PDB Chemical Component 8DR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8DR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.574 |
1.507 |
| O |
C |
1.272 |
1.209 |
| C |
OXT |
1.270 |
1.342 |
| CAY |
N |
1.334 |
1.348 |
| N |
CA |
1.490 |
1.465 |
| N |
HN |
0.999 |
0.970 |
| CA |
CB |
1.564 |
1.529 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.533 |
1.531 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CD |
CG |
1.563 |
1.529 |
| CD |
NE |
1.492 |
1.465 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.090 |
| NE |
CZ |
1.347 |
1.375 |
| NE |
HNE |
1.000 |
0.970 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| NH2 |
CZ |
1.318 |
1.304 |
| CZ |
NH1 |
1.319 |
1.375 |
| OAD |
CAY |
1.248 |
1.218 |
| SBF |
OAE |
1.492 |
1.420 |
| OAF |
SBF |
1.487 |
1.421 |
| CAH |
CAJ |
1.395 |
1.394 |
| CAH |
CAL |
1.394 |
1.355 |
| CAH |
HAH |
1.080 |
1.080 |
| SAV |
CAI |
1.707 |
1.706 |
| CAI |
CAK |
1.336 |
1.335 |
| CAI |
HAI |
1.080 |
1.080 |
| CAJ |
CBA |
1.382 |
1.355 |
| CAJ |
HAJ |
1.081 |
1.080 |
| CAK |
CAZ |
1.344 |
1.383 |
| CAK |
HAK |
1.080 |
1.080 |
| CAL |
CBC |
1.399 |
1.418 |
| CAL |
HAL |
1.080 |
1.080 |
| CBC |
NAP |
1.331 |
1.323 |
| NAP |
SAU |
1.662 |
1.556 |
| CBD |
NAQ |
1.331 |
1.324 |
| NAQ |
SAU |
1.583 |
1.556 |
| CAZ |
NAT |
1.310 |
1.393 |
| NAT |
SBF |
1.622 |
1.656 |
| NAT |
HNAT |
1.000 |
0.970 |
| SAV |
CBB |
1.688 |
1.758 |
| CBB |
CAY |
1.528 |
1.414 |
| CBB |
CAZ |
1.374 |
1.375 |
| CBA |
SBF |
1.701 |
1.763 |
| CBA |
CBD |
1.357 |
1.418 |
| CBC |
CBD |
1.407 |
1.461 |
| NH1 |
HNH1 |
1.000 |
0.970 |
| NH1 |
HNHA |
1.000 |
0.970 |
| NH2 |
HNH2 |
1.000 |
0.970 |
| OXT |
HOXT |
0.950 |
0.967 |
Bond Angles for 8DR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
118.1 |
120.0 |
| O |
C |
OXT |
126.5 |
120.0 |
| C |
OXT |
HOXT |
109.5 |
117.0 |
| CAY |
N |
HN |
121.3 |
120.0 |
| CA |
N |
HN |
121.3 |
120.0 |
| N |
CA |
CB |
112.2 |
109.5 |
| N |
CA |
HA |
109.9 |
109.4 |
| CB |
CA |
HA |
104.6 |
109.5 |
| CA |
CB |
CG |
110.4 |
109.5 |
| CA |
CB |
HB |
109.2 |
109.5 |
| CA |
