PDB Chemical Component 8EL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8EL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4' |
C4' |
1.335 |
1.386 |
| O1A |
PA |
1.477 |
1.481 |
| N3' |
C4' |
1.369 |
1.330 |
| N3' |
C2' |
1.320 |
1.317 |
| CM2 |
C2' |
1.442 |
1.508 |
| O1B |
PB |
1.438 |
1.480 |
| O3B |
PB |
1.464 |
1.610 |
| C4' |
C5' |
1.445 |
1.397 |
| O3A |
PB |
1.570 |
1.610 |
| O3A |
PA |
1.595 |
1.610 |
| C2' |
N1' |
1.376 |
1.317 |
| PB |
O2B |
1.611 |
1.610 |
| PA |
O2A |
1.459 |
1.609 |
| PA |
O7 |
1.590 |
1.609 |
| S1 |
C2 |
1.798 |
1.833 |
| S1 |
C5 |
1.747 |
1.777 |
| C2 |
N3 |
1.464 |
1.472 |
| C7 |
O7 |
1.434 |
1.429 |
| C7 |
C6 |
1.502 |
1.531 |
| C5' |
C6' |
1.372 |
1.380 |
| C5' |
C7' |
1.467 |
1.507 |
| N1' |
C6' |
1.387 |
1.326 |
| N3 |
C7' |
1.473 |
1.465 |
| N3 |
C4 |
1.360 |
1.378 |
| C5 |
C6 |
1.491 |
1.507 |
| C5 |
C4 |
1.354 |
1.316 |
| C4 |
CM4 |
1.509 |
1.507 |
| C6' |
H1 |
1.080 |
1.080 |
| CM4 |
H2 |
1.100 |
1.090 |
| CM4 |
H3 |
1.100 |
1.090 |
| CM4 |
H4 |
1.100 |
1.090 |
| CM2 |
H5 |
1.100 |
1.090 |
| CM2 |
H6 |
1.100 |
1.091 |
| CM2 |
H7 |
1.100 |
1.090 |
| C7 |
H8 |
1.100 |
1.090 |
| C7 |
H9 |
1.100 |
1.091 |
| C6 |
H10 |
1.100 |
1.091 |
| C6 |
H11 |
1.100 |
1.090 |
| C2 |
H12 |
1.100 |
1.089 |
| C2 |
H13 |
1.101 |
1.090 |
| C7' |
H14 |
1.100 |
1.090 |
| C7' |
H15 |
1.100 |
1.090 |
| N4' |
H16 |
1.000 |
0.970 |
| N4' |
H17 |
1.000 |
0.970 |
| O2B |
H18 |
0.950 |
0.966 |
| O3B |
H19 |
0.950 |
0.968 |
| O2A |
H20 |
0.950 |
0.967 |
Bond Angles for 8EL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1A |
PA |
O3A |
109.0 |
109.5 |
| O1A |
PA |
O2A |
116.6 |
109.4 |
| O1A |
PA |
O7 |
113.1 |
109.4 |
| O1B |
PB |
O3B |
122.1 |
109.5 |
| O1B |
PB |
O3A |
108.2 |
109.5 |
| O1B |
PB |
O2B |
105.1 |
109.5 |
| O3B |
PB |
O3A |
110.4 |
109.4 |
| PB |
O3B |
H19 |
109.5 |
114.0 |
| C4' |
C5' |
C6' |
116.5 |
118.3 |
| C4' |
C5' |
C7' |
125.2 |
120.8 |
| PB |
O3A |
PA |
133.8 |
134.0 |
| PB |
O2B |
H18 |
109.5 |
114.0 |
| PA |
O2A |
H20 |
109.5 |
114.0 |
| S1 |
C2 |
H12 |
110.8 |
110.8 |
| S1 |
C2 |
H13 |
110.8 |
111.0 |
| C2 |
N3 |
C7' |
123.0 |
122.7 |
| C2 |
N3 |
C4 |
111.2 |
114.5 |
| N3 |
C2 |
H12 |
110.8 |
110.9 |
| N3 |
C2 |
H13 |
110.8 |
110.9 |
| C6 |
C7 |
O7 |
108.6 |
