PDB Chemical Component 8BA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8BA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
BR |
C8 |
1.963 |
1.892 |
C4' |
O4' |
1.404 |
1.444 |
C4' |
C5' |
1.504 |
1.530 |
C4' |
C3' |
1.498 |
1.550 |
O4' |
C1' |
1.398 |
1.438 |
C5' |
O5' |
1.414 |
1.429 |
C1' |
C2' |
1.513 |
1.540 |
C1' |
N9 |
1.458 |
1.465 |
O3' |
C3' |
1.408 |
1.429 |
OP2 |
P |
1.436 |
1.480 |
C3' |
C2' |
1.489 |
1.548 |
C8 |
N9 |
1.300 |
1.364 |
C8 |
N7 |
1.295 |
1.303 |
N9 |
C4 |
1.302 |
1.373 |
O5' |
P |
1.549 |
1.610 |
P |
OP1 |
1.417 |
1.480 |
N7 |
C5 |
1.295 |
1.355 |
C4 |
C5 |
1.446 |
1.405 |
C4 |
N3 |
1.319 |
1.329 |
C5 |
C6 |
1.440 |
1.405 |
N3 |
C2 |
1.326 |
1.316 |
C6 |
N6 |
1.219 |
1.384 |
C6 |
N1 |
1.306 |
1.329 |
C2 |
N1 |
1.332 |
1.321 |
P |
O1 |
1.556 |
1.610 |
C5' |
H1 |
1.100 |
1.090 |
C5' |
H2 |
1.100 |
1.090 |
C4' |
H3 |
1.100 |
1.090 |
C3' |
H4 |
1.100 |
1.090 |
O3' |
H5 |
0.951 |
0.966 |
C2' |
H6 |
1.100 |
1.090 |
C2' |
H7 |
1.100 |
1.090 |
C1' |
H8 |
1.100 |
1.090 |
C2 |
H9 |
1.080 |
1.080 |
N6 |
H11 |
1.000 |
0.970 |
N6 |
H12 |
0.999 |
0.970 |
O1 |
H13 |
0.950 |
0.967 |
Bond Angles for 8BA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O4' |
C4' |
C3' |
105.4 |
103.5 |
C4' |
O4' |
C1' |
108.6 |
107.0 |
O4' |
C4' |
H3 |
109.1 |
110.6 |
C4' |
C5' |
H1 |
108.1 |
109.4 |
C4' |
C5' |
H2 |
108.1 |
109.5 |
C4' |
C3' |
C2' |
103.2 |
102.1 |
C3' |
C4' |
H3 |
107.9 |
110.7 |
C4' |
C3' |
H4 |
110.2 |
110.9 |
O4' |
C1' |
C2' |
106.8 |
107.3 |
O4' |
C1' |
N9 |
110.4 |
109.8 |
O4' |
C1' |
H8 |
110.7 |
109.9 |
C1' |
C2' |
H6 |
110.5 |
110.5 |
C1' |
C2' |
H7 |
110.5 |
110.6 |
C1' |
N9 |
C4 |
128.5 |
126.3 |
N9 |
C1' |
H8 |
109.8 |
109.9 |
O3' |
C3' |
C2' |
109.5 |
110.9 |
O3' |
C3' |
H4 |
111.5 |
110.8 |
OP2 |
P |
O1 |
107.4 |
109.5 |
C2' |
C3' |
H4 |
110.3 |
110.9 |
C3' |
C2' |
H6 |
110.6 |
110.5 |
C3' |
C2' |
H7 |
110.6 |
110.5 |
C8 |
N9 |
C4 |
104.1 |
107.4 |
C8 |
N7 |
C5 |
102.2 |
109.4 |
N9 |
C4 |
C5 |
105.8 |
106.0 |
N9 |
C4 |
N3 |
135.3 |
134.9 |
O5' |
P |
OP1 |
108.7 |
109.5 |
O5' |
P |
O1 |
103.6 |
109.4 |
OP1 |
P |
O1 |
109.2 |
109.4 |
N7 |
C5 |
C6 |
132.5 |
134.7 |
C5 |
C6 |
N6 |
118.8 |
120.8 |
C5 |
C6 |
N1 |
117.7 |
118.5 |
N3 |
C2 |
H9 |
117.8 |
118.8 |
N1 |
C6 |
N6 |
123.6 |
120.8 |
C6 |
N6 |
H11 |
