PDB Chemical Component 8AN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8AN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3P |
P |
1.591 |
1.481 |
| O2P |
P |
1.475 |
1.610 |
| P |
O1P |
1.449 |
1.609 |
| P |
O5' |
1.574 |
1.610 |
| O1P |
HO1P |
0.950 |
0.967 |
| O2P |
HO2P |
0.950 |
0.966 |
| O5' |
C5' |
1.402 |
1.430 |
| C4' |
C5' |
1.453 |
1.530 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| O4' |
C4' |
1.403 |
1.444 |
| C4' |
C3' |
1.509 |
1.545 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C1' |
1.398 |
1.445 |
| C1' |
C2' |
1.525 |
1.544 |
| C1' |
N9 |
1.481 |
1.465 |
| C1' |
H1' |
1.100 |
1.090 |
| C4 |
N9 |
1.383 |
1.372 |
| N9 |
C8 |
1.382 |
1.363 |
| N3 |
C4 |
1.344 |
1.329 |
| C4 |
C5 |
1.393 |
1.405 |
| N3 |
C2 |
1.323 |
1.317 |
| C2 |
N1 |
1.340 |
1.321 |
| C2 |
H2 |
1.080 |
1.079 |
| N1 |
C6 |
1.355 |
1.329 |
| C5 |
C6 |
1.398 |
1.405 |
| C6 |
N6 |
1.331 |
1.384 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.970 |
| C5 |
N7 |
1.388 |
1.355 |
| C8 |
N7 |
1.317 |
1.302 |
| C8 |
H8 |
1.080 |
1.079 |
| O2' |
C2' |
1.404 |
1.428 |
| C2' |
C3' |
1.522 |
1.545 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| N3' |
C3' |
1.429 |
1.469 |
| C3' |
H3' |
1.100 |
1.089 |
| N3' |
HN3' |
1.000 |
1.009 |
| N3' |
HN3A |
1.000 |
1.010 |
Bond Angles for 8AN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3P |
P |
O1P |
102.5 |
109.5 |
| O3P |
P |
O5' |
101.8 |
109.4 |
| O2P |
P |
O5' |
107.9 |
109.5 |
| O1P |
P |
O5' |
110.4 |
109.5 |
| P |
O1P |
HO1P |
109.5 |
114.1 |
| P |
O5' |
C5' |
121.0 |
123.0 |
| O5' |
C5' |
H5' |
107.1 |
109.5 |
| O5' |
C5' |
H5'A |
105.3 |
109.4 |
| C4' |
C5' |
H5' |
107.0 |
109.5 |
| C4' |
C5' |
H5'A |
105.3 |
109.5 |
| H5' |
C5' |
H5'A |
115.6 |
109.4 |
| O4' |
C4' |
C3' |
109.2 |
104.8 |
| O4' |
C4' |
H4' |
108.7 |
110.5 |
| C3' |
C4' |
H4' |
107.8 |
110.4 |
| C4' |
C3' |
C2' |
104.2 |
104.0 |
| C4' |
C3' |
H3' |
119.6 |
110.5 |
| O4' |
C1' |
C2' |
109.3 |
104.8 |
| O4' |
C1' |
N9 |
108.0 |
110.4 |
| O4' |
C1' |
H1' |
114.9 |
110.3 |
| N9 |
C1' |
C2' |
119.5 |
110.4 |
| C2' |
C1' |
H1' |
101.9 |
110.4 |
| C1' |
C2' |
C3' |
102.4 |
104.1 |
| C1' |
C2' |
H2' |
120.5 |
110.5 |
| N9 |
C1' |
H1' |
103.4 |
110.4 |
| C1' |
N9 |
C8 |
126.5 |
126.3 |
| C4 |
N9 |
C8 |
105.1 |
107.5 |
| N9 |
C8 |
N7 |
114.3 |
110.0 |
| N9 |
C8 |
H8 |
122.8 |
125.0 |
| N3 |
C4 |
C5 |
126.7 |
119.0 |
| C4 |
C5 |
C6 |
117.0 |
118.2 |
| C4 |
C5 |
N7 |
110.8 |
107.2 |
| N3 |
C2 |
N1 |
129.4 |
122.4 |
| N3 |
C2 |
H2 |
115.3 |
118.7 |
| N1 |
C2 |
H2 |
115.3 |
118.8 |
| C2 |
N1 |
C6 |
118.7 |
121.2 |
| N1 |
C6 |
N6 |
119.0 |
120.7 |
| C6 |
N6 |
HN6 |
109.5 |
120.1 |
| C6 |
N6 |
HN6A |
109.5 |
119.9 |
| HN6 |
N6 |
HN6A |
109.4 |
120.0 |
| O2' |
C2' |
C3' |
121.2 |
110.5 |
| O2' |
C2' |
H2' |
101.4 |
110.6 |
| C3' |
C2' |
H2' |
105.8 |
110.5 |
| C2' |
C3' |
H3' |
107.9 |
110.6 |
| N3' |
C3' |
H3' |
111.4 |
110.6 |