109.5 |
| O7 |
C7 |
H8 |
109.7 |
109.5 |
| O7 |
C7 |
H9 |
109.7 |
109.5 |
| C6 |
C7 |
H8 |
109.7 |
109.5 |
| C6 |
C7 |
H9 |
109.7 |
109.5 |
| C7 |
C6 |
H10 |
109.0 |
109.5 |
| C7 |
C6 |
H11 |
109.1 |
109.5 |
| C6' |
C5' |
C7' |
118.3 |
120.9 |
| C5' |
C6' |
H1 |
120.1 |
120.4 |
| C5' |
C7' |
H14 |
108.8 |
109.4 |
| C5' |
C7' |
H15 |
108.8 |
109.4 |
| N1' |
C6' |
H1 |
120.1 |
120.4 |
| N3 |
C7' |
H14 |
108.8 |
109.5 |
| N3 |
C7' |
H15 |
108.8 |
109.5 |
| C5 |
C6 |
H10 |
109.0 |
109.5 |
| C5 |
C6 |
H11 |
109.0 |
109.5 |
| C4 |
CM4 |
H2 |
109.5 |
109.5 |
| C4 |
CM4 |
H3 |
109.5 |
109.5 |
| C4 |
CM4 |
H4 |
109.5 |
109.5 |
| H2 |
CM4 |
H3 |
109.5 |
109.4 |
| H2 |
CM4 |
H4 |
109.5 |
109.5 |
| H3 |
CM4 |
H4 |
109.5 |
109.4 |
| H5 |
CM2 |
H6 |
109.5 |
109.5 |
| H5 |
CM2 |
H7 |
109.5 |
109.5 |
| H6 |
CM2 |
H7 |
109.5 |
109.4 |
| H8 |
C7 |
H9 |
109.5 |
109.5 |
| H10 |
C6 |
H11 |
109.5 |
109.5 |
| H12 |
C2 |
H13 |
109.5 |
110.8 |
| H14 |
C7' |
H15 |
109.4 |
109.5 |
| H16 |
N4' |
H17 |
109.4 |
120.0 |
Torsion Angles for 8EL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| PB |
O3A |
PA |
O1A |
218.7 |
320.0 |
| O1A |
PA |
O2A |
H20 |
0.0 |
180.1 |
| N3' |
C4' |
C5' |
C7' |
180.4 |
180.0 |
| O3B |
PB |
O1B |
O3A |
129.7 |
240.0 |
| O1B |
PB |
O3B |
H19 |
360.0 |
299.9 |
| O1B |
PB |
O3A |
PA |
186.6 |
45.0 |
| O1B |
PB |
O2B |
H18 |
0.0 |
180.0 |
| O1B |
PB |
O3B |
O3A |
231.2 |
120.0 |
| O1B |
PB |
O3B |
O2B |
119.4 |
239.9 |
| O3B |
PB |
O3A |
PA |
50.6 |
165.0 |
| O3B |
PB |
O2B |
H18 |
130.1 |
60.0 |
| C6' |
C5' |
C4' |
C7' |
178.2 |
180.0 |
| C4' |
C5' |
C6' |
H1 |
180.0 |
180.0 |
| C4' |
C5' |
C7' |
H14 |
55.3 |
201.6 |
| C4' |
C5' |
C7' |
H15 |
174.5 |
321.5 |
| O1A |
PA |
O3A |
PB |
218.7 |
320.0 |
| O1B |
PB |
O3A |
O3B |
135.9 |
240.0 |
| O1B |
PB |
O3A |
O2B |
248.5 |
120.0 |
| O3A |
PB |
O3B |
H19 |
128.8 |
179.9 |
| O3A |
PB |
O2B |
H18 |
246.3 |
300.0 |
| O1A |
PA |
O3A |
O2A |
231.2 |
240.0 |
| O1A |
PA |
O3A |
O7 |
119.5 |
120.0 |
| O3A |
PA |
O2A |
H20 |
235.5 |
60.1 |
| C2' |
N1' |
C6' |
H1 |
179.2 |
180.0 |
| O1B |
PB |
O2B |
O3B |
229.9 |
120.0 |
| O1B |
PB |
O2B |
O3A |
113.7 |
240.0 |
| O1A |
PA |
O2A |
O3A |
124.6 |
120.0 |
| O1A |
PA |
O2A |
O7 |
233.3 |
240.1 |
| O1A |
PA |
O7 |
O3A |
243.5 |
240.0 |