109.5 |
120.0 |
C6 |
N6 |
H12 |
109.5 |
120.0 |
P |
O1 |
H13 |
109.5 |
114.0 |
H1 |
C5' |
H2 |
109.4 |
109.5 |
H6 |
C2' |
H7 |
109.5 |
110.5 |
H11 |
N6 |
H12 |
109.4 |
120.0 |
Torsion Angles for 8BA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O4' |
C4' |
C5' |
H1 |
45.7 |
306.5 |
O4' |
C4' |
C5' |
H2 |
164.1 |
186.5 |
O4' |
C4' |
C3' |
C2' |
328.5 |
323.0 |
C3' |
C4' |
O4' |
H3 |
115.6 |
118.6 |
O4' |
C4' |
C3' |
H4 |
86.3 |
81.2 |
C4' |
O4' |
C1' |
C2' |
339.4 |
333.5 |
C4' |
O4' |
C1' |
N9 |
219.9 |
214.0 |
C4' |
O4' |
C1' |
H8 |
98.1 |
93.0 |
H1 |
C5' |
C4' |
H2 |
241.6 |
120.0 |
C3' |
C4' |
O4' |
C1' |
33.0 |
40.0 |
O4' |
C4' |
C3' |
H3 |
243.5 |
241.5 |
C3' |
C4' |
C5' |
H1 |
165.6 |
60.5 |
C3' |
C4' |
C5' |
H2 |
283.9 |
300.5 |
O3' |
C3' |
C4' |
C2' |
242.4 |
241.8 |
O3' |
C3' |
C4' |
H4 |
124.7 |
123.5 |
C2' |
C3' |
C4' |
H4 |
242.2 |
241.8 |
C4' |
C3' |
C2' |
H6 |
259.4 |
139.5 |
C4' |
C3' |
C2' |
H7 |
138.0 |
262.1 |
C1' |
O4' |
C4' |
C3' |
33.0 |
40.0 |
C1' |
O4' |
C4' |
H3 |
277.4 |
281.4 |
O4' |
C1' |
C2' |
H6 |
119.3 |
243.4 |
O4' |
C1' |
C2' |
H7 |
240.7 |
120.7 |
O4' |
C1' |
N9 |
C4 |
80.6 |
223.6 |
N9 |
C1' |
O4' |
H8 |
121.8 |
121.1 |
C5' |
O5' |
P |
OP1 |
168.6 |
284.9 |
C5' |
O5' |
P |
O1 |
284.6 |
165.0 |
O4' |
C1' |
C2' |
N9 |
240.2 |
240.6 |
O4' |
C1' |
C2' |
H8 |
119.7 |
119.4 |
C1' |
C2' |
C3' |
H4 |
261.1 |
262.7 |
C3' |
C2' |
C1' |
H6 |
240.7 |
118.6 |
C3' |
C2' |
C1' |
H7 |
119.3 |
241.3 |
H6 |
C2' |
C1' |
H7 |
238.6 |
122.6 |
O4' |
C1' |
N9 |
C2' |
117.6 |
117.9 |
O4' |
C1' |
N9 |
H8 |
237.7 |
239.0 |
N9 |
C1' |
C2' |
H6 |
239.1 |
2.8 |
N9 |
C1' |
C2' |
H7 |
0.5 |
240.2 |
C8 |
N9 |
C1' |
C4 |
179.6 |
180.4 |
C1' |
N9 |
C4 |
C5 |
179.6 |
179.9 |
C1' |
N9 |
C4 |
N3 |
358.2 |
0.8 |
C4' |
C3' |
O3' |
C2' |
113.7 |
112.8 |
O3' |
C3' |
C4' |
H3 |
327.4 |
323.3 |
C4' |
C3' |
O3' |
H4 |
236.1 |
236.4 |
C2' |
C3' |
O3' |
H4 |
122.4 |
123.6 |
O3' |
C3' |
C2' |
H6 |
18.7 |
257.8 |
O3' |
C3' |
C2' |
H7 |
257.3 |
20.3 |
O5' |
P |
OP2 |
O1 |
250.5 |
120.0 |
OP1 |
P |
OP2 |
O1 |
127.2 |
240.0 |
OP2 |
P |
O1 |
H13 |
0.0 |
300.0 |
C2' |
C3' |
C4' |
H3 |
85.0 |
81.5 |
C4' |
C3' |
C2' |
H4 |
117.7 |
118.2 |
O4' |
C1' |
C2' |
C3' |
360.0 |
2.0 |
C1' |
C2' |
C3' |
H6 |
119.3 |
241.3 |
C1' |
C2' |
C3' |
H7 |
240.7 |
118.8 |
O3' |