CB |
HBA |
109.1 |
109.5 |
| CG |
CB |
HB |
109.2 |
109.4 |
| CG |
CB |
HBA |
109.2 |
109.5 |
| CB |
CG |
CD |
114.9 |
109.5 |
| CB |
CG |
HG |
107.7 |
109.4 |
| CB |
CG |
HGA |
107.7 |
109.5 |
| HB |
CB |
HBA |
109.8 |
109.5 |
| NE |
CD |
CG |
108.9 |
109.5 |
| CG |
CD |
HD |
109.7 |
109.5 |
| CG |
CD |
HDA |
109.7 |
109.5 |
| CD |
CG |
HG |
107.7 |
109.5 |
| CD |
CG |
HGA |
107.7 |
109.5 |
| NE |
CD |
HD |
109.6 |
109.5 |
| NE |
CD |
HDA |
109.6 |
109.5 |
| CD |
NE |
CZ |
124.0 |
120.0 |
| CD |
NE |
HNE |
118.0 |
120.0 |
| HD |
CD |
HDA |
109.3 |
109.4 |
| CZ |
NE |
HNE |
118.0 |
120.0 |
| NE |
CZ |
NH1 |
120.8 |
120.0 |
| HG |
CG |
HGA |
111.2 |
109.5 |
| CZ |
NH1 |
HNH1 |
120.0 |
120.0 |
| CZ |
NH1 |
HNHA |
120.0 |
120.0 |
| OAF |
SBF |
NAT |
111.8 |
106.4 |
| OAF |
SBF |
CBA |
107.0 |
106.4 |
| CAJ |
CAH |
CAL |
119.1 |
121.6 |
| CAJ |
CAH |
HAH |
120.5 |
119.2 |
| CAH |
CAJ |
CBA |
119.7 |
121.6 |
| CAH |
CAJ |
HAJ |
120.2 |
119.2 |
| CAL |
CAH |
HAH |
120.5 |
119.2 |
| CAH |
CAL |
CBC |
120.7 |
119.9 |
| CAH |
CAL |
HAL |
119.7 |
120.1 |
| SAV |
CAI |
HAI |
124.2 |
124.4 |
| CAK |
CAI |
HAI |
124.2 |
124.4 |
| CAI |
CAK |
CAZ |
113.7 |
115.1 |
| CAI |
CAK |
HAK |
123.2 |
122.4 |
| CBA |
CAJ |
HAJ |
120.2 |
119.2 |
| CAJ |
CBA |
SBF |
122.3 |
120.1 |
| CAJ |
CBA |
CBD |
121.9 |
119.9 |
| CAZ |
CAK |
HAK |
123.2 |
122.5 |
| CAK |
CAZ |
NAT |
123.3 |
123.5 |
| CBC |
CAL |
HAL |
119.6 |
120.0 |
| CAL |
CBC |
NAP |
128.4 |
131.0 |
| CAL |
CBC |
CBD |
118.9 |
118.5 |
| NAP |
SAU |
NAQ |
100.8 |
100.2 |
| CAZ |
NAT |
SBF |
119.4 |
120.0 |
| CAZ |
NAT |
HNAT |
106.3 |
120.0 |
| SBF |
NAT |
HNAT |
106.3 |
120.0 |
| NAT |
SBF |
CBA |
112.0 |
107.2 |
| SAV |
CBB |
CAY |
122.8 |
125.5 |
| SAV |
CBB |
CAZ |
111.0 |
109.0 |
| CBD |
CBA |
SBF |
115.8 |
120.1 |
| CBA |
CBD |
CBC |
119.7 |
118.5 |
| HNH1 |
NH1 |
HNHA |
120.0 |
120.0 |
Torsion Angles for 8DR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
178.4 |
179.7 |
| CA |
C |
OXT |
HOXT |
178.2 |
179.7 |
| CA |
C |
O |
OXT |
181.7 |
180.3 |
| O |
C |
OXT |
HOXT |
0.0 |
0.0 |
