PDB Chemical Component 8AM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8AM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C16 |
C15 |
1.535 |
1.530 |
| C17 |
C15 |
1.535 |
1.529 |
| C13 |
N12 |
1.381 |
1.365 |
| C13 |
N14 |
1.320 |
1.301 |
| C15 |
N12 |
1.474 |
1.465 |
| N12 |
C10 |
1.369 |
1.371 |
| N14 |
C9 |
1.372 |
1.356 |
| C10 |
C9 |
1.395 |
1.405 |
| C10 |
N11 |
1.355 |
1.331 |
| C9 |
C8 |
1.419 |
1.405 |
| C25 |
O24 |
1.430 |
1.428 |
| O24 |
C23 |
1.368 |
1.361 |
| N11 |
C6 |
1.359 |
1.323 |
| C8 |
N18 |
1.405 |
1.384 |
| C8 |
N7 |
1.377 |
1.329 |
| N18 |
C19 |
1.368 |
1.409 |
| C6 |
N7 |
1.360 |
1.327 |
| C6 |
N4 |
1.371 |
1.385 |
| F27 |
C2 |
1.367 |
1.399 |
| C23 |
C19 |
1.402 |
1.406 |
| C23 |
N22 |
1.343 |
1.310 |
| C19 |
C20 |
1.388 |
1.356 |
| C3 |
N4 |
1.449 |
1.486 |
| C3 |
C2 |
1.527 |
1.549 |
| N4 |
C5 |
1.459 |
1.480 |
| N22 |
N21 |
1.346 |
1.400 |
| C2 |
C1 |
1.514 |
1.546 |
| C20 |
N21 |
1.365 |
1.359 |
| C5 |
C1 |
1.539 |
1.541 |
| N21 |
C26 |
1.443 |
1.465 |
| C1 |
N28 |
1.470 |
1.465 |
| N28 |
C29 |
1.385 |
1.347 |
| C29 |
O32 |
1.228 |
1.213 |
| C29 |
C30 |
1.526 |
1.507 |
| C30 |
C31 |
1.522 |
1.530 |
| C5 |
H1 |
1.101 |
1.090 |
| C5 |
H2 |
1.100 |
1.090 |
| C13 |
H3 |
1.080 |
1.080 |
| C15 |
H4 |
1.100 |
1.090 |
| C17 |
H5 |
1.100 |
1.090 |
| C17 |
H6 |
1.100 |
1.089 |
| C17 |
H7 |
1.100 |
1.091 |
| C20 |
H8 |
1.080 |
1.081 |
| C26 |
H9 |
1.100 |
1.089 |
| C26 |
H10 |
1.100 |
1.090 |
| C26 |
H11 |
1.100 |
1.091 |
| C1 |
H12 |
1.100 |
1.089 |
| C2 |
H13 |
1.100 |
1.090 |
| C3 |
H14 |
1.100 |
1.090 |
| C3 |
H15 |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H17 |
1.100 |
1.090 |
| C16 |
H18 |
1.100 |
1.090 |
| N18 |
H19 |
1.000 |
0.970 |
| C25 |
H20 |
1.100 |
1.090 |
| C25 |
H21 |
1.100 |
1.089 |
| C25 |
H22 |
1.100 |
1.090 |
| N28 |
H23 |
1.000 |
0.970 |
| C30 |
H24 |
1.100 |
1.090 |
| C30 |
H25 |
1.100 |
1.090 |
| C31 |
H26 |
1.100 |
1.090 |
| C31 |
H27 |
1.100 |
1.090 |
| C31 |
H28 |
1.100 |
1.090 |
Bond Angles for 8AM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
