PDB Chemical Component 88Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 88Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.473 1.403
C1 C6 1.403 1.365
C1 O11 1.390 1.359
C3 C2 1.402 1.365
O13 C2 1.357 1.359
C3 C4 1.390 1.405
C3 H3 1.080 1.080
N7 C4 1.348 1.338
C4 C5 1.488 1.417
C5 C10 1.450 1.413
C5 C6 1.382 1.403
C6 H6 1.080 1.080
C8 N7 1.350 1.312
C8 C9 1.420 1.389
C8 H8 1.080 1.080
C9 C10 1.410 1.384
C9 H9 1.081 1.080
C10 O14 1.383 1.356
O11 C12 1.429 1.429
C12 H12 1.100 1.090
C12 H12A 1.100 1.089
C12 H12B 1.100 1.090
O13 C23 1.432 1.428
C15 O14 1.366 1.360
C16 C15 1.381 1.386
C15 C20 1.467 1.390
C17 C16 1.377 1.382
C16 H16 1.080 1.080
C17 C18 1.404 1.388
C17 H17 1.080 1.080
N22 C18 1.352 1.401
C18 C19 1.390 1.389
C19 C20 1.396 1.382
C19 H19 1.080 1.080
C20 F21 1.344 1.351
N22 C32 1.350 1.348
N22 HN22 1.000 0.969
C23 C24 1.529 1.530
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C25 C24 1.510 1.529
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
N26 C25 1.448 1.469
C25 H25 1.100 1.090
C25 H25A 1.100 1.090
C27 N26 1.468 1.470
N26 C31 1.460 1.471
C28 C27 1.531 1.531
C27 H27 1.100 1.090
C27 H27A 1.100 1.090
C28 O29 1.420 1.430
C28 H28 1.100 1.089
C28 H28A 1.100 1.090
O29 C30 1.435 1.431
C30 C31 1.538 1.530
C30 H30 1.100 1.090
C30 H30A 1.101 1.090
C31 H31 1.100 1.090
C31 H31A 1.100 1.091
C33 C32 1.518 1.508
C32 O36 1.208 1.213
C34 C33 1.546 1.507
C33 C45 1.542 1.530
C33 C46 1.544 1.530
N35 C34 1.347 1.347
O37 C34 1.237 1.213
C38 N35 1.373 1.399
N35 HN35 1.000 0.971
C43 C38 1.411 1.388
C39 C38 1.409 1.389
C40 C39 1.401 1.382
C39 H39 1.080 1.080
C41 C40 1.416 1.385
C40 H40 1.080 1.080
F44 C41 1.351 1.350
C41 C42 1.398 1.385
C42 C43 1.401 1.381
C42 H42 1.079 1.080
C43 H43 1.080 1.081
C45 C46 1.527 1.530
C45 H45 1.100 1.090
C45 H45A 1.100 1.090
C46 H46 1.100 1.090
C46 H46A 1.100 1.090

Bond Angles for 88Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 119.3 120.7
C2 C1 O11 115.7 119.7
C6 C1 O11 125.1 119.7
C1 C6 C5 118.3 119.7
C1 C6 H6 120.9 120.1
C1 O11 C12 124.5 117.0
C4 C3 H3 120.5 120.1
C3 C4 C5 118.5 119.2
C4 C5 C10 116.8 118.9
C4 C5 C6 123.0 119.8
C6 C5 C10 120.2 121.3
C5 C10 C9 119.0 118.0
C5 C10 O14 116.4 121.0
C5 C6 H6 120.8 120.2
C9 C8 H8 120.1 119.1
C8 C9 C10 120.8 119.7
C8 C9 H9 119.6 120.1
C10 C9 H9 119.6 120.2
C9 C10 O14 124.6 121.0
O11 C12 H12 109.5 109.5