| O1A |
PA |
O7 |
O2A |
128.8 |
120.0 |
| O7 |
PA |
O2A |
H20 |
126.7 |
300.0 |
| PA |
O7 |
C7 |
H8 |
317.3 |
60.0 |
| PA |
O7 |
C7 |
H9 |
77.6 |
300.0 |
| N3 |
C2 |
S1 |
H12 |
240.9 |
118.2 |
| N3 |
C2 |
S1 |
H13 |
119.1 |
241.7 |
| H12 |
C2 |
S1 |
H13 |
238.3 |
123.6 |
| C5 |
S1 |
C2 |
H12 |
91.3 |
241.8 |
| C5 |
S1 |
C2 |
H13 |
213.1 |
118.3 |
| S1 |
C5 |
C6 |
H10 |
179.5 |
154.9 |
| S1 |
C5 |
C6 |
H11 |
60.0 |
34.9 |
| S1 |
C2 |
N3 |
H12 |
119.1 |
241.9 |
| S1 |
C2 |
N3 |
H13 |
240.9 |
118.3 |
| C2 |
N3 |
C7' |
H14 |
358.3 |
152.6 |
| C2 |
N3 |
C7' |
H15 |
239.1 |
32.5 |
| H12 |
C2 |
N3 |
H13 |
121.7 |
236.4 |
| O1A |
PA |
O7 |
C7 |
321.9 |
55.0 |
| C6 |
C7 |
O7 |
H8 |
240.1 |
120.0 |
| C6 |
C7 |
O7 |
H9 |
119.8 |
240.0 |
| O7 |
C7 |
C6 |
H10 |
297.2 |
300.0 |
| O7 |
C7 |
C6 |
H11 |
56.7 |
60.0 |
| H8 |
C7 |
O7 |
H9 |
239.7 |
120.0 |
| O7 |
C7 |
C6 |
H8 |
119.9 |
240.0 |
| O7 |
C7 |
C6 |
H9 |
240.1 |
120.0 |
| C5 |
C6 |
C7 |
H10 |
239.8 |
240.0 |
| C5 |
C6 |
C7 |
H11 |
120.3 |
120.0 |
| H8 |
C7 |
C6 |
H9 |
120.3 |
240.0 |
| H10 |
C6 |
C7 |
H11 |
240.5 |
240.0 |
| C4' |
C5' |
C6' |
C7' |
181.7 |
180.0 |
| C6' |
C5' |
C7' |
H14 |
237.1 |
21.6 |
| C6' |
C5' |
C7' |
H15 |
356.3 |
141.5 |
| N1' |
C6' |
C5' |
H1 |
180.0 |
180.0 |
| C4' |
C5' |
C7' |
C6' |
178.2 |
180.0 |
| C2 |
N3 |
C7' |
C5' |
118.7 |
272.6 |
| C7' |
C5' |
C6' |
H1 |
358.3 |
0.0 |
| N3 |
C7' |
C5' |
H14 |
239.6 |
240.0 |
| N3 |
C7' |
C5' |
H15 |
120.4 |
120.0 |
| H14 |
C7' |
C5' |
H15 |
240.9 |
240.1 |
| N1' |
C6' |
C5' |
C7' |
178.3 |
180.0 |
| C5' |
C6' |
N1' |
H1 |
180.0 |
180.0 |
| C2 |
N3 |
C7' |
C4 |
204.1 |
179.9 |
| C7' |
N3 |
C2 |
H12 |
73.9 |
298.1 |
| C7' |
N3 |
C2 |
H13 |
312.2 |
61.7 |
| C5' |
C7' |
N3 |
H14 |
120.4 |
120.0 |
| C5' |
C7' |
N3 |
H15 |
239.6 |
240.0 |
| H14 |
C7' |
N3 |
H15 |
119.2 |
120.0 |
| C2 |
N3 |
C4 |
C7' |
158.5 |
180.1 |
| C4 |
N3 |
C2 |
H12 |
275.7 |
118.1 |
| C4 |
N3 |
C2 |
H13 |
154.0 |
241.6 |
| C4 |
N3 |
C7' |
H14 |
154.2 |
332.6 |
| C4 |
N3 |
C7' |
H15 |
35.1 |
212.6 |
| N3 |
C4 |
CM4 |
H2 |
180.0 |
174.8 |
| N3 |
C4 |
CM4 |
H3 |
300.0 |
294.8 |
| N3 |
C4 |
CM4 |
H4 |
60.0 |
54.8 |
| C5 |
C6 |
C7 |
O7 |
177.0 |
180.0 |
| C5 |
C6 |
C7 |
H8 |
57.1 |
300.0 |
| C5 |
C6 |
C7 |
H9 |
296.8 |
60.0 |
| C7 |
C6 |