C15 |
H4 |
107.6 |
109.4 |
| C17 |
C15 |
H4 |
107.6 |
109.6 |
| C13 |
N14 |
C9 |
104.9 |
109.4 |
| N14 |
C13 |
H3 |
123.7 |
125.0 |
| N12 |
C10 |
C9 |
105.9 |
106.1 |
| N12 |
C10 |
N11 |
127.0 |
134.8 |
| C9 |
C10 |
N11 |
127.1 |
119.1 |
| C9 |
C8 |
N18 |
122.7 |
120.7 |
| N7 |
C8 |
N18 |
120.8 |
120.7 |
| C8 |
N18 |
C19 |
128.1 |
120.0 |
| C8 |
N18 |
H19 |
115.9 |
120.0 |
| C6 |
N7 |
C8 |
123.0 |
121.1 |
| C19 |
N18 |
H19 |
116.0 |
120.0 |
| N4 |
C6 |
N7 |
117.6 |
118.9 |
| C6 |
N4 |
C3 |
123.7 |
111.0 |
| F27 |
C2 |
H13 |
113.3 |
110.6 |
| C19 |
C20 |
N21 |
105.9 |
107.6 |
| C19 |
C20 |
H8 |
127.1 |
126.2 |
| N4 |
C3 |
H14 |
111.3 |
110.7 |
| N4 |
C3 |
H15 |
111.4 |
110.7 |
| C3 |
C2 |
H13 |
110.7 |
110.8 |
| N4 |
C5 |
H1 |
111.0 |
109.9 |
| N4 |
C5 |
H2 |
111.0 |
110.1 |
| C2 |
C1 |
N28 |
108.6 |
110.3 |
| C2 |
C1 |
H12 |
111.1 |
110.4 |
| C20 |
N21 |
C26 |
126.7 |
126.0 |
| N21 |
C20 |
H8 |
127.1 |
126.2 |
| C5 |
C1 |
N28 |
110.8 |
110.3 |
| C1 |
C5 |
H1 |
111.0 |
109.9 |
| C1 |
C5 |
H2 |
111.0 |
109.9 |
| C5 |
C1 |
H12 |
110.8 |
110.3 |
| N21 |
C26 |
H9 |
109.5 |
109.5 |
| N21 |
C26 |
H10 |
109.5 |
109.4 |
| N21 |
C26 |
H11 |
109.5 |
109.4 |
| C1 |
N28 |
C29 |
124.3 |
120.0 |
| N28 |
C1 |
H12 |
111.8 |
110.3 |
| C1 |
N28 |
H23 |
117.9 |
120.0 |
| N28 |
C29 |
O32 |
125.1 |
120.0 |
| N28 |
C29 |
C30 |
110.5 |
120.0 |
| C29 |
N28 |
H23 |
117.9 |
120.0 |
| C30 |
C29 |
O32 |
124.4 |
119.9 |
| C29 |
C30 |
C31 |
114.2 |
109.5 |
| C29 |
C30 |
H24 |
108.3 |
109.4 |
| C29 |
C30 |
H25 |
108.3 |
109.5 |
| C31 |
C30 |
H24 |
108.3 |
109.5 |
| C31 |
C30 |
H25 |
108.3 |
109.5 |
| C30 |
C31 |
H26 |
109.5 |
109.4 |
| C30 |
C31 |
H27 |
109.4 |
109.5 |
| C30 |
C31 |
H28 |
109.5 |
109.4 |
| H1 |
C5 |
H2 |
109.5 |
109.9 |
| H5 |
C17 |
H6 |
109.5 |
109.5 |
| H5 |
C17 |
H7 |
109.5 |
109.5 |
| H6 |
C17 |
H7 |
109.5 |
109.5 |
| H9 |
C26 |
H10 |
109.5 |
109.5 |
| H9 |
C26 |
H11 |
109.5 |
109.5 |
| H10 |
C26 |
H11 |
109.4 |
109.5 |
| H14 |
C3 |
H15 |
109.4 |
110.7 |
| H16 |
C16 |
H17 |
109.5 |
109.4 |
| H16 |
C16 |
