PDB Chemical Component 8CP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8CP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.229 |
1.220 |
| C2 |
N3 |
1.331 |
1.331 |
| C2 |
N1 |
1.407 |
1.346 |
| N3 |
C4 |
1.336 |
1.326 |
| C2' |
C1' |
1.505 |
1.545 |
| C2' |
C3' |
1.527 |
1.545 |
| C1' |
N1 |
1.446 |
1.465 |
| C1' |
O4' |
1.426 |
1.445 |
| N1 |
C6 |
1.338 |
1.362 |
| O3' |
C3' |
1.428 |
1.429 |
| C4 |
N4 |
1.342 |
1.376 |
| C4 |
C5 |
1.422 |
1.410 |
| C3' |
C4' |
1.529 |
1.544 |
| O4' |
C4' |
1.474 |
1.445 |
| C6 |
C5 |
1.369 |
1.354 |
| C4' |
C5' |
1.519 |
1.530 |
| O2B |
PB |
1.515 |
1.480 |
| C5' |
O5' |
1.397 |
1.429 |
| O5' |
PA |
1.631 |
1.611 |
| PB |
O3A |
1.582 |
1.610 |
| PB |
O1B |
1.455 |
1.610 |
| PB |
N3B |
1.676 |
1.683 |
| O3A |
PA |
1.629 |
1.610 |
| N3B |
PG |
1.680 |
1.684 |
| PA |
O1A |
1.507 |
1.480 |
| PA |
O2A |
1.513 |
1.610 |
| PG |
O1G |
1.451 |
1.480 |
| PG |
O3G |
1.535 |
1.610 |
| PG |
O2G |
1.549 |
1.610 |
| C5 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.080 |
| N4 |
H3 |
1.000 |
0.971 |
| N4 |
H4 |
1.000 |
0.969 |
| C1' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| C2' |
H7 |
1.101 |
1.090 |
| C3' |
H8 |
1.101 |
1.090 |
| C4' |
H9 |
1.100 |
1.090 |
| O3' |
H10 |
0.950 |
0.966 |
| C5' |
H11 |
1.100 |
1.089 |
| C5' |
H12 |
1.100 |
1.090 |
| O2A |
H13 |
0.950 |
0.966 |
| O1B |
H14 |
0.950 |
0.967 |
| O2G |
H15 |
0.950 |
0.968 |
| O3G |
H16 |
0.950 |
0.966 |
| N3B |
H17 |
1.001 |
1.009 |
Bond Angles for 8CP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N3 |
C4 |
121.3 |
120.7 |
| C2 |
N1 |
C6 |
119.9 |
120.3 |
| N3 |
C4 |
N4 |
121.0 |
120.2 |
| N3 |
C4 |
C5 |
120.7 |
119.6 |
| C2' |
C1' |
O4' |
103.5 |
104.8 |
| C2' |
C1' |
H5 |
110.3 |
110.5 |
| C2' |
C3' |
C4' |
99.5 |
104.1 |
| C3' |
C2' |
H6 |
110.2 |
110.5 |
| C3' |
C2' |
H7 |
110.2 |
110.5 |
| C2' |
C3' |
H8 |
110.6 |
110.5 |
| C1' |
O4' |
C4' |
112.1 |
105.2 |
| O4' |
C1' |
H5 |
111.5 |
110.4 |
| N1 |
C6 |
C5 |
121.3 |
119.3 |
| N1 |
C6 |
H2 |
119.4 |
120.3 |
| O3' |
C3' |
H8 |
112.1 |
110.6 |
| C5 |
C4 |
N4 |
118.4 |
120.2 |
| C4 |
N4 |
H3 |
120.0 |
120.0 |
| C4 |
N4 |
H4 |
120.0 |
120.0 |
| C4 |
C5 |
H1 |
121.4 |
120.5 |
| C3' |
C4' |
C5' |
114.9 |
110.4 |
| C4' |
C3' |
H8 |
110.6 |
110.6 |
| C3' |
C4' |
H9 |
108.7 |
