Atom Nomenclature for 8H1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8H1

Atom Name (V3) Atom Name (V2)
C1 C1
N1 N1
O1 O1
C2 C2
N2 N2
O2 O2
C3 C3
N3 N3
O3 O3
C4 C4
N4 N4
C5 C5
N5 N5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
H1 H1
H1A H1A
H1B H1B
H3 H3
HN3 HN3
HN3A HN3A
HN5 HN5
HN5A HN5A
H6 H6
H10 H10
H12 H12
H14 H14
H14A H14A
H14B H14B
H16 H16
H18 H18
H19 H19
H20 H20
H20A H20A
H21 H21
H22 H22
H22A H22A
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28