H18 |
109.5 |
109.5 |
| H17 |
C16 |
H18 |
109.4 |
109.5 |
| H20 |
C25 |
H21 |
109.4 |
109.5 |
| H20 |
C25 |
H22 |
109.5 |
109.5 |
| H21 |
C25 |
H22 |
109.5 |
109.5 |
| H24 |
C30 |
H25 |
109.5 |
109.5 |
| H26 |
C31 |
H27 |
109.5 |
109.5 |
| H26 |
C31 |
H28 |
109.5 |
109.5 |
| H27 |
C31 |
H28 |
109.5 |
109.5 |
Torsion Angles for 8AM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
C15 |
C16 |
H4 |
243.6 |
239.9 |
| C16 |
C15 |
C17 |
H4 |
116.4 |
120.0 |
| C13 |
N12 |
C10 |
C9 |
359.7 |
0.0 |
| C13 |
N12 |
C10 |
N11 |
179.8 |
179.1 |
| C15 |
N12 |
C10 |
C9 |
179.5 |
180.0 |
| C15 |
N12 |
C10 |
N11 |
359.6 |
359.1 |
| C9 |
C10 |
N12 |
N11 |
180.0 |
181.0 |
| C9 |
N14 |
C13 |
H3 |
179.9 |
180.0 |
| N14 |
C9 |
C8 |
N18 |
359.2 |
359.5 |
| C13 |
N14 |
C9 |
C10 |
360.0 |
360.0 |
| N12 |
C10 |
C9 |
N11 |
180.0 |
179.2 |
| C10 |
C9 |
C8 |
N18 |
178.6 |
179.5 |
| N12 |
C10 |
N11 |
C9 |
179.9 |
181.1 |
| N7 |
C8 |
C9 |
N18 |
180.6 |
180.0 |
| C9 |
C8 |
N18 |
C19 |
182.7 |
174.6 |
| C9 |
C8 |
N18 |
H19 |
2.7 |
354.7 |
| C6 |
N7 |
C8 |
N18 |
180.8 |
180.0 |
| C19 |
N18 |
C8 |
H19 |
180.0 |
180.0 |
| C9 |
C8 |
N7 |
N18 |
179.4 |
180.0 |
| N7 |
C8 |
N18 |
C19 |
2.1 |
354.7 |
| N7 |
C8 |
N18 |
H19 |
182.1 |
174.7 |
| N4 |
C6 |
N7 |
C8 |
181.4 |
180.0 |
| C8 |
N18 |
C19 |
H19 |
180.0 |
180.0 |
| N18 |
C19 |
C20 |
N21 |
179.1 |
180.0 |
| N18 |
C19 |
C20 |
H8 |
359.2 |
359.8 |
| N7 |
C6 |
N4 |
C3 |
179.8 |
205.7 |
| C6 |
N4 |
C3 |
H14 |
278.1 |
41.3 |
| C6 |
N4 |
C3 |
H15 |
40.6 |
278.1 |
| C6 |
N4 |
C5 |
H1 |
296.6 |
94.8 |
| C6 |
N4 |
C5 |
H2 |
58.5 |
333.6 |
| C3 |
C2 |
F27 |
H13 |
235.8 |
236.7 |
| F27 |
C2 |
C1 |
N28 |
196.5 |
259.4 |
| F27 |
C2 |
C1 |
H12 |
319.8 |
21.5 |
| C23 |
C19 |
N18 |
H19 |
340.3 |
2.1 |
| C23 |
C19 |
C20 |
H8 |
180.1 |
179.7 |
| C8 |
N18 |
C19 |
C20 |
341.4 |
2.0 |
| C19 |
C20 |
N21 |
C26 |
180.2 |
179.9 |
| N21 |
C20 |
C19 |
H8 |
180.0 |
180.2 |
| C3 |
N4 |
C6 |
N7 |
179.8 |
205.7 |
| N4 |
C3 |
C2 |
H13 |
154.8 |
81.0 |
| C3 |
N4 |
C5 |
H1 |
117.4 |
215.4 |
| C3 |
N4 |
C5 |
H2 |
239.4 |