110.4 |
| O4' |
C4' |
C5' |
111.8 |
110.4 |
| O4' |
C4' |
H9 |
109.4 |
110.5 |
| C6 |
C5 |
H1 |
121.4 |
120.5 |
| C4' |
C5' |
O5' |
107.6 |
109.5 |
| C5' |
C4' |
H9 |
108.8 |
110.3 |
| C4' |
C5' |
H11 |
110.0 |
109.5 |
| C4' |
C5' |
H12 |
109.9 |
109.4 |
| O2B |
PB |
N3B |
106.3 |
109.5 |
| C5' |
O5' |
PA |
120.5 |
123.0 |
| O5' |
C5' |
H11 |
109.9 |
109.5 |
| O5' |
C5' |
H12 |
109.9 |
109.5 |
| O5' |
PA |
O1A |
109.5 |
109.5 |
| O5' |
PA |
O2A |
109.1 |
109.4 |
| O1B |
PB |
N3B |
109.3 |
109.5 |
| PB |
O1B |
H14 |
109.5 |
114.0 |
| PB |
N3B |
PG |
121.9 |
111.0 |
| PB |
N3B |
H17 |
106.3 |
111.0 |
| O1A |
PA |
O2A |
112.6 |
109.5 |
| PA |
O2A |
H13 |
109.5 |
114.1 |
| O1G |
PG |
O3G |
112.3 |
109.5 |
| O1G |
PG |
O2G |
109.8 |
109.5 |
| O2G |
PG |
O3G |
109.7 |
109.5 |
| PG |
O3G |
H16 |
109.5 |
114.0 |
| PG |
O2G |
H15 |
109.5 |
113.9 |
| H3 |
N4 |
H4 |
120.0 |
120.0 |
| H6 |
C2' |
H7 |
109.5 |
110.6 |
| H11 |
C5' |
H12 |
109.5 |
109.5 |
Torsion Angles for 8CP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N1 |
C6 |
356.9 |
0.0 |
| C2 |
N3 |
C4 |
N4 |
179.4 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
358.7 |
0.0 |
| C2 |
N1 |
C6 |
C5 |
5.6 |
0.0 |
| C2 |
N1 |
C6 |
H2 |
185.6 |
180.0 |
| C5 |
C4 |
N3 |
N4 |
179.3 |
180.0 |
| N3 |
C4 |
N4 |
H3 |
360.0 |
359.9 |
| N3 |
C4 |
N4 |
H4 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
H1 |
183.6 |
180.0 |
| C2' |
C1' |
O4' |
C4' |
359.5 |
319.5 |
| O4' |
C1' |
C2' |
H5 |
119.3 |
118.9 |
| C3' |
C2' |
C1' |
O4' |
336.2 |
24.0 |
| C3' |
C2' |
C1' |
H5 |
216.9 |
265.1 |
| O3' |
C3' |
C2' |
H8 |
235.4 |
237.3 |
| C2' |
C3' |
C4' |
C5' |
202.1 |
217.2 |
| C4' |
C3' |
C2' |
H8 |
116.4 |
118.7 |
| C2' |
C3' |
C4' |
H9 |
80.0 |
95.0 |
| H6 |
C2' |
C3' |
H7 |
120.9 |
122.8 |
| C1' |
N1 |
C6 |
H2 |
357.9 |
0.3 |
| C2' |
C1' |
O4' |
H5 |
241.5 |
241.0 |
| C1' |
O4' |
C4' |
C5' |
148.1 |
159.4 |
| C1' |
O4' |
C4' |
H9 |
268.6 |
281.6 |
| N1 |
C6 |
C5 |
H1 |
174.3 |
180.0 |
| O3' |
C3' |
C2' |
H6 |
36.8 |
0.1 |
| O3' |
C3' |
C2' |
H7 |
275.9 |
237.3 |
| C2' |
C3' |
O3' |
H8 |
123.8 |
122.6 |
| O3' |
C3' |
C4' |
C5' |
85.2 |
98.6 |
| C4' |
C3' |
O3' |
H8 |
234.2 |
237.3 |
| O3' |
C3' |
C4' |
H9 |
323.0 |
336.4 |
| N3 |
C4 |
N4 |
C5 |
179.3 |
180.0 |
| N4 |
C4 |
C5 |
H1 |
2.9 |
360.0 |
| H3 |