C5 |
H10 |
120.2 |
120.0 |
| C7 |
C6 |
C5 |
H11 |
239.7 |
240.0 |
| H10 |
C6 |
C5 |
H11 |
119.5 |
120.0 |
| C2 |
N3 |
C4 |
C5 |
335.8 |
0.0 |
| C4 |
C5 |
C6 |
H10 |
1.2 |
335.0 |
| C4 |
C5 |
C6 |
H11 |
241.7 |
215.0 |
| C5 |
C4 |
CM4 |
H2 |
2.5 |
354.8 |
| C5 |
C4 |
CM4 |
H3 |
122.5 |
114.8 |
| C5 |
C4 |
CM4 |
H4 |
242.5 |
234.7 |
| H2 |
CM4 |
C4 |
H3 |
240.0 |
240.0 |
| H2 |
CM4 |
C4 |
H4 |
120.0 |
120.0 |
| H3 |
CM4 |
C4 |
H4 |
240.0 |
240.0 |
| H1 |
C6' |
C5' |
C7' |
358.3 |
0.0 |
| C4 |
CM4 |
H2 |
H3 |
120.0 |
120.0 |
| C4 |
CM4 |
H2 |
H4 |
240.0 |
240.0 |
| H3 |
CM4 |
H2 |
H4 |
120.0 |
120.0 |
| C4 |
CM4 |
H3 |
H2 |
240.0 |
240.0 |
| C4 |
CM4 |
H3 |
H4 |
120.0 |
120.0 |
| H2 |
CM4 |
H3 |
H4 |
240.0 |
240.0 |
| C4 |
CM4 |
H4 |
H2 |
120.0 |
120.0 |
| C4 |
CM4 |
H4 |
H3 |
240.0 |
240.0 |
| H2 |
CM4 |
H4 |
H3 |
120.0 |
120.0 |
| H6 |
CM2 |
H5 |
H7 |
120.0 |
119.9 |
| H5 |
CM2 |
H6 |
H7 |
240.0 |
240.0 |
| H5 |
CM2 |
H7 |
H6 |
120.0 |
120.0 |
| C6 |
C7 |
H8 |
O7 |
119.2 |
239.9 |
| O7 |
C7 |
H8 |
H9 |
120.4 |
240.0 |
| C6 |
C7 |
H8 |
H9 |
239.6 |
120.0 |
| H8 |
C7 |
C6 |
H10 |
177.3 |
60.0 |
| H8 |
C7 |
C6 |
H11 |
296.9 |
180.0 |
| C6 |
C7 |
H9 |
O7 |
240.8 |
120.0 |
| O7 |
C7 |
H9 |
H8 |
239.6 |
120.0 |
| C6 |
C7 |
H9 |
H8 |
120.4 |
240.0 |
| H9 |
C7 |
C6 |
H10 |
57.0 |
180.0 |
| H9 |
C7 |
C6 |
H11 |
176.6 |
300.0 |
| H10 |
C6 |
C7 |
O7 |
297.2 |
300.0 |
| H10 |
C6 |
C7 |
H8 |
177.3 |
60.0 |
| H10 |
C6 |
C7 |
H9 |
57.0 |
180.0 |
| C7 |
C6 |
H10 |
H11 |
119.2 |
120.0 |
| C5 |
C6 |
H10 |
H11 |
240.8 |
240.0 |
| H11 |
C6 |
C7 |
O7 |
56.7 |
60.0 |
| H11 |
C6 |
C7 |
H8 |
296.9 |
180.0 |
| H11 |
C6 |
C7 |
H9 |
176.6 |
300.0 |
| C7 |
C6 |
H11 |
H10 |
240.8 |
240.0 |
| C5 |
C6 |
H11 |
H10 |
119.2 |
120.0 |
| S1 |
C2 |
H12 |
H13 |
122.5 |
236.3 |
| H12 |
C2 |
N3 |
C7' |
73.9 |
298.1 |
| H12 |
C2 |
N3 |
C4 |
275.7 |
118.1 |
| N3 |
C2 |
H12 |
H13 |
237.5 |
123.6 |
| S1 |
C2 |
H13 |
H12 |
237.5 |
123.5 |
| H13 |
C2 |
N3 |
C7' |
312.2 |
61.7 |
| H13 |
C2 |
N3 |
C4 |
154.0 |
241.6 |
| N3 |
C2 |
H13 |
H12 |
122.5 |
236.4 |
| C5' |
C7' |
H14 |
H15 |
118.7 |
119.9 |
| N3 |
C7' |
H14 |
H15 |
241.2 |
239.9 |
| C5' |
C7' |
H15 |
H14 |
241.3 |
240.1 |
| N3 |
C7' |
H15 |
H14 |
118.7 |
120.1 |
| H19 |
O3B |
PB |
O3A |
128.8 |
179.9 |