94.1 |
| H14 |
C3 |
N4 |
H15 |
237.6 |
123.1 |
| C6 |
N4 |
C3 |
C2 |
159.4 |
159.7 |
| F27 |
C2 |
C3 |
H13 |
125.7 |
123.2 |
| C3 |
C2 |
C1 |
N28 |
80.0 |
140.9 |
| C3 |
C2 |
C1 |
H12 |
203.4 |
263.0 |
| N4 |
C5 |
C1 |
N28 |
268.2 |
242.3 |
| C1 |
C5 |
N4 |
H1 |
241.0 |
119.3 |
| C1 |
C5 |
N4 |
H2 |
119.0 |
240.6 |
| N4 |
C5 |
C1 |
H12 |
143.6 |
120.3 |
| H1 |
C5 |
N4 |
H2 |
238.0 |
121.3 |
| N22 |
N21 |
C20 |
H8 |
179.9 |
180.0 |
| N22 |
N21 |
C26 |
H9 |
360.0 |
270.1 |
| N22 |
N21 |
C26 |
H10 |
120.0 |
30.2 |
| N22 |
N21 |
C26 |
H11 |
240.0 |
150.1 |
| C5 |
C1 |
C2 |
N28 |
242.3 |
241.1 |
| C2 |
C1 |
C5 |
H1 |
265.4 |
120.6 |
| C2 |
C1 |
C5 |
H2 |
143.4 |
241.7 |
| C5 |
C1 |
C2 |
H12 |
118.9 |
119.0 |
| C2 |
C1 |
N28 |
C29 |
169.7 |
157.8 |
| N28 |
C1 |
C2 |
H12 |
236.6 |
237.8 |
| C2 |
C1 |
N28 |
H23 |
349.6 |
337.9 |
| C19 |
C20 |
N21 |
H8 |
180.0 |
179.8 |
| C20 |
N21 |
C26 |
H9 |
179.7 |
90.0 |
| C20 |
N21 |
C26 |
H10 |
299.8 |
210.0 |
| C20 |
N21 |
C26 |
H11 |
59.7 |
330.0 |
| N4 |
C5 |
C1 |
H1 |
119.0 |
240.6 |
| N4 |
C5 |
C1 |
H2 |
241.0 |
119.5 |
| C2 |
C1 |
C5 |
N28 |
116.2 |
118.9 |
| C2 |
C1 |
C5 |
H12 |
240.9 |
240.9 |
| C5 |
C1 |
N28 |
C29 |
282.6 |
273.5 |
| N28 |
C1 |
C5 |
H12 |
124.7 |
122.0 |
| C5 |
C1 |
N28 |
H23 |
102.6 |
93.6 |
| H1 |
C5 |
C1 |
H2 |
122.0 |
238.9 |
| C26 |
N21 |
C20 |
H8 |
0.2 |
0.1 |
| H9 |
C26 |
N21 |
H10 |
240.0 |
239.9 |
| H9 |
C26 |
N21 |
H11 |
120.0 |
120.0 |
| H10 |
C26 |
N21 |
H11 |
240.0 |
240.1 |
| C2 |
C1 |
N28 |
H12 |
122.9 |
122.3 |
| N28 |
C1 |
C5 |
H1 |
149.2 |
1.7 |
| N28 |
C1 |
C5 |
H2 |
27.2 |
122.8 |
| C5 |
C1 |
N28 |
H12 |
235.9 |
237.9 |
| C1 |
N28 |
C29 |
O32 |
0.1 |
0.0 |
| C1 |
N28 |
C29 |
C30 |
180.2 |
180.0 |
| C29 |
N28 |
C1 |
H23 |
180.0 |
180.0 |
| C29 |
N28 |
C1 |
H12 |
46.7 |
35.6 |
| C1 |
N28 |
C29 |
H23 |
180.0 |
180.0 |
| C30 |
C29 |
N28 |
O32 |
180.1 |
180.0 |
| N28 |
C29 |
C30 |
C31 |
187.5 |
180.0 |
| N28 |
C29 |
C30 |
H24 |
308.2 |
300.0 |
| N28 |
C29 |
C30 |
H25 |
66.8 |
60.0 |
| N28 |
C29 |
O32 |
C30 |
180.1 |
180.0 |
| O32 |