N4 |
C4 |
H4 |
180.0 |
179.9 |
| N3 |
C4 |
C5 |
N4 |
180.7 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
354.2 |
359.9 |
| C5 |
C4 |
N4 |
H3 |
180.7 |
179.9 |
| C5 |
C4 |
N4 |
H4 |
0.7 |
0.0 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H6 |
277.8 |
241.4 |
| C4' |
C3' |
C2' |
H7 |
156.9 |
118.7 |
| C2' |
C3' |
C4' |
H8 |
243.6 |
241.3 |
| C1' |
O4' |
C4' |
C3' |
24.1 |
40.6 |
| O3' |
C3' |
C4' |
H8 |
126.7 |
122.7 |
| O4' |
C4' |
C3' |
C5' |
121.9 |
118.8 |
| O4' |
C4' |
C3' |
H9 |
244.0 |
241.0 |
| C3' |
C4' |
C5' |
O5' |
57.7 |
185.0 |
| C5' |
C4' |
C3' |
H9 |
122.1 |
122.2 |
| C3' |
C4' |
C5' |
H11 |
177.4 |
305.0 |
| C3' |
C4' |
C5' |
H12 |
298.0 |
65.0 |
| C4' |
O4' |
C1' |
H5 |
118.0 |
78.4 |
| C3' |
C4' |
O4' |
C5' |
236.0 |
241.2 |
| O4' |
C4' |
C3' |
H8 |
80.4 |
94.6 |
| C3' |
C4' |
O4' |
H9 |
115.5 |
118.9 |
| O4' |
C4' |
C5' |
O5' |
300.7 |
69.6 |
| C5' |
C4' |
O4' |
H9 |
239.4 |
237.7 |
| O4' |
C4' |
C5' |
H11 |
60.4 |
189.6 |
| O4' |
C4' |
C5' |
H12 |
181.0 |
309.6 |
| N1 |
C6 |
C5 |
H2 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
N4 |
182.9 |
180.0 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
180.0 |
| C5' |
C4' |
C3' |
H8 |
318.5 |
335.8 |
| C3' |
C4' |
C5' |
H9 |
237.9 |
237.7 |
| O4' |
C4' |
C5' |
H9 |
120.9 |
122.4 |
| C4' |
C5' |
O5' |
PA |
225.0 |
180.0 |
| O5' |
C5' |
C4' |
H11 |
240.3 |
240.0 |
| O5' |
C5' |
C4' |
H12 |
119.7 |
120.0 |
| H11 |
C5' |
C4' |
H12 |
239.4 |
240.0 |
| O1B |
PB |
O2B |
N3B |
242.0 |
240.0 |
| O2B |
PB |
O1B |
H14 |
360.0 |
180.0 |
| O2B |
PB |
N3B |
PG |
198.6 |
300.0 |
| O2B |
PB |
N3B |
H17 |
320.4 |
63.9 |
| O5' |
C5' |
C4' |
H9 |
179.8 |
307.2 |
| C4' |
C5' |
O5' |
H11 |
119.7 |
120.0 |
| C4' |
C5' |
O5' |
H12 |
240.3 |
240.0 |
| C5' |
O5' |
PA |
O1A |
190.2 |
305.0 |
| C5' |
O5' |
PA |
O2A |
313.8 |
65.0 |
| H11 |
C5' |
O5' |
H12 |
120.6 |
120.0 |
| PA |
O5' |
C5' |
H11 |
105.3 |
60.0 |
| PA |
O5' |
C5' |
H12 |
344.7 |
300.0 |
| O1A |
PA |
O5' |
O2A |
236.4 |
240.0 |
| O5' |
PA |
O2A |
H13 |
238.3 |
60.0 |
| O2B |
PB |
O1B |
N3B |
116.1 |
120.0 |
| O1B |
PB |
N3B |
PG |
316.7 |
60.0 |
| O1B |
PB |
N3B |
H17 |
78.4 |
183.9 |
| N3B |
PB |
O1B |
H14 |
243.9 |
60.0 |
| O3A |
PA |
O2A |
H13 |
122.4 |
300.0 |
| PB |
N3B |
PG |
H17 |
121.7 |
124.0 |
| N3B |
PG |