C3' |
C2' |
H4 |
236.9 |
236.4 |
H6 |
C2' |
C3' |
H7 |
121.4 |
237.4 |
C1' |
N9 |
C8 |
C4 |
180.3 |
179.7 |
C8 |
N9 |
C1' |
H8 |
22.5 |
164.9 |
C8 |
N9 |
C4 |
C5 |
359.9 |
359.6 |
C8 |
N9 |
C4 |
N3 |
178.5 |
180.5 |
N7 |
C8 |
N9 |
C4 |
0.4 |
0.3 |
C8 |
N7 |
C5 |
C6 |
180.6 |
180.0 |
C4 |
N9 |
C1' |
H8 |
202.9 |
344.6 |
OP2 |
P |
O5' |
O1 |
112.3 |
240.0 |
OP1 |
P |
O5' |
O1 |
244.0 |
120.0 |
O5' |
P |
O1 |
H13 |
109.9 |
180.0 |
OP2 |
P |
OP1 |
O1 |
233.6 |
120.0 |
O5' |
P |
OP1 |
O1 |
112.4 |
240.0 |
OP1 |
P |
O1 |
H13 |
225.6 |
60.0 |
N9 |
C4 |
C5 |
N7 |
359.8 |
0.4 |
N7 |
C5 |
C6 |
N6 |
359.7 |
0.0 |
N7 |
C5 |
C6 |
N1 |
179.0 |
179.9 |
N9 |
C4 |
C5 |
N3 |
178.9 |
180.8 |
C4 |
C5 |
C6 |
N6 |
179.9 |
180.3 |
N9 |
C4 |
N3 |
C5 |
181.5 |
179.0 |
C4 |
N3 |
C2 |
H9 |
179.6 |
179.7 |
N9 |
C4 |
C5 |
C6 |
179.7 |
180.2 |
N1 |
C6 |
C5 |
N6 |
179.3 |
179.9 |
C5 |
C6 |
N6 |
H11 |
179.2 |
360.0 |
C5 |
C6 |
N6 |
H12 |
299.2 |
179.9 |
N9 |
C4 |
N3 |
C2 |
181.3 |
179.5 |
C5 |
C6 |
N6 |
N1 |
179.2 |
179.9 |
H11 |
N6 |
C6 |
H12 |
240.0 |
180.0 |
C5 |
C6 |
N1 |
N6 |
180.8 |
180.1 |
N1 |
C6 |
N6 |
H11 |
0.0 |
180.0 |
N1 |
C6 |
N6 |
H12 |
120.0 |
0.0 |
C2 |
N1 |
C6 |
N6 |
179.6 |
180.0 |
O5' |
P |
O1 |
OP1 |
244.3 |
120.0 |
C4' |
C5' |
H1 |
H2 |
117.5 |
240.0 |
C4' |
C5' |
H2 |
H1 |
242.5 |
120.0 |
O4' |
C4' |
H3 |
C3' |
114.0 |
114.1 |
H3 |
C4' |
O4' |
C1' |
277.4 |
281.4 |
H3 |
C4' |
C5' |
H1 |
286.1 |
183.6 |
H3 |
C4' |
C5' |
H2 |
44.5 |
63.6 |
H3 |
C4' |
C3' |
C2' |
85.0 |
81.5 |
H3 |
C4' |
C3' |
H4 |
202.8 |
199.7 |
C4' |
C3' |
H4 |
C2' |
246.7 |
247.3 |
H4 |
C3' |
C4' |
H3 |
202.8 |
199.7 |
O3' |
C3' |
H4 |
C2' |
121.9 |
123.6 |
H4 |
C3' |
C2' |
H6 |
141.8 |
21.3 |
H4 |
C3' |
C2' |
H7 |
20.4 |
143.9 |
H5 |
O3' |
C3' |
C2' |
66.3 |
67.2 |
H5 |
O3' |
C3' |
H4 |
303.9 |
303.6 |
C1' |
C2' |
H6 |
H7 |
122.0 |
237.3 |
H6 |
C2' |
C3' |
H4 |
141.8 |
21.3 |
C3' |
C2' |
H6 |
H7 |
238.0 |
122.6 |
C1' |
C2' |
H7 |
H6 |
238.0 |
122.7 |
H7 |
C2' |
C3' |
H4 |
20.4 |
143.9 |
C3' |
C2' |
H7 |
H6 |
122.0 |
237.4 |
O4' |
C1' |
H8 |
C2' |
242.7 |
242.1 |
O4' |
C1' |
H8 |
N9 |
122.2 |
121.0 |
H8 |
C1' |
C2' |
H6 |
359.6 |
123.9 |
H8 |
C1' |
C2' |
H7 |
120.9 |
1.3 |
H8 |
C1' |
N9 |
C4 |
202.9 |
344.6 |
C6 |
N6 |
H11 |
H12 |
120.0 |
180.0 |
C6 |
N6 |
H12 |
H11 |
240.0 |
180.0 |