PDB Chemical Component 8CS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8CS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O4' C4' 1.249 1.222
C4' N3' 1.338 1.350
C4' C4A 1.494 1.399
C4A N5' 1.357 1.411
C4A C4B 1.476 1.388
N5' C6' 1.462 1.472
N5' HN5' 1.000 0.970
N3' C2' 1.343 1.361
N3' HN3' 1.000 0.970
C2' N2' 1.350 1.372
C2' N1' 1.352 1.316
N2' H2'1 1.000 0.969
N2' H2'2 1.000 0.971
N1' C4B 1.345 1.338
C4B N8' 1.339 1.386
N8' C7 1.445 1.467
N8' HN8' 1.000 0.969
C7 C6' 1.533 1.536
C7 O9' 1.429 1.428
C7 H7 1.100 1.090
C6' C7' 1.505 1.516
C6' H6' 1.100 1.090
C7' C8' 1.502 1.520
C7' O10 1.215 1.208
C8' O3 1.439 1.442
C8' C9' 1.528 1.531
C8' H8' 1.100 1.090
O3 P 1.618 1.624
O9' C9' 1.429 1.426
C9' C10 1.526 1.523
C9' H9' 1.100 1.090
C10 O1 1.425 1.439
C10 H101 1.100 1.090
C10 H102 1.100 1.090
O1 P 1.599 1.626
P O2 1.512 1.480
P O4 1.510 1.610
O4 HO4 0.950 0.967

Bond Angles for 8CS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O4' C4' N3' 118.7 120.7
O4' C4' C4A 122.8 120.7
C4A C4' N3' 118.6 118.6
C4' N3' C2' 122.3 120.1
C4' N3' HN3' 118.9 120.0
C4' C4A N5' 125.5 120.9
C4' C4A C4B 115.6 119.0
N5' C4A C4B 118.9 120.1
C4A N5' C6' 117.6 118.8
C4A N5' HN5' 106.9 120.6
C4A C4B N1' 119.5 119.6
C4A C4B N8' 120.6 119.7
C6' N5' HN5' 106.8 120.6
N5' C6' C7 111.0 108.2
N5' C6' C7' 114.3 108.2
N5' C6' H6' 104.1 110.6
C2' N3' HN3' 118.8 119.9
N3' C2' N2' 119.1 119.2
N3' C2' N1' 122.8 121.6
N2' C2' N1' 118.1 119.2
C2' N2' H2'1 110.0 120.1
C2' N2' H2'2 125.0 119.9
C2' N1' C4B 121.3 121.0
H2'1 N2' H2'2 125.0 120.0
N1' C4B N8' 120.0 120.6
C4B N8' C7 121.4 119.4
C4B N8' HN8' 105.7 120.3
C7 N8' HN8' 105.6 120.3
N8' C7 C6' 112.0 108.8
N8' C7 O9' 107.2 109.8
N8' C7 H7 109.6 109.5
C6' C7 O9' 110.3 109.6
C6' C7 H7 106.5 109.5
C7 C6' C7' 106.5 108.1
C7 C6' H6' 112.2 110.6
O9' C7 H7 111.3 109.7
C7 O9' C9' 112.8 114.3
C7' C6' H6' 108.8 111.1
C6' C7' C8' 119.5 117.0
C6' C7' O10 121.1 121.5
O10 C7' C8' 119.4 121.4
C7' C8' O3 111.4 107.3
C7' C8' C9' 107.0 107.4
C7' C8' H8' 110.4 110.8
O3 C8' C9' 111.2 109.1
O3 C8' H8' 106.2 110.7
C8' O3 P 120.7 119.5
C9' C8' H8' 110.6 111.3
C8' C9' O9' 110.0 109.5
C8' C9' C10 110.8 111.8
C8' C9' H9' 108.3 108.4
O3 P O1 100.2 105.6
O3 P O2 111.3 110.2
O3 P O4 106.3 110.2
O9' C9' C10 109.7 110.8