O3G |
H16 |
119.0 |
60.0 |
| N3B |
PG |
O2G |
H15 |
241.6 |
180.0 |
| O5' |
PA |
O1A |
O2A |
121.6 |
120.0 |
| O1A |
PA |
O2A |
H13 |
0.0 |
180.0 |
| O5' |
PA |
O2A |
O1A |
238.2 |
240.0 |
| PB |
N3B |
PG |
O1G |
114.6 |
300.0 |
| O2G |
PG |
O1G |
O3G |
122.3 |
240.0 |
| O1G |
PG |
O3G |
H16 |
360.0 |
180.0 |
| O1G |
PG |
O2G |
H15 |
0.0 |
60.0 |
| PB |
N3B |
PG |
O3G |
352.9 |
60.0 |
| O1G |
PG |
O3G |
O2G |
122.4 |
240.0 |
| O3G |
PG |
O2G |
H15 |
123.9 |
300.0 |
| PB |
N3B |
PG |
O2G |
234.0 |
180.0 |
| O1G |
PG |
O2G |
O3G |
236.1 |
120.0 |
| O2G |
PG |
O3G |
H16 |
237.6 |
300.0 |
| H1 |
C5 |
C4 |
N4 |
2.9 |
360.0 |
| N1 |
C6 |
H2 |
C5 |
180.0 |
180.0 |
| H2 |
C6 |
C5 |
H1 |
354.2 |
360.0 |
| C4 |
N4 |
H3 |
H4 |
180.0 |
180.1 |
| C4 |
N4 |
H4 |
H3 |
180.0 |
179.9 |
| C2' |
C1' |
H5 |
O4' |
114.4 |
115.4 |
| H5 |
C1' |
O4' |
C4' |
118.0 |
78.4 |
| H6 |
C2' |
C1' |
O4' |
95.8 |
142.6 |
| H6 |
C2' |
C1' |
H5 |
336.5 |
23.7 |
| H6 |
C2' |
C3' |
C4' |
277.8 |
241.4 |
| C3' |
C2' |
H6 |
H7 |
238.7 |
237.3 |
| H6 |
C2' |
C3' |
H8 |
161.4 |
122.7 |
| H7 |
C2' |
C1' |
O4' |
216.7 |
265.3 |
| H7 |
C2' |
C1' |
H5 |
97.4 |
146.4 |
| H7 |
C2' |
C3' |
C4' |
156.9 |
118.7 |
| C3' |
C2' |
H7 |
H6 |
121.3 |
122.7 |
| H7 |
C2' |
C3' |
H8 |
40.5 |
359.9 |
| C2' |
C3' |
H8 |
C4' |
109.3 |
114.7 |
| H8 |
C3' |
C2' |
H6 |
161.4 |
122.7 |
| H8 |
C3' |
C2' |
H7 |
40.5 |
359.9 |
| H8 |
C3' |
C4' |
C5' |
318.5 |
335.8 |
| H8 |
C3' |
C4' |
H9 |
196.4 |
213.6 |
| C3' |
C4' |
H9 |
C5' |
125.8 |
122.2 |
| H9 |
C4' |
C3' |
H8 |
196.4 |
213.6 |
| O4' |
C4' |
H9 |
C5' |
237.6 |
237.7 |
| H9 |
C4' |
C5' |
O5' |
179.8 |
307.2 |
| H9 |
C4' |
C5' |
H11 |
299.5 |
67.2 |
| H9 |
C4' |
C5' |
H12 |
60.1 |
187.3 |
| H10 |
O3' |
C3' |
H8 |
22.7 |
298.8 |
| C4' |
C5' |
H11 |
O5' |
241.7 |
240.0 |
| H11 |
C5' |
C4' |
H9 |
299.5 |
67.2 |
| C4' |
C5' |
H11 |
H12 |
120.9 |
120.0 |
| H11 |
C5' |
O5' |
PA |
105.3 |
60.0 |
| O5' |
C5' |
H11 |
H12 |
239.1 |
240.0 |
| C4' |
C5' |
H12 |
O5' |
118.3 |
120.0 |
| H12 |
C5' |
C4' |
H9 |
60.1 |
187.3 |
| C4' |
C5' |
H12 |
H11 |
239.1 |
240.0 |
| H12 |
C5' |
O5' |
PA |
344.7 |
300.0 |
| O5' |
C5' |
H12 |
H11 |
120.9 |
120.0 |
| H14 |
O1B |
PB |
N3B |
243.9 |
60.0 |
| H15 |
O2G |
PG |
O3G |
123.9 |
300.0 |
| PB |
N3B |
H17 |
PG |
228.8 |
236.0 |