PDB Chemical Component 8GP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8GP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.531 1.530
C1 O5 1.441 1.426
C1 N1 1.482 1.465
C1 H1 1.100 1.090
C2 O2 1.430 1.429
C2 C3 1.530 1.533
C2 H2 1.100 1.090
O2 HO2 0.950 0.967
C3 O3 1.430 1.429
C3 C4 1.530 1.533
C3 H3 1.100 1.090
O3 HO3 0.950 0.967
C4 O4 1.430 1.429
C4 C5 1.533 1.530
C4 H4 1.100 1.090
O4 HO4 0.950 0.967
C5 O5 1.440 1.426
C5 C6 1.531 1.530
C5 H5 1.100 1.090
C6 O6 1.432 1.429
C6 H61 1.100 1.090
C6 H62 1.100 1.090
O6 HO6 0.950 0.967
N1 C7 1.332 1.348
N1 HN1 1.000 0.969
C7 O7 1.232 1.214
C7 C8 1.532 1.495
C8 O8 1.234 1.214
C8 N2 1.334 1.348
N2 C9 1.472 1.465
N2 HN2 1.000 0.969
C9 C10 1.533 1.529
C9 C11 1.534 1.530
C9 H9 1.099 1.090
C10 C11 1.530 1.529
C10 H101 1.100 1.090
C10 H102 1.100 1.090
C11 H111 1.100 1.090
C11 H112 1.100 1.090

Bond Angles for 8GP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O5 107.3 109.8
C2 C1 N1 108.6 109.3
C2 C1 H1 111.5 109.4
C1 C2 O2 107.9 109.6
C1 C2 C3 108.7 109.0
C1 C2 H2 110.9 109.5
O5 C1 N1 109.7 109.5
O5 C1 H1 110.4 109.4
C1 O5 C5 111.9 107.7
N1 C1 H1 109.2 109.4
C1 N1 C7 119.1 120.0
C1 N1 HN1 120.4 120.0
O2 C2 C3 109.1 109.6
O2 C2 H2 110.4 109.6
C2 O2 HO2 109.5 106.8
C3 C2 H2 109.7 109.5
C2 C3 O3 109.4 109.6
C2 C3 C4 109.9 108.6
C2 C3 H3 109.3 109.6
O3 C3 C4 109.6 109.7
O3 C3 H3 109.6 109.6
C3 O3 HO3 109.5 106.7
C4 C3 H3 109.1 109.6
C3 C4 O4 108.7 109.6
C3 C4 C5 110.1 109.0
C3 C4 H4 109.5 109.6
O4 C4 C5 109.5 109.5
O4 C4 H4 110.2 109.5
C4 O4 HO4 109.5 106.8
C5 C4 H4 108.8 109.6
C4 C5 O5 110.7 109.8
C4 C5 C6 108.6 109.5
C4 C5 H5 110.2 109.4
O5 C5 C6 112.0 109.4
O5 C5 H5 106.5 109.3
C6 C5 H5 108.8 109.4
C5 C6 O6 110.8 109.5
C5 C6 H61 108.8 109.4
C5 C6 H62 109.0 109.5
O6 C6 H61 108.7 109.5
O6 C6 H62 109.0 109.5
C6 O6 HO6 109.5 106.8
H61 C6 H62 110.5 109.5
C7 N1 HN1 120.5 120.0
N1 C7 O7 122.9 120.0
N1 C7 C8 118.3 120.0
O7 C7 C8 118.3 120.0
C7 C8 O8 118.3 120.0
C7 C8 N2 117.2 120.0
O8 C8 N2 124.5 120.0
C8 N2 C9 125.5 120.0
C8 N2 HN2 117.3 120.0
C9 N2 HN2 117.3 120.0
N2 C9 C10 115.1 117.5
N2 C9 C11 117.6 117.5
N2 C9 H9 94.3 115.6
C10 C9 C11 59.9 60.0
C10 C9 H9 136.2 117.5
C9 C10 C11 60.1 60.0
C9 C10 H101 135.9 117.5
C9 C10 H102 130.9 117.5
C11 C9 H9 134.1 117.5
C9 C11 C10 60.1 60.0
C9 C11 H111 136.0 117.5
C9 C11 H112 130.9 117.6
C11 C10 H101 135.9 117.5
C11 C10 H102 130.8 117.5
C10 C11 H111 136.0 117.5