| CA |
N |
CAY |
HN |
180.0 |
180.0 |
| CAY |
N |
CA |
HA |
345.0 |
35.0 |
| N |
CA |
C |
OXT |
310.8 |
180.0 |
| CAY |
N |
CA |
HN |
180.0 |
180.0 |
| CB |
CA |
N |
HA |
115.9 |
120.0 |
| N |
CA |
CB |
CG |
185.3 |
295.1 |
| N |
CA |
CB |
HB |
305.3 |
55.0 |
| N |
CA |
CB |
HBA |
65.3 |
175.0 |
| HN |
N |
CA |
CB |
281.0 |
335.0 |
| HN |
N |
CA |
HA |
165.1 |
215.0 |
| CB |
CA |
C |
OXT |
75.5 |
300.0 |
| CB |
CA |
N |
HN |
281.0 |
335.0 |
| N |
CA |
CB |
HA |
240.9 |
240.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.1 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| CA |
CB |
CG |
CD |
112.8 |
180.0 |
| CA |
CB |
CG |
HG |
232.8 |
300.0 |
| CA |
CB |
CG |
HGA |
352.8 |
60.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| HA |
CA |
C |
OXT |
191.3 |
60.0 |
| HA |
CA |
N |
HN |
165.1 |
215.0 |
| N |
CA |
HA |
CB |
120.6 |
120.1 |
| HA |
CA |
CB |
CG |
304.4 |
55.1 |
| HA |
CA |
CB |
HB |
64.4 |
175.0 |
| HA |
CA |
CB |
HBA |
184.4 |
295.0 |
| CG |
CB |
CA |
HA |
304.4 |
55.1 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
239.9 |
| HB |
CB |
CG |
HBA |
120.0 |
119.9 |
| NE |
CD |
CG |
CB |
136.9 |
180.0 |
| CB |
CG |
CD |
HD |
256.9 |
60.0 |
| CB |
CG |
CD |
HDA |
16.9 |
300.0 |
| CD |
CG |
CB |
HG |
240.0 |
240.0 |
| CD |
CG |
CB |
HGA |
120.0 |
120.0 |
| HG |
CG |
CB |
HGA |
240.0 |
240.0 |
| HB |
CB |
CA |
HA |
64.4 |
175.0 |
| CA |
CB |
HB |
CG |
239.2 |
240.0 |
| CA |
CB |
HB |
HBA |
119.6 |
120.1 |
| CG |
CB |
HB |
HBA |
240.4 |
240.1 |
| HB |
CB |
CG |
CD |
352.8 |
60.0 |
| HB |
CB |
CG |
HG |
112.8 |
180.0 |
| HB |
CB |
CG |
HGA |
232.8 |
300.0 |
| HBA |
CB |
CA |
HA |
184.4 |
295.0 |
| CA |
CB |
HBA |
CG |
120.8 |
120.1 |
| CA |
CB |
HBA |
HB |
240.4 |
239.9 |
| CG |
CB |
HBA |
HB |
119.6 |
119.9 |
| HBA |
CB |
CG |
CD |
232.8 |
300.1 |
| HBA |
CB |
CG |
HG |
352.8 |
60.1 |
| HBA |
CB |
CG |
HGA |
112.8 |
180.0 |
| CD |
CG |
CB |
HB |
352.8 |
60.0 |
| CD |
CG |
CB |
HBA |
232.8 |
300.1 |
| CB |
CG |
CD |
HG |
120.0 |
119.9 |
| CB |
CG |
CD |
HGA |
240.0 |
240.0 |
| NE |
CD |
CG |
HD |
240.0 |
