Atom Nomenclature for 8BG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8BG

Atom Name (V3) Atom Name (V2)
C15 C1
C17 C2
C20 C3
C21 C4
C22 C5
C24 C6
C28 C7
N01 N1
C02 C8
C03 C9
C04 C10
C05 C11
N06 N2
C07 C12
C08 C13
C09 C14
S10 S1
C11 C15
O12 O1
O13 O2
C14 C16
C16 C17
C18 C18
C19 C19
C23 C20
C25 C21
N26 N3
O27 O3
C29 C22
C30 C23
O31 O4
O32 O5
C33 C24
C34 C25
O35 O6
C36 C26
C37 C27
O38 O7
C39 C28
C40 C29
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39