C10 C11 H112 130.9 117.5
H101 C10 H102 74.8 115.5
H111 C11 H112 74.8 115.5

Torsion Angles for 8GP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C1 C2 N1 241.4 239.9
O5 C1 C2 H1 121.1 120.1
C2 C1 O5 C5 294.1 292.5
N1 C1 C2 H1 239.6 240.2
C2 C1 N1 C7 151.4 144.7
C2 C1 N1 HN1 331.4 324.7
O2 C2 C1 C3 118.2 120.0
O2 C2 C1 H2 238.9 239.8
C1 C2 O2 HO2 10.9 60.0
C3 C2 C1 H2 120.7 119.8
C1 C2 C3 O3 182.2 186.4
C1 C2 C3 C4 302.5 306.3
C1 C2 C3 H3 62.2 66.1
C2 C1 O5 N1 117.9 120.1
C2 C1 O5 H1 238.3 239.9
O5 C1 C2 O2 181.1 181.2
O5 C1 C2 C3 62.9 61.2
O5 C1 C2 H2 302.2 301.4
N1 C1 O5 H1 120.4 119.9
O5 C1 N1 C7 268.5 265.0
O5 C1 N1 HN1 88.5 85.0
C4 C5 O5 C1 61.7 67.6
C1 O5 C5 C6 183.1 187.7
C1 O5 C5 H5 301.9 307.6
C2 C1 N1 O5 243.0 239.6
C2 C1 N1 H1 121.8 119.8
N1 C1 C2 O2 299.7 301.3
N1 C1 C2 C3 181.4 181.3
N1 C1 C2 H2 60.7 61.5
O5 C1 N1 H1 238.8 240.1
N1 C1 O5 C5 176.2 172.4
C7 N1 C1 HN1 180.0 180.0
C1 N1 C7 O7 359.4 360.0
C1 N1 C7 C8 187.4 180.0
C2 C1 H1 O5 119.2 120.4
C2 C1 H1 N1 240.0 240.3
H1 C1 C2 O2 60.0 61.0
H1 C1 C2 C3 301.8 301.1
H1 C1 C2 H2 181.1 181.3
O5 C1 H1 N1 120.7 119.9
H1 C1 O5 C5 55.8 52.5
H1 C1 N1 C7 29.6 24.9
H1 C1 N1 HN1 209.6 204.9
O2 C2 C1 O5 181.1 181.2
O2 C2 C1 N1 299.7 301.3
O2 C2 C1 H1 60.0 61.0
C1 C2 O2 C3 242.1 240.4
C1 C2 O2 H2 121.4 120.2
C3 C2 O2 H2 239.3 239.8
O2 C2 C3 O3 64.8 66.5
O2 C2 C3 C4 185.1 186.3
O2 C2 C3 H3 304.8 306.1
C3 C2 C1 O5 62.9 61.2
C3 C2 C1 N1 181.4 181.3
C3 C2 C1 H1 301.8 301.1
C1 C2 C3 O2 117.4 119.9
C1 C2 C3 H2 238.6 240.2
O2 C2 C3 H2 121.1 120.2
C3 C2 O2 HO2 128.8 179.6
O3 C3 C2 C4 239.7 240.1
O3 C3 C2 H3 120.0 120.3
C2 C3 O3 HO3 202.3 300.0
C4 C3 C2 H3 240.3 240.2
C2 C3 C4 O4 172.3 173.7
C2 C3 C4 C5 52.4 53.8
C2 C3 C4 H4 292.8 293.8
H2 C2 C1 O5 302.2 301.4
H2 C2 C1 N1 60.7 61.5
H2 C2 C1 H1 181.1 181.3
C1 C2 H2 O2 240.4 239.8
C1 C2 H2 C3 120.1 119.5
O2 C2 H2 C3 239.6 239.8
H2 C2 O2 HO2 249.5 299.8
H2 C2 C3 O3 303.6 306.2
H2 C2 C3 C4 63.9 66.1
H2 C2 C3 H3 183.6 185.9
HO2 O2 C2 C3 128.8 179.6
HO2 O2 C2 H2 249.5 299.8
O3 C3 C2 H2 303.6 306.2
C2 C3 O3 C4 120.5 119.2
C2 C3 O3 H3 240.2 239.7
C4 C3 O3 H3 119.7 120.4
O3 C3 C4 O4 292.5 293.5
O3 C3 C4 C5 172.6 173.6
O3 C3 C4 H4 53.0 53.7
C4 C3 C2 H2 63.9 66.1
C2 C3 C4 O3 239.8 240.2
C2 C3 C4 H3 119.8 119.8
O3 C3 C4 H3 240.0 239.6
C4 C3 O3 HO3 81.8 180.8
O4 C4 C3 C5 119.9 119.9
O4 C4 C3 H4 239.6 239.8
C3 C4 O4 HO4 254.8 60.0
C5 C4 C3 H4 119.6 119.9
