Atom Nomenclature for 8EY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8EY

Atom Name (V3) Atom Name (V2)
C23 C1
C24 C2
C25 C3
C26 C4
C22 C5
C21 C6
C12 C7
C11 C8
C08 C9
C07 C10
C06 C11
C09 C12
C10 C13
N01 N1
C05 C14
C04 C15
C03 C16
C02 C17
N02 N2
N31 N3
C30 C18
C27 C19
N28 N4
C29 C20
O13 O1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H20 H20
H21 H21