| HN3' |
N3' |
HN3A |
109.4 |
110.9 |
Torsion Angles for 8AN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P |
O3P |
O5' |
244.9 |
240.0 |
| O1P |
P |
O3P |
O5' |
114.2 |
120.0 |
| O3P |
P |
O1P |
HO1P |
53.4 |
60.0 |
| O3P |
P |
O5' |
C5' |
258.0 |
305.0 |
| O3P |
P |
O2P |
O5' |
111.4 |
120.0 |
| O1P |
P |
O2P |
O5' |
232.1 |
240.0 |
| O2P |
P |
O1P |
HO1P |
287.9 |
300.0 |
| O2P |
P |
O5' |
C5' |
16.4 |
65.0 |
| O3P |
P |
O1P |
O5' |
252.2 |
240.0 |
| O2P |
P |
O1P |
O5' |
126.7 |
120.0 |
| O1P |
P |
O5' |
C5' |
149.8 |
185.0 |
| O3P |
P |
O5' |
O1P |
108.2 |
120.0 |
| O5' |
P |
O1P |
HO1P |
161.2 |
180.0 |
| P |
O5' |
C5' |
H5' |
196.2 |
300.0 |
| P |
O5' |
C5' |
H5'A |
319.7 |
60.0 |
| HO1P |
O1P |
P |
O5' |
161.2 |
180.0 |
| HO2P |
O2P |
P |
O5' |
42.5 |
60.0 |
| C4' |
C5' |
O5' |
H5' |
240.0 |
240.0 |
| C4' |
C5' |
O5' |
H5'A |
116.5 |
120.0 |
| H5' |
C5' |
O5' |
H5'A |
236.5 |
240.0 |
| O5' |
C5' |
C4' |
H5' |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H5'A |
243.5 |
240.0 |
| H5' |
C5' |
C4' |
H5'A |
123.5 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
116.9 |
120.0 |
| C4' |
C5' |
H5' |
H5'A |
243.1 |
240.0 |
| O5' |
C5' |
H5'A |
H5' |
242.1 |
240.0 |
| C4' |
C5' |
H5'A |
H5' |
117.9 |
120.0 |
| O4' |
C4' |
C5' |
H5' |
269.0 |
309.6 |
| O4' |
C4' |
C5' |
H5'A |
145.5 |
189.6 |
| C3' |
C4' |
O4' |
H4' |
117.3 |
118.9 |
| O4' |
C4' |
C3' |
C2' |
343.0 |
336.0 |
| O4' |
C4' |
C3' |
H3' |
103.6 |
94.7 |
| C3' |
C4' |
C5' |
H5' |
35.2 |
65.0 |
| C3' |
C4' |
C5' |
H5'A |
271.7 |
305.0 |
| O4' |
C4' |
C3' |
H4' |
242.1 |
241.0 |
| C1' |
C2' |
C3' |
C4' |
21.9 |
0.0 |
| O2' |
C2' |
C3' |
C4' |
263.3 |
241.3 |
| C4' |
C3' |
C2' |
H2' |
148.9 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
239.5 |
241.3 |
| N3' |
C3' |
C4' |
H3' |
121.9 |
122.8 |
| H4' |
C4' |
C5' |
H5' |
151.8 |
187.2 |
| H4' |
C4' |
C5' |
H5'A |
28.3 |
67.2 |
| O4' |
C4' |
H4' |
C3' |
118.2 |
115.5 |
| H4' |
C4' |
C3' |
C2' |
100.9 |
95.0 |
| H4' |
C4' |
C3' |
H3' |
221.5 |
213.7 |
| C1' |
O4' |
C4' |
C3' |
4.0 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
246.6 |
281.6 |
| N9 |
C1' |
O4' |
C2' |
228.6 |
241.2 |
| C2' |
C1' |
O4' |
H1' |
246.2 |
241.2 |
| O4' |
C1' |
C2' |
C3' |
339.2 |
23.9 |
| O4' |
C1' |
C2' |
H2' |
222.2 |
265.3 |
| N9 |
C1' |
O4' |
H1' |
114.8 |
122.3 |
| O4' |
C1' |
N9 |
C8 |
46.4 |
23.5 |
| C4' |
C3' |
C2' |
C1' |
21.9 |
0.0 |
| O4' |
C1' |
C2' |
N9 |
235.0 |
241.2 |
| O4' |
C1' |
C2' |
H1' |
122.0 |
118.8 |
| N9 |
C1' |
C2' |
H1' |
246.9 |
237.6 |
| C2' |
C1' |
N9 |
C8 |
280.9 |
268.1 |
| O2' |
C2' |
C1' |
C3' |
128.3 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
245.3 |
237.3 |
| C3' |
C2' |
C1' |
H2' |
117.0 |
118.6 |
| C1' |
C2' |
C3' |
H3' |
253.8 |
241.3 |
| O4' |
C1' |
N9 |
C2' |
125.6 |
115.4 |
| O4' |
C1' |
N9 |
H1' |
237.8 |
237.8 |
| C2' |
C1' |
N9 |
H1' |
112.3 |
122.4 |
| N9 |
C1' |
C2' |