C3 C4 C5 O5 306.5 298.7
C3 C4 C5 C6 183.1 178.6
C3 C4 C5 H5 64.1 58.7
H3 C3 C2 H2 183.6 185.9
C2 C3 H3 O3 119.8 120.4
C2 C3 H3 C4 239.8 240.8
O3 C3 H3 C4 120.0 120.5
H3 C3 O3 HO3 322.1 60.4
H3 C3 C4 O4 52.5 53.9
H3 C3 C4 C5 292.6 294.0
H3 C3 C4 H4 173.0 174.1
HO3 O3 C3 C4 81.8 180.8
HO3 O3 C3 H3 322.1 60.4
O4 C4 C3 H3 52.5 53.9
C3 C4 O4 C5 239.7 240.4
C3 C4 O4 H4 120.0 120.2
C5 C4 O4 H4 240.4 239.8
O4 C4 C5 O5 187.0 178.8
O4 C4 C5 C6 63.6 58.7
O4 C4 C5 H5 304.6 298.8
C1 O5 C5 C4 61.7 67.6
C5 C4 C3 H3 292.6 294.0
C3 C4 C5 O4 119.5 119.9
C3 C4 C5 H4 239.9 240.1
O4 C4 C5 H4 120.5 120.2
C5 C4 O4 HO4 15.1 179.6
O5 C5 C4 C6 123.4 120.1
O5 C5 C4 H5 242.4 240.0
C6 C5 C4 H5 119.0 119.9
C4 C5 C6 O6 70.0 185.1
C4 C5 C6 H61 310.5 65.2
C4 C5 C6 H62 190.0 305.2
H4 C4 C3 H3 173.0 174.1
C3 C4 H4 O4 240.4 239.8
C3 C4 H4 C5 120.4 119.6
O4 C4 H4 C5 240.0 239.8
H4 C4 O4 HO4 134.7 299.8
H4 C4 C5 O5 66.5 58.6
H4 C4 C5 C6 303.2 298.5
H4 C4 C5 H5 184.1 178.6
HO4 O4 C4 C5 15.1 179.6
HO4 O4 C4 H4 134.7 299.8
C5 O5 C1 N1 176.2 172.4
C5 O5 C1 H1 55.8 52.5
O5 C5 C4 H4 66.5 58.6
C4 C5 O5 C6 238.7 239.9
C4 C5 O5 H5 119.8 120.0
C6 C5 O5 H5 241.1 240.1
O5 C5 C6 O6 307.4 64.8
O5 C5 C6 H61 188.0 304.9
O5 C5 C6 H62 67.4 184.8
C6 C5 C4 H4 303.2 298.5
C4 C5 C6 O5 122.6 120.3
C4 C5 C6 H5 240.1 240.1
O5 C5 C6 H5 117.5 119.8
O6 C6 C5 H61 119.4 120.0
O6 C6 C5 H62 240.0 240.0
C5 C6 O6 HO6 278.1 180.0
H61 C6 C5 H62 120.6 120.0
H5 C5 C4 H4 184.1 178.6
C4 C5 H5 O5 239.9 239.8
C4 C5 H5 C6 118.9 119.9
O5 C5 H5 C6 239.0 240.1
H5 C5 C6 O6 189.9 305.0
H5 C5 C6 H61 70.5 185.0
H5 C5 C6 H62 309.9 65.0
O6 C6 C5 H5 189.9 305.0
C5 C6 O6 H61 240.5 240.1
C5 C6 O6 H62 120.0 120.0
H61 C6 O6 H62 239.4 239.9
H61 C6 C5 H5 70.5 185.0
C5 C6 H61 O6 120.7 120.0
C5 C6 H61 H62 240.4 240.0
O6 C6 H61 H62 119.6 120.1
H61 C6 O6 HO6 37.5 300.0
H62 C6 C5 H5 309.9 65.0
C5 C6 H62 O6 238.9 240.0
C5 C6 H62 H61 119.5 120.0
O6 C6 H62 H61 240.5 240.0
H62 C6 O6 HO6 158.1 60.0
HO6 O6 C6 H61 37.5 300.0
HO6 O6 C6 H62 158.1 60.0
C7 N1 C1 H1 29.6 24.9
C1 N1 C7 HN1 180.0 180.0
O7 C7 N1 C8 172.1 180.0
N1 C7 C8 O8 156.6 0.0
N1 C7 C8 N2 338.4 180.0
HN1 N1 C1 H1 209.6 204.9
C1 N1 HN1 C7 180.0 180.0
HN1 N1 C7 O7 179.4 180.0
HN1 N1 C7 C8 7.3 360.0
O7 C7 N1 HN1 179.4 180.0
N1 C7 O7 C8 187.9 180.0
O7 C7 C8 O8 344.2 180.0
O7 C7 C8 N2 166.0 360.0
C8 C7 N1 HN1 7.3 360.0
N1 C7 C8 O7 172.4 180.0
O8 C8 C7 N2 178.2 180.0
C7 C8 N2 C9 180.4 180.0
C7 C8 N2 HN2 0.4 0.0