120.0 |
| NE |
CD |
CG |
HDA |
120.0 |
240.0 |
| CG |
CD |
NE |
CZ |
116.2 |
180.0 |
| CG |
CD |
NE |
HNE |
296.1 |
359.9 |
| HD |
CD |
CG |
HDA |
240.0 |
120.0 |
| HG |
CG |
CD |
HGA |
120.0 |
120.1 |
| CB |
CG |
CD |
NE |
136.9 |
180.0 |
| CG |
CD |
NE |
HD |
120.0 |
239.9 |
| CG |
CD |
NE |
HDA |
240.0 |
120.0 |
| NE |
CD |
CG |
HG |
16.9 |
60.1 |
| NE |
CD |
CG |
HGA |
256.9 |
300.0 |
| HD |
CD |
NE |
HDA |
120.0 |
240.1 |
| CZ |
NE |
CD |
HNE |
180.0 |
180.1 |
| CD |
NE |
CZ |
NH1 |
180.6 |
180.0 |
| NE |
CD |
HD |
CG |
119.5 |
240.0 |
| CG |
CD |
HD |
HDA |
120.2 |
240.0 |
| HD |
CD |
CG |
HG |
136.9 |
300.0 |
| HD |
CD |
CG |
HGA |
16.9 |
180.0 |
| NE |
CD |
HD |
HDA |
239.8 |
120.0 |
| HD |
CD |
NE |
CZ |
356.2 |
300.1 |
| HD |
CD |
NE |
HNE |
176.1 |
120.0 |
| NE |
CD |
HDA |
CG |
240.5 |
120.0 |
| CG |
CD |
HDA |
HD |
239.8 |
120.0 |
| HDA |
CD |
CG |
HG |
256.9 |
180.0 |
| HDA |
CD |
CG |
HGA |
136.9 |
60.0 |
| NE |
CD |
HDA |
HD |
120.2 |
240.0 |
| HDA |
CD |
NE |
CZ |
236.1 |
60.0 |
| HDA |
CD |
NE |
HNE |
56.1 |
240.0 |
| CZ |
NE |
CD |
CG |
116.2 |
180.0 |
| CZ |
NE |
CD |
HD |
356.2 |
300.1 |
| CZ |
NE |
CD |
HDA |
236.1 |
60.0 |
| CD |
NE |
CZ |
HNE |
180.0 |
179.9 |
| NE |
CZ |
NH1 |
HNH1 |
180.0 |
359.9 |
| NE |
CZ |
NH1 |
HNHA |
0.0 |
180.0 |
| HNE |
NE |
CD |
CG |
296.1 |
359.9 |
| HNE |
NE |
CD |
HD |
176.1 |
120.0 |
| HNE |
NE |
CD |
HDA |
56.1 |
240.0 |
| CD |
NE |
HNE |
CZ |
180.0 |
180.1 |
| HNE |
NE |
CZ |
NH1 |
0.6 |
0.1 |
| HG |
CG |
CB |
HB |
112.8 |
180.0 |
| HG |
CG |
CB |
HBA |
352.8 |
60.1 |
| CB |
CG |
HG |
CD |
235.6 |
240.0 |
| CB |
CG |
HG |
HGA |
117.8 |
120.0 |
| HG |
CG |
CD |
HD |
136.9 |
300.0 |
| HG |
CG |
CD |
HDA |
256.9 |
180.0 |
| CD |
CG |
HG |
HGA |
242.2 |
239.9 |
| HGA |
CG |
CB |
HB |
232.8 |
300.0 |
| HGA |
CG |
CB |
HBA |
112.8 |
180.0 |
| CB |
CG |
HGA |
CD |
124.4 |
120.0 |
| CB |
CG |
HGA |
HG |
242.2 |
240.1 |
| HGA |
CG |
CD |
HD |
16.9 |
180.0 |
| HGA |
CG |
CD |
HDA |
136.9 |
60.0 |
| CD |
CG |
HGA |
HG |
117.8 |
120.1 |
| NH2 |
CZ |
NE |
HNE |
180.6 |
180.0 |
| NH2 |
