	C25	C24	0.4	359.9
C21	C26	C25	C27	180.2	180.0
C25	C26	C21	H10	180.0	180.1
C21	C22	C23	H11	180.0	180.0
C29	C23	C22	C24	179.7	179.9
C22	C23	C29	N30	122.9	90.0
C22	C23	C29	H12	242.8	210.0
C22	C23	C29	H13	3.2	330.1
C22	C23	C24	H19	179.9	180.0
C25	C26	C21	C22	359.8	0.4
C21	C26	C25	H10	180.0	179.9
C26	C25	C24	H19	179.7	180.0
C26	C25	C27	C28	199.0	90.0
C26	C25	C27	H20	319.1	210.0
C26	C25	C27	H21	79.0	330.0
C22	C23	C29	C24	180.3	180.1
C29	C23	C22	H11	0.1	360.0
C29	C23	C24	H19	0.1	0.1
C23	C29	N30	C31	139.2	180.0
N30	C29	C23	H12	240.2	240.0
N30	C29	C23	H13	119.8	120.0
C23	C29	N30	H14	259.3	304.0
H12	C29	C23	H13	239.6	240.0
C22	C23	C24	C29	179.7	179.9
C24	C23	C22	H11	180.4	180.1
C26	C25	C24	C23	359.7	359.8
C24	C23	C29	N30	302.7	270.0
C24	C23	C29	H12	62.5	30.0
C24	C23	C29	H13	182.9	150.0
C25	C24	C23	H19	180.0	180.2
C26	C25	C24	C27	179.8	180.0
C24	C25	C26	H10	180.4	180.0
C23	C24	C25	H19	180.0	179.8
C26	C25	C27	C24	180.2	180.0
C27	C25	C26	H10	0.2	0.0
C27	C25	C24	H19	359.9	360.0
C28	C27	C25	H20	239.9	240.0
C28	C27	C25	H21	120.1	120.0
C25	C27	C28	H22	180.0	180.1
C25	C27	C28	H23	300.0	300.0
C25	C27	C28	H24	60.0	60.0
H20	C27	C25	H21	240.2	240.1
N30	C29	C23	C24	302.7	270.0
C23	C29	N30	H12	119.8	120.0
C23	C29	N30	H13	240.2	240.0
C31	N30	C29	H14	239.9	236.0
C29	N30	C31	H16	180.0	180.0
C29	N30	C31	H17	300.0	300.0
C29	N30	C31	H18	60.0	60.0
H12	C29	N30	H13	120.4	120.0
C25	C27	C28	H20	120.1	120.1
C25	C27	C28	H21	239.9	240.0
H20	C27	C28	H21	119.8	119.9
H22	C28	C27	H23	240.0	240.1
H22	C28	C27	H24	120.0	120.1
H23	C28	C27	H24	240.0	240.0
C31	N30	C29	H12	19.4	60.0
C31	N30	C29	H13	259.0	300.0
C29	N30	C31	H14	120.1	123.9
H16	C31	N30	H17	240.0	240.0
H16	C31	N30	H18	120.0	120.0
H17	C31	N30	H18	240.0	240.0
C08	C11	H1	H2	118.3	120.0
O12	C11	H1	H2	241.8	239.9
C08	C11	H2	H1	241.7	240.0
O12	C11	H2	H1	118.2	120.1
C02	N02	H3	H4	120.0	180.1
C02	N02	H4	H3	240.0	179.9
H6	C04	C03	H5	359.0	359.4
H7	C06	C07	C08	179.5	180.0
H7	C06	C07	H8	359.5	360.0
C06	C07	H8	C08	180.0	180.0
H8	C07	C06	H7	359.5	360.0
H8	C07	C08	C09	180.6	179.7
C10	C09	H9	C08	180.0	179.7
H10	C26	C21	C22	179.8	180.3
C21	C26	H10	C25	180.0	180.1
H10	C26	C25	C24	180.4	180.0
H10	C26	C25	C27	0.2	0.0
C21	C22	H11	C23	180.0	180.0
H11	C22	C23	C29	0.1	360.0
H11	C22	C23	C24	180.4	180.1
H12	C29	C23	C24	62.5	30.0
C23	C29	H12	N30	241.2	240.0
C23	C29	H12	H13	120.6	120.1
H12	C29	N30	C31	19.4	60.0
N30	C29	H12	H13	239.4	240.0
H12	C29	N30	H14	139.5	184.0
H13	C29	C23	C24	182.9	150.0
C23	C29	H13	N30	118.8	120.0
C23	C29	H13	H12	239.4	239.9
H13	C29	N30	C31	259.0	300.0
N30	C29	H13	H12	120.6	120.0
H13	C29	N30	H14	19.1	64.0
C29	N30	H14	C31	239.5	236.0
H14	N30	C29	H12	139.5	184.0
H14	N30	C29	H13	19.1	64.0
H14	N30	C31	H16	59.9	56.0
H14	N30	C31	H17	179.9	176.1
H14	N30	C31	H18	299.9	296.1
H16	C31	N30	H14	59.9	56.0
N30	C31	H16	H17	120.0	120.0
N30	C31	H16	H18	240.0	240.0
H17	C31	H16	H18	120.0	120.0
H17	C31	N30	H14	179.9	176.1
N30	C31	H17	H16	240.0	240.0
N30	C31	H17	H18	120.0	120.0
H16	C31	H17	H18	240.0	240.0
H18	C31	N30	H14	299.9	296.1
N30	C31	H18	H16	120.0	119.9
N30	C31	H18	H17	240.0	240.0
H16	C31	H18	H17	120.0	120.0
C25	C27	H20	C28	239.6	239.9
C25	C27	H20	H21	119.8	120.0
C28	C27	H20	H21	240.2	240.0
H20	C27	C28	H22	59.9	60.0
H20	C27	C28	H23	179.9	179.9
H20	C27	C28	H24	299.9	299.9
C25	C27	H21	C28	120.4	120.0
C25	C27	H21	H20	240.2	240.0
C28	C27	H21	H20	119.8	120.0
H21	C27	C28	H22	300.1	300.1
H21	C27	C28	H23	60.1	60.0
H21	C27	C28	H24	180.1	180.0
H22	C28	C27	H20	59.9	60.0
H22	C28	C27	H21	300.1	300.1
C27	C28	H22	H23	120.0	119.9
C27	C28	H22	H24	240.0	240.0
H23	C28	H22	H24	120.0	120.0
H23	C28	C27	H20	179.9	179.9
H23	C28	C27	H21	60.1	60.0
C27	C28	H23	H22	240.0	240.0
C27	C28	H23	H24	120.0	120.0
H22	C28	H23	H24	240.0	239.9
H24	C28	C27	H20	299.9	299.9
H24	C28	C27	H21	180.1	180.0
C27	C28	H24	H22	120.1	120.0
C27	C28	H24	H23	240.0	240.0
H22	C28	H24	H23	120.0	120.0