C7 C8 O8 N2 181.9 180.0
O8 C8 N2 C9 2.3 0.0
O8 C8 N2 HN2 182.3 180.0
C7 C8 N2 O8 178.1 180.0
C9 N2 C8 HN2 180.0 180.0
C8 N2 C9 C10 79.3 155.0
C8 N2 C9 C11 11.7 223.6
C8 N2 C9 H9 225.9 9.3
C8 N2 C9 HN2 180.0 180.0
C10 C9 N2 C11 67.6 291.4
C10 C9 N2 H9 213.4 145.7
N2 C9 C10 C11 251.4 107.5
N2 C9 C10 H101 124.7 214.9
N2 C9 C10 H102 11.4 359.9
C11 C9 N2 H9 145.8 214.3
N2 C9 C11 C10 104.5 252.5
N2 C9 C11 H111 337.8 360.0
N2 C9 C11 H112 224.5 145.0
C8 N2 HN2 C9 180.0 180.0
HN2 N2 C9 C10 259.3 335.0
HN2 N2 C9 C11 191.7 43.6
HN2 N2 C9 H9 45.9 189.3
C10 C9 N2 HN2 259.3 335.0
N2 C9 C10 H9 127.5 214.9
C11 C9 C10 H9 236.1 107.4
C10 C9 C11 C10 -0.0 -0.0
C10 C9 C11 H111 233.3 107.5
C10 C9 C11 H112 120.0 252.5
C11 C10 C9 H101 126.7 252.5
C11 C10 C9 H102 240.0 107.5
C9 C10 C11 H111 126.7 252.5
C9 C10 C11 H112 240.0 107.5
H101 C10 C9 H102 113.3 215.0
C11 C9 N2 HN2 191.7 43.6
N2 C9 C11 H9 231.4 145.0
C10 C9 C11 H9 126.8 252.5
C11 C9 C10 C11 360.0 360.0
C11 C9 C10 H101 233.3 107.5
C11 C9 C10 H102 120.0 252.5
C9 C11 C10 H101 126.7 252.5
C9 C11 C10 H102 240.0 107.5
C10 C11 C9 H111 126.7 252.5
C10 C11 C9 H112 240.0 107.5
H111 C11 C9 H112 113.3 215.0
H9 C9 N2 HN2 45.9 189.3
N2 C9 H9 C10 226.1 145.7
N2 C9 H9 C11 136.0 214.3
C10 C9 H9 C11 270.0 68.6
H9 C9 C10 C11 123.9 252.6
H9 C9 C10 H101 357.2 0.0
H9 C9 C10 H102 243.9 145.0
H9 C9 C11 C10 233.2 107.5
H9 C9 C11 H111 106.4 215.0
H9 C9 C11 H112 353.2 0.0
C11 C10 C9 C11 360.0 360.0
C11 C10 C9 H9 123.9 252.6
C9 C10 C11 H101 233.3 107.5
C9 C10 C11 H102 120.0 252.5
C10 C11 C9 H9 233.2 107.5
C9 C11 C10 H111 233.3 107.5
C9 C11 C10 H112 120.0 252.5
H101 C10 C11 H102 246.7 144.9
H111 C11 C10 H112 246.7 145.0
H101 C10 C9 C11 233.3 107.5
H101 C10 C9 H9 357.2 0.0
C9 C10 H101 C11 92.1 291.3
C9 C10 H101 H102 226.0 145.7
C11 C10 H101 H102 133.9 214.4
H101 C10 C11 H111 253.4 145.0
H101 C10 C11 H112 6.7 360.0
H102 C10 C9 C11 120.0 252.5
H102 C10 C9 H9 243.9 145.0
C9 C10 H102 C11 277.1 68.7
C9 C10 H102 H101 138.5 214.3
C11 C10 H102 H101 221.4 145.6
H102 C10 C11 H111 6.7 0.0
H102 C10 C11 H112 120.0 215.0
H111 C11 C9 H9 106.4 215.0
C9 C11 H111 C10 92.1 291.4
C9 C11 H111 H112 226.1 145.7
H111 C11 C10 H101 253.4 145.0
H111 C11 C10 H102 6.7 0.0
C10 C11 H111 H112 134.0 214.3
H112 C11 C9 H9 353.2 0.0
C9 C11 H112 C10 277.1 68.6
C9 C11 H112 H111 138.6 214.3
H112 C11 C10 H101 6.7 360.0
H112 C11 C10 H102 120.0 215.0
C10 C11 H112 H111 221.4 145.7