CZ |
NH1 |
HNH1 |
0.0 |
180.0 |
| NH2 |
CZ |
NH1 |
HNHA |
180.0 |
0.1 |
| NH1 |
CZ |
NE |
HNE |
0.6 |
0.1 |
| HNH1 |
NH1 |
CZ |
HNHA |
180.0 |
179.9 |
| OAD |
CAY |
N |
HN |
178.8 |
180.0 |
| SAV |
CBB |
CAY |
OAD |
2.0 |
180.0 |
| CAJ |
CBA |
SBF |
OAF |
348.2 |
228.5 |
| CAZ |
NAT |
SBF |
OAF |
52.3 |
311.5 |
| OAF |
SBF |
NAT |
HNAT |
292.4 |
131.5 |
| NAT |
SBF |
OAF |
CBA |
237.0 |
114.1 |
| CBD |
CBA |
SBF |
OAF |
167.0 |
48.5 |
| CAL |
CAH |
CAJ |
HAH |
180.0 |
180.3 |
| CAJ |
CAH |
CAL |
CBC |
360.0 |
360.0 |
| CAJ |
CAH |
CAL |
HAL |
180.0 |
180.0 |
| CBA |
CAJ |
CAH |
HAJ |
180.0 |
180.0 |
| CAH |
CAJ |
CBA |
SBF |
179.7 |
180.0 |
| CAH |
CAJ |
CBA |
CBD |
0.9 |
360.0 |
| CAJ |
CAH |
CAL |
HAH |
180.0 |
179.7 |
| CAL |
CAH |
CAJ |
CBA |
359.5 |
0.0 |
| CAL |
CAH |
CAJ |
HAJ |
179.5 |
180.0 |
| CBC |
CAL |
CAH |
HAL |
180.0 |
179.9 |
| CAH |
CAL |
CBC |
NAP |
179.9 |
180.0 |
| CAH |
CAL |
CBC |
CBD |
0.2 |
0.0 |
| CAJ |
CAH |
HAH |
CAL |
180.0 |
180.3 |
| HAH |
CAH |
CAJ |
CBA |
179.5 |
179.7 |
| HAH |
CAH |
CAJ |
HAJ |
359.5 |
359.7 |
| HAH |
CAH |
CAL |
CBC |
180.0 |
180.3 |
| HAH |
CAH |
CAL |
HAL |
0.0 |
0.3 |
| CAK |
CAI |
SAV |
HAI |
180.0 |
179.8 |
| SAV |
CAI |
CAK |
CAZ |
0.2 |
0.2 |
| SAV |
CAI |
CAK |
HAK |
180.1 |
180.2 |
| SAV |
CAI |
CAK |
HAI |
180.0 |
180.2 |
| CAZ |
CAK |
CAI |
HAK |
180.0 |
180.0 |
| CAI |
CAK |
CAZ |
NAT |
180.3 |
180.0 |
| HAI |
CAI |
CAK |
CAZ |
180.2 |
180.0 |
| HAI |
CAI |
CAK |
HAK |
0.1 |
0.0 |
| OAF |
SBF |
CBA |
CAJ |
348.2 |
228.5 |
| CBA |
CAJ |
CAH |
CAL |
359.5 |
0.0 |
| CBA |
CAJ |
CAH |
HAH |
179.5 |
179.7 |
| CAH |
CAJ |
CBA |
HAJ |
180.0 |
180.0 |
| NAT |
SBF |
CBA |
CAJ |
111.0 |
115.0 |
| CBD |
CBA |
CAJ |
SBF |
181.3 |
180.0 |
| CAJ |
CBA |
CBD |
CBC |
359.2 |
0.0 |
| HAJ |
CAJ |
CAH |
CAL |
179.5 |
180.0 |
| HAJ |
CAJ |
CAH |
HAH |
359.5 |
359.7 |
| CAH |
CAJ |
HAJ |
CBA |
180.0 |
180.0 |
| HAJ |
CAJ |
CBA |
SBF |
359.6 |
0.0 |
| HAJ |
CAJ |
CBA |
CBD |
180.9 |
180.0 |
| CAZ |
CAK |
CAI |
HAI |
180.2 |
180.0 |
| CAI |
CAK |
CAZ |
HAK |
180.0 |
180.0 |
| CAK |