O9' C9' H9' 109.4 108.3
C10 C9' H9' 108.6 107.9
C9' C10 O1 110.0 109.6
C9' C10 H101 109.3 109.5
C9' C10 H102 109.1 109.5
O1 C10 H101 109.3 109.4
O1 C10 H102 109.2 109.4
C10 O1 P 118.3 118.7
H101 C10 H102 109.9 109.5
O1 P O2 107.3 110.2
O1 P O4 107.1 110.2
O2 P O4 122.3 110.3
P O4 HO4 109.5 114.0

Torsion Angles for 8CS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4A C4' O4' N3' 180.2 180.3
O4' C4' N3' C2' 180.1 180.3
O4' C4' N3' HN3' 0.2 0.2
O4' C4' C4A N5' 359.8 0.2
O4' C4' C4A C4B 180.2 180.0
O4' C4' N3' C4A 180.2 180.2
N3' C4' C4A N5' 180.0 180.5
N3' C4' C4A C4B 0.5 0.2
C2' N3' C4' HN3' 180.0 180.1
C4' N3' C2' N2' 180.0 179.7
C4' N3' C2' N1' 359.7 359.7
O4' C4' C4A N3' 179.8 179.8
C4A C4' N3' C2' 359.9 0.1
C4A C4' N3' HN3' 179.9 180.0
N5' C4A C4' C4B 179.5 180.2
C4' C4A N5' C6' 203.2 195.9
C4' C4A N5' HN5' 323.1 15.8
C4' C4A C4B N1' 359.5 359.7
C4' C4A C4B N8' 180.3 179.4
N5' C4A C4' N3' 180.0 180.5
C4' C4A N5' C4B 180.5 179.8
N5' C4A C4B N1' 179.9 179.5
N5' C4A C4B N8' 0.7 359.2
C6' N5' C4A HN5' 240.0 180.1
C4A N5' C6' C7 313.8 316.7
C4A N5' C6' C7' 193.3 199.8
C4A N5' C6' H6' 74.8 78.0
C4B C4A C4' N3' 0.5 0.2
C4' C4A C4B N5' 179.6 180.2
C4B C4A N5' C6' 22.7 16.2
C4B C4A N5' HN5' 142.7 196.0
C2' N1' C4B C4A 0.2 0.0
N1' C4B C4A N8' 179.2 180.3
C4A C4B N8' C7 2.7 17.1
C4A C4B N8' HN8' 122.7 197.1
C6' N5' C4A C4B 22.7 16.2
C4A N5' C6' HN5' 120.0 179.9
N8' C7 C6' N5' 46.9 55.0
N5' C6' C7 O9' 287.6 295.0
N5' C6' C7 H7 166.7 174.7
C7 C6' N5' C7' 120.5 116.9
C7 C6' N5' H6' 239.1 238.7
C7' C6' N5' H6' 118.6 121.9
N5' C6' C7' C8' 74.6 67.7
N5' C6' C7' O10 252.6 247.6
HN5' N5' C4A C4B 142.7 196.0
C4A N5' HN5' C6' 233.3 180.1
HN5' N5' C6' C7 193.8 136.8
HN5' N5' C6' C7' 73.3 20.0
HN5' N5' C6' H6' 314.7 258.1
C4' N3' C2' HN3' 180.0 179.9
N2' C2' N3' N1' 180.3 180.0
N3' C2' N2' H2'1 180.0 360.0
N3' C2' N2' H2'2 0.0 180.0
N3' C2' N1' C4B 0.2 0.3
C4' N3' HN3' C2' 180.0 180.1
HN3' N3' C2' N2' 0.0 359.8
HN3' N3' C2' N1' 179.7 179.7
N2' C2' N3' HN3' 0.0 359.8
N3' C2' N2' N1' 179.7 180.0
N2' C2' N1' C4B 179.9 180.2
H2'1 N2' C2' H2'2 180.0 180.0
C4A C4B N1' C2' 0.2 0.0
N1' C2' N3' HN3' 179.7 179.7
N3' C2' N1' N2' 180.3 180.0
N1' C2' N2' H2'1 0.3 180.0
N1' C2' N2' H2'2 180.3 0.0
C2' N1' C4B N8' 179.4 180.3