C29 |
N28 |
H23 |
180.1 |
180.0 |
| O32 |
C29 |
C30 |
C31 |
7.6 |
360.0 |
| O32 |
C29 |
C30 |
H24 |
128.3 |
120.0 |
| O32 |
C29 |
C30 |
H25 |
246.9 |
240.0 |
| N28 |
C29 |
C30 |
O32 |
179.9 |
180.0 |
| C30 |
C29 |
N28 |
H23 |
0.2 |
360.0 |
| C31 |
C30 |
C29 |
H24 |
239.3 |
240.0 |
| C31 |
C30 |
C29 |
H25 |
120.7 |
120.0 |
| C29 |
C30 |
C31 |
H26 |
180.0 |
180.0 |
| C29 |
C30 |
C31 |
H27 |
300.0 |
300.0 |
| C29 |
C30 |
C31 |
H28 |
60.0 |
60.0 |
| H24 |
C30 |
C29 |
H25 |
241.4 |
240.1 |
| C31 |
C30 |
C29 |
O32 |
7.6 |
360.0 |
| C29 |
C30 |
C31 |
H24 |
120.7 |
120.0 |
| C29 |
C30 |
C31 |
H25 |
239.3 |
240.0 |
| H24 |
C30 |
C31 |
H25 |
118.6 |
120.0 |
| H26 |
C31 |
C30 |
H27 |
240.0 |
240.0 |
| H26 |
C31 |
C30 |
H28 |
120.0 |
120.0 |
| H27 |
C31 |
C30 |
H28 |
240.0 |
240.0 |
| N4 |
C5 |
H1 |
H2 |
122.8 |
238.6 |
| H1 |
C5 |
C1 |
N28 |
149.2 |
1.7 |
| C1 |
C5 |
H1 |
H2 |
237.2 |
121.1 |
| H1 |
C5 |
C1 |
H12 |
24.5 |
239.6 |
| N4 |
C5 |
H2 |
H1 |
237.2 |
121.3 |
| H2 |
C5 |
C1 |
N28 |
27.2 |
122.8 |
| C1 |
C5 |
H2 |
H1 |
122.9 |
238.9 |
| H2 |
C5 |
C1 |
H12 |
262.6 |
0.7 |
| H3 |
C13 |
N14 |
C9 |
179.9 |
180.0 |
| H5 |
C17 |
C15 |
H4 |
63.6 |
180.0 |
| H6 |
C17 |
H5 |
H7 |
120.0 |
120.0 |
| H6 |
C17 |
C15 |
H4 |
183.6 |
300.0 |
| H5 |
C17 |
H6 |
H7 |
240.0 |
240.0 |
| H7 |
C17 |
C15 |
H4 |
303.6 |
60.0 |
| H5 |
C17 |
H7 |
H6 |
120.0 |
120.0 |
| C19 |
C20 |
H8 |
N21 |
180.0 |
180.3 |
| H8 |
C20 |
N21 |
C26 |
0.2 |
0.1 |
| N21 |
C26 |
H9 |
H10 |
120.0 |
120.0 |
| N21 |
C26 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C26 |
H9 |
H11 |
120.0 |
120.0 |
| N21 |
C26 |
H10 |
H9 |
239.9 |
239.9 |
| N21 |
C26 |
H10 |
H11 |
120.0 |
119.9 |
| H9 |
C26 |
H10 |
H11 |
240.0 |
240.0 |
| N21 |
C26 |
H11 |
H9 |
120.0 |
120.0 |
| N21 |
C26 |
H11 |
H10 |
240.0 |
240.1 |
| H9 |
C26 |
H11 |
H10 |
120.0 |
120.0 |
| C2 |
C1 |
H12 |
N28 |
238.5 |
237.8 |
| C5 |
C1 |
H12 |
N28 |
124.1 |
122.1 |
| H12 |
C1 |
C5 |
H1 |
24.5 |
239.6 |
| H12 |
C1 |
C5 |
H2 |
262.6 |
0.7 |
| H12 |
C1 |
N28 |
C29 |
46.7 |
35.6 |
| H12 |
C1 |
N28 |
H23 |