CAZ |
NAT |
SBF |
346.3 |
35.0 |
| CAK |
CAZ |
NAT |
HNAT |
106.3 |
214.9 |
| SAV |
CBB |
CAZ |
CAK |
360.0 |
0.4 |
| HAK |
CAK |
CAI |
HAI |
0.1 |
0.0 |
| CAI |
CAK |
HAK |
CAZ |
180.0 |
180.0 |
| HAK |
CAK |
CAZ |
NAT |
0.3 |
0.0 |
| CBC |
CAL |
CAH |
HAH |
180.0 |
180.3 |
| CAH |
CAL |
CBC |
HAL |
180.0 |
180.1 |
| CBA |
CBD |
CBC |
CAL |
0.2 |
360.0 |
| HAL |
CAL |
CAH |
HAH |
0.0 |
0.3 |
| CAH |
CAL |
HAL |
CBC |
180.0 |
179.9 |
| HAL |
CAL |
CBC |
NAP |
359.9 |
360.0 |
| HAL |
CAL |
CBC |
CBD |
180.1 |
180.0 |
| NAP |
CBC |
CAL |
HAL |
359.9 |
360.0 |
| CAL |
CBC |
NAP |
CBD |
180.2 |
180.0 |
| CAL |
CBC |
NAP |
SAU |
180.3 |
180.0 |
| CAJ |
CBA |
CBD |
NAQ |
179.7 |
179.9 |
| CAL |
CBC |
CBD |
NAQ |
179.8 |
180.1 |
| OAF |
SBF |
NAT |
CAZ |
52.3 |
311.5 |
| NAT |
CAZ |
CAK |
HAK |
0.3 |
0.0 |
| SBF |
NAT |
CAZ |
HNAT |
240.0 |
180.1 |
| CAZ |
NAT |
SBF |
CBA |
292.3 |
65.0 |
| OAF |
SBF |
NAT |
CBA |
120.1 |
246.5 |
| CAJ |
CBA |
SBF |
NAT |
111.0 |
115.0 |
| CAZ |
NAT |
SBF |
HNAT |
120.0 |
179.9 |
| CBD |
CBA |
SBF |
NAT |
289.8 |
295.0 |
| CAZ |
NAT |
HNAT |
SBF |
231.8 |
180.1 |
| HNAT |
NAT |
SBF |
CBA |
172.3 |
245.0 |
| CBB |
SAV |
CAI |
HAI |
179.8 |
180.2 |
| CBB |
CAY |
N |
HN |
359.0 |
0.0 |
| SAV |
CBB |
CAY |
CAZ |
180.7 |
179.7 |
| CBB |
CAZ |
CAK |
HAK |
179.9 |
179.6 |
| CBB |
CAZ |
NAT |
SBF |
166.7 |
215.5 |
| CBB |
CAZ |
NAT |
HNAT |
286.7 |
35.4 |
| SAV |
CBB |
CAZ |
CAY |
179.3 |
180.3 |
| OAF |
SBF |
CBA |
NAT |
237.2 |
113.5 |
| SBF |
CBA |
CAJ |
HAJ |
359.6 |
0.0 |
| CAJ |
CBA |
SBF |
CBD |
181.2 |
180.0 |
| CBA |
SBF |
NAT |
HNAT |
172.3 |
245.0 |
| SBF |
CBA |
CBD |
CBC |
180.4 |
180.0 |
| OAF |
SBF |
CBA |
CBD |
167.0 |
48.5 |
| CBD |
CBA |
CAJ |
HAJ |
180.9 |
180.0 |
| CAJ |
CBA |
CBD |
SBF |
178.8 |
180.0 |
| CAL |
CBC |
CBD |
CBA |
0.2 |
360.0 |
| NAT |
SBF |
CBA |
CBD |
289.8 |
295.0 |
| CBD |
CBC |
CAL |
HAL |
180.1 |
180.0 |
| CAL |
CBC |
CBD |
NAP |
179.8 |
180.0 |
| CBC |
CBD |
CBA |
SBF |
180.4 |
180.0 |
| CZ |
NH1 |
HNH1 |
HNHA |
180.0 |
180.1 |
| CZ |
NH1 |
HNHA |
HNH1 |
180.0 |
179.9 |