C3' |
104.2 |
142.8 |
| N9 |
C1' |
C2' |
H2' |
347.2 |
24.2 |
| C4 |
N9 |
C1' |
C8 |
180.1 |
180.3 |
| C1' |
N9 |
C8 |
N7 |
178.9 |
179.9 |
| C1' |
N9 |
C8 |
H8 |
358.9 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
242.0 |
244.6 |
| O4' |
C1' |
H1' |
N9 |
117.4 |
122.3 |
| N9 |
C1' |
H1' |
C2' |
124.6 |
122.4 |
| H1' |
C1' |
C2' |
C3' |
217.2 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
100.3 |
146.5 |
| H1' |
C1' |
N9 |
C8 |
168.6 |
145.8 |
| C4 |
N9 |
C1' |
C2' |
100.9 |
88.5 |
| C4 |
N9 |
C1' |
H1' |
348.7 |
326.1 |
| C1' |
N9 |
C4 |
C8 |
179.9 |
179.7 |
| C4 |
N9 |
C8 |
N7 |
358.8 |
359.6 |
| C4 |
N9 |
C8 |
H8 |
178.9 |
179.7 |
| C8 |
N9 |
C1' |
C2' |
280.9 |
268.1 |
| C8 |
N9 |
C1' |
H1' |
168.6 |
145.8 |
| N3 |
C4 |
N9 |
C8 |
181.2 |
180.2 |
| N3 |
C4 |
C5 |
C6 |
358.8 |
360.0 |
| N3 |
C4 |
C5 |
N7 |
178.8 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
1.6 |
0.2 |
| C2 |
N3 |
C4 |
C5 |
1.0 |
360.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.6 |
360.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
N6 |
180.0 |
180.0 |
| N3 |
C2 |
H2 |
N1 |
180.0 |
180.0 |
| H2 |
C2 |
N1 |
C6 |
179.6 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
0.5 |
0.1 |
| C6 |
N1 |
C2 |
H2 |
179.6 |
180.0 |
| N1 |
C6 |
N6 |
HN6 |
37.6 |
359.9 |
| N1 |
C6 |
N6 |
HN6A |
157.6 |
180.0 |
| C4 |
C5 |
C6 |
N7 |
180.0 |
180.1 |
| C5 |
C6 |
N6 |
HN6 |
217.4 |
180.0 |
| C5 |
C6 |
N6 |
HN6A |
337.4 |
0.1 |
| C4 |
C5 |
C6 |
N6 |
180.7 |
180.0 |
| HN6 |
N6 |
C6 |
HN6A |
240.0 |
179.9 |
| C6 |
N6 |
HN6 |
HN6A |
120.0 |
180.1 |
| C6 |
N6 |
HN6A |
HN6 |
240.0 |
179.9 |
| N9 |
C8 |
N7 |
C5 |
0.2 |
0.4 |
| C4 |
C5 |
N7 |
C6 |
180.0 |
179.9 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
179.8 |
| C4' |
C3' |
C2' |
O2' |
263.3 |
241.3 |
| O2' |
C2' |
C1' |
H1' |
345.6 |
23.8 |
| C1' |
C2' |
O2' |
C3' |
243.6 |
245.3 |
| C1' |
C2' |
O2' |
H2' |
127.0 |
122.7 |
| C3' |
C2' |
O2' |
H2' |
243.4 |
237.4 |
| O2' |
C2' |
C3' |
H3' |
135.2 |
122.7 |
| C2' |
C3' |
C4' |
H4' |
100.9 |
95.0 |
| C4' |
C3' |
C2' |
H3' |
128.1 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
217.2 |
265.1 |
| C1' |
C2' |
C3' |
H2' |
232.9 |
241.4 |
| O2' |
C2' |
C3' |
H2' |
114.4 |
122.7 |
| N3' |
C3' |
C2' |
H3' |
236.2 |
237.3 |
| H2' |
C2' |
C1' |
H1' |
100.3 |
146.5 |
| C1' |
C2' |
H2' |
C3' |
115.2 |
114.6 |
| O2' |
C2' |
H2' |
C3' |
232.6 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
20.8 |
360.0 |
| HO2' |
O2' |
C2' |
C3' |
249.3 |
176.1 |
| HO2' |
O2' |
C2' |
H2' |
5.9 |
298.7 |
| N3' |
C3' |
C4' |
H4' |
343.4 |
336.4 |
| C4' |
C3' |
N3' |
H3' |
232.4 |
237.3 |
| N3' |
C3' |
C2' |
H2' |
257.0 |
237.3 |
| C2' |
C3' |
N3' |
H3' |
121.9 |
122.7 |
| H3' |
C3' |
C4' |
H4' |
221.5 |
213.7 |
| C4' |
C3' |
H3' |
C2' |
241.3 |
245.4 |
| H3' |
C3' |
C2' |
H2' |
20.8 |
360.0 |
| HN3' |
N3' |
C3' |
H3' |
5.7 |
302.7 |
| HN3A |
N3' |
C3' |
H3' |
125.7 |
66.6 |