226.7 |
215.6 |
| H13 |
C2 |
C1 |
N28 |
321.4 |
22.4 |
| H13 |
C2 |
C1 |
H12 |
84.7 |
144.6 |
| N4 |
C3 |
H14 |
H15 |
123.6 |
236.9 |
| H14 |
C3 |
C2 |
H13 |
36.1 |
199.4 |
| N4 |
C3 |
H15 |
H14 |
236.5 |
123.1 |
| H15 |
C3 |
C2 |
H13 |
273.6 |
322.5 |
| H16 |
C16 |
C15 |
H4 |
296.4 |
300.1 |
| H17 |
C16 |
H16 |
H18 |
120.0 |
119.9 |
| H17 |
C16 |
C15 |
H4 |
56.4 |
60.1 |
| H16 |
C16 |
H17 |
H18 |
240.0 |
240.1 |
| H18 |
C16 |
C15 |
H4 |
176.3 |
180.1 |
| H16 |
C16 |
H18 |
H17 |
120.0 |
119.9 |
| C8 |
N18 |
H19 |
C19 |
180.0 |
180.0 |
| H21 |
C25 |
H20 |
H22 |
120.0 |
120.0 |
| H20 |
C25 |
H21 |
H22 |
240.0 |
240.0 |
| H20 |
C25 |
H22 |
H21 |
120.0 |
120.0 |
| C1 |
N28 |
H23 |
C29 |
180.0 |
180.0 |
| H23 |
N28 |
C1 |
H12 |
226.7 |
215.6 |
| H23 |
N28 |
C29 |
O32 |
180.1 |
180.0 |
| H23 |
N28 |
C29 |
C30 |
0.2 |
360.0 |
| H24 |
C30 |
C29 |
O32 |
128.3 |
120.0 |
| C29 |
C30 |
H24 |
C31 |
235.7 |
240.0 |
| C29 |
C30 |
H24 |
H25 |
117.9 |
119.9 |
| C31 |
C30 |
H24 |
H25 |
242.1 |
240.0 |
| H24 |
C30 |
C31 |
H26 |
59.3 |
60.0 |
| H24 |
C30 |
C31 |
H27 |
179.3 |
180.0 |
| H24 |
C30 |
C31 |
H28 |
299.3 |
300.0 |
| H25 |
C30 |
C29 |
O32 |
246.9 |
240.0 |
| C29 |
C30 |
H25 |
C31 |
124.3 |
120.0 |
| C29 |
C30 |
H25 |
H24 |
242.1 |
240.1 |
| C31 |
C30 |
H25 |
H24 |
117.9 |
120.0 |
| H25 |
C30 |
C31 |
H26 |
300.7 |
300.0 |
| H25 |
C30 |
C31 |
H27 |
60.7 |
60.0 |
| H25 |
C30 |
C31 |
H28 |
180.7 |
180.0 |
| H26 |
C31 |
C30 |
H24 |
59.3 |
60.0 |
| H26 |
C31 |
C30 |
H25 |
300.7 |
300.0 |
| C30 |
C31 |
H26 |
H27 |
120.0 |
120.0 |
| C30 |
C31 |
H26 |
H28 |
240.0 |
240.1 |
| H27 |
C31 |
H26 |
H28 |
120.0 |
120.1 |
| H27 |
C31 |
C30 |
H24 |
179.3 |
180.0 |
| H27 |
C31 |
C30 |
H25 |
60.7 |
60.0 |
| C30 |
C31 |
H27 |
H26 |
240.0 |
240.0 |
| C30 |
C31 |
H27 |
H28 |
120.0 |
119.9 |
| H26 |
C31 |
H27 |
H28 |
240.0 |
239.9 |
| H28 |
C31 |
C30 |
H24 |
299.3 |
300.0 |
| H28 |
C31 |
C30 |
H25 |
180.7 |
180.0 |
| C30 |
C31 |
H28 |
H26 |
120.0 |
119.9 |
| C30 |
C31 |
H28 |
H27 |
240.0 |
240.0 |
| H26 |
C31 |
H28 |
H27 |
120.0 |
120.1 |