H2'1 N2' C2' N1' 0.3 180.0
C2' N2' H2'1 H2'2 180.0 180.0
H2'2 N2' C2' N1' 180.3 0.0
C2' N2' H2'2 H2'1 180.0 180.0
C4A C4B N1' N8' 180.8 179.7
N1' C4B N8' C7 183.5 196.9
N1' C4B N8' HN8' 303.5 16.8
C4A C4B N8' N1' 179.2 180.3
C7 N8' C4B HN8' 240.0 180.0
C4B N8' C7 C6' 333.2 315.2
C4B N8' C7 O9' 94.2 75.1
C4B N8' C7 H7 215.2 195.5
N5' C6' C7 N8' 46.9 55.0
C4B N8' C7 HN8' 120.0 180.0
C6' C7 N8' O9' 238.9 240.1
C6' C7 N8' H7 118.0 119.7
N8' C7 C6' C7' 171.8 172.0
N8' C7 C6' H6' 290.8 293.7
O9' C7 N8' H7 239.1 239.6
N8' C7 O9' C9' 172.3 176.6
C4B N8' HN8' C7 230.1 180.0
HN8' N8' C7 C6' 213.2 135.3
HN8' N8' C7 O9' 334.2 255.1
HN8' N8' C7 H7 95.2 15.6
C7 C6' N5' HN5' 193.8 136.8
N5' C6' C7 C7' 235.0 243.0
N5' C6' C7 H6' 116.0 121.3
C6' C7 N8' HN8' 213.2 135.3
N8' C7 C6' O9' 119.3 120.0
N8' C7 C6' H7 240.2 240.3
O9' C7 C6' H7 120.9 120.3
C6' C7 O9' C9' 294.5 296.0
C7' C6' C7 H6' 241.0 238.2
C7 C6' C7' C8' 311.6 310.7
C7 C6' C7' O10 129.7 130.7
O9' C7 N8' HN8' 334.2 255.1
N8' C7 O9' C6' 237.9 240.6
N8' C7 O9' H7 119.8 120.3
C6' C7 O9' H7 242.0 239.8
O9' C7 C6' C7' 52.5 52.0
O9' C7 C6' H6' 171.5 173.7
C8' C9' O9' C7 65.3 65.3
C7 O9' C9' C10 187.4 189.0
C7 O9' C9' H9' 306.5 307.2
H7 C7 N8' HN8' 95.2 15.6
N8' C7 H7 C6' 121.3 119.3
N8' C7 H7 O9' 241.6 239.5
C6' C7 H7 O9' 120.2 120.3
H7 C7 C6' C7' 291.6 291.6
H7 C7 C6' H6' 50.6 53.4
H7 C7 O9' C9' 52.5 56.2
C7' C6' N5' HN5' 73.3 20.0
N5' C6' C7' C7 123.0 116.9
N5' C6' C7' H6' 244.1 238.4
C7' C6' C7 O9' 52.5 52.0
C7' C6' C7 H7 291.6 291.6
C7 C6' C7' H6' 121.2 121.5
O10 C7' C6' C8' 178.0 180.0
C6' C7' C8' O3 286.8 292.9
C6' C7' C8' C9' 48.5 50.1
C6' C7' C8' H8' 169.0 171.9
H6' C6' N5' HN5' 314.7 258.1
N5' C6' H6' C7 239.9 240.2
N5' C6' H6' C7' 122.2 120.2
H6' C6' C7 O9' 171.5 173.7
H6' C6' C7 H7 50.6 53.4
C7 C6' H6' C7' 242.4 240.0
H6' C6' C7' C8' 190.5 189.3
H6' C6' C7' O10 8.5 9.2
C8' C7' C6' H6' 190.5 189.3
C6' C7' C8' O10 178.1 180.0
O3 C8' C7' C9' 238.3 242.8
O3 C8' C7' H8' 117.8 121.0
C7' C8' O3 P 171.1 167.6
C9' C8' C7' H8' 239.5 238.2
C7' C8' C9' O9' 307.5 306.1
C7' C8' C9' C10 186.0 183.0
C7' C8' C9' H9' 67.0 64.1
O10 C7' C6' H6' 8.5 9.2
C6' C7' O10 C8' 182.0 180.0
O10 C7' C8' O3 108.8 112.9
O10 C7' C8' C9' 230.5 230.1
O10 C7' C8' H8' 351.0 351.9
C7' C8' O3 C9' 119.3 116.1
C7' C8' O3 H8' 239.7 238.9
C9' C8' O3 H8' 120.4 122.9
O3 C8' C9' O9' 69.3 62.2
O3 C8' C9' C10 307.8 299.0
O3 C8' C9' H9' 188.8 180.2
C8' O3 P O1 312.9 320.7
C8' O3 P O2 199.7 201.7
C8' O3 P O4 64.3 79.7
C7 O9' C9' C8' 65.3 65.3
C7' C8' C9' O3 238.2 244.0
C7' C8' C9' H8' 120.4 121.5
O3 C8' C9' H8' 242.2 237.5
C9' C8' O3 P 51.8 51.6
O9' C9' C8' C10 121.5 123.2
O9' C9' C8' H9' 240.5 242.0
C10 C9' C8' H9' 119.0 118.8
C8' C9' C10 O1 57.2 61.8
C8' C9' C10 H101 177.2 181.9
C8' C9' C10 H102 297.5 301.9
C7' C8' H8' O3 120.9 119.0
C7' C8' H8' C9' 241.7 240.6
O3 C8' H8' C9' 120.8 121.6
H8' C8' O3 P 291.4 288.7
H8' C8' C9' O9' 187.1 184.7
H8' C8' C9' C10 65.6 61.5
H8' C8' C9' H9' 306.6 302.7
P O3 C8' C9' 51.8 51.6
P O3 C8' H8' 291.4 288.7
C10 O1 P O3 51.8 39.5
O1 P O3 O2 113.2 119.0
O1 P O3 O4 248.7 241.0
O2 P O3 O4 135.4 122.0
O3 P O4 HO4 299.4 180.0
C9' O9' C7 H7 52.5 56.2
O9' C9' C8' H8' 187.1 184.7
C8' C9' O9' C10 237.9 236.2
C8' C9' O9' H9' 118.8 118.0
C10 C9' O9' H9' 240.9 241.8
O9' C9' C10 O1 295.6 299.4
O9' C9' C10 H101 55.6 59.4
O9' C9' C10 H102 175.8 179.4
C10 C9' C8' H8' 65.6 61.5
C8' C9' C10 O9' 121.7 122.5
C8' C9' C10 H9' 241.2 240.9
O9' C9' C10 H9' 119.5 118.4
O1 C10 C9' H101 240.0 240.0
O1 C10 C9' H102 119.8 120.0
C9' C10 O1 P 298.2 307.4
H101 C10 C9' H102 239.8 240.0
H9' C9' C8' H8' 306.6 302.7
C8' C9' H9' O9' 240.1 241.2
C8' C9' H9' C10 120.4 121.2
O9' C9' H9' C10 240.3 240.0
H9' C9' C10 O1 176.1 180.9
H9' C9' C10 H101 296.1 301.0
H9' C9' C10 H102 56.3 61.0
O3 P O1 C10 51.8 39.5
O1 C10 C9' H9' 176.1 180.9
C9' C10 O1 H101 120.0 120.1
C9' C10 O1 H102 240.3 240.0
H101 C10 O1 H102 120.2 119.9
C10 O1 P O2 168.1 158.5
C10 O1 P O4 301.1 280.4
H101 C10 C9' H9' 296.1 301.0
C9' C10 H101 O1 239.5 239.9
C9' C10 H101 H102 119.8 120.0
O1 C10 H101 H102 240.2 240.1
H101 C10 O1 P 178.2 187.3
H102 C10 C9' H9' 56.3 61.0
C9' C10 H102 O1 120.3 120.1
C9' C10 H102 H101 240.1 240.0
O1 C10 H102 H101 119.8 119.9
H102 C10 O1 P 57.9 67.4
O3 P O1 O2 243.8 241.0
O3 P O1 O4 110.7 119.1
P O1 C10 H101 178.2 187.3
P O1 C10 H102 57.9 67.4
O2 P O1 O4 226.9 238.0
O1 P O4 HO4 45.8 296.2
O3 P O2 O1 108.6 116.1
O3 P O2 O4 232.9 238.1
O1 P O2 O4 124.2 121.9
O2 P O4 HO4 170.1 58.1
O3 P O4 O1 253.6 243.8
O3 P O4 O2 129.3 121.9
O1 P O4 O2 235.7 238.1