O11 C12 H12A 109.4 109.5
O11 C12 H12B 109.5 109.4
H12 C12 H12A 109.5 109.5
H12 C12 H12B 109.4 109.5
H12A C12 H12B 109.5 109.4
O13 C23 C24 106.1 109.5
O13 C23 H23 110.6 109.5
O13 C23 H23A 110.6 109.5
C16 C15 C20 119.5 120.0
C15 C20 C19 119.8 120.0
C15 C20 F21 115.8 120.0
C17 C16 H16 120.4 120.0
C18 C17 H17 119.0 120.0
C17 C18 C19 120.6 120.0
C18 C19 C20 118.8 119.9
C18 C19 H19 120.6 120.0
C20 C19 H19 120.6 120.0
C19 C20 F21 124.4 120.0
C32 N22 HN22 115.3 120.0
N22 C32 O36 124.4 120.1
C24 C23 H23 110.6 109.4
C24 C23 H23A 110.6 109.5
C23 C24 H24 111.0 109.5
C23 C24 H24A 111.0 109.5
H23 C23 H23A 108.3 109.4
C25 C24 H24 111.0 109.5
C25 C24 H24A 111.0 109.5
H24 C24 H24A 107.9 109.5
N26 C25 H25 107.9 109.5
N26 C25 H25A 107.9 109.4
H25 C25 H25A 111.0 109.4
C27 N26 C31 119.8 110.7
N26 C31 C30 101.1 109.3
N26 C31 H31 112.3 109.5
N26 C31 H31A 112.4 109.5
C28 C27 H27 109.7 109.5
C28 C27 H27A 109.7 109.6
H27 C27 H27A 109.2 109.4
O29 C28 H28 110.8 109.6
O29 C28 H28A 110.8 109.5
C28 O29 C30 107.5 113.7
H28 C28 H28A 108.1 109.6
O29 C30 C31 106.3 109.3
O29 C30 H30 110.5 109.5
O29 C30 H30A 110.5 109.5
C31 C30 H30 110.5 109.5
C31 C30 H30A 110.5 109.5
C30 C31 H31 112.4 109.5
C30 C31 H31A 112.4 109.5
H30 C30 H30A 108.4 109.5
H31 C31 H31A 106.4 109.6
C33 C32 O36 117.5 119.9
C34 C33 C45 118.5 117.5
C34 C33 C46 119.8 117.5
C45 C33 C46 59.3 60.0
C33 C45 C46 60.4 60.0
C33 C45 H45 130.6 117.5
C33 C45 H45A 130.7 117.5
C33 C46 C45 60.3 60.0
C33 C46 H46 130.7 117.5
C33 C46 H46A 130.7 117.5
C38 N35 HN35 119.3 120.0
C40 C39 H39 118.8 120.1
C41 C40 H40 121.6 120.0
C41 C42 C43 121.6 120.1
C41 C42 H42 119.2 120.0
C43 C42 H42 119.2 120.0
C42 C43 H43 121.0 120.0
C46 C45 H45 130.7 117.5
C46 C45 H45A 130.6 117.5
C45 C46 H46 130.8 117.5
C45 C46 H46A 130.7 117.5
H45 C45 H45A 82.2 115.5
H46 C46 H46A 82.0 115.6

Torsion Angles for 88Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 O11 179.1 180.3
C2 C1 C6 C5 359.4 0.1
C2 C1 C6 H6 179.4 179.7
C2 C1 O11 C12 181.4 180.3
C2 C1 C6 O11 181.0 179.7
C6 C1 O11 C12 2.4 360.0
C4 C5 C6 C1 0.3 359.9
C1 C6 C5 C10 180.0 180.0
C5 C6 C1 H6 180.0 180.4
C2 C1 O11 C6 179.0 180.3
O11 C1 C6 C5 178.3 180.3
O11 C1 C6 H6 358.3 359.9
C1 O11 C12 H12 180.0 180.0
C1 O11 C12 H12A 300.0 300.1
C1 O11 C12 H12B 60.0 60.0
C3 C2 C1 C6 360.0 0.0
C3 C2 C1 O11 180.9 179.7
C3 C4 C5 C10 181.0 180.0
C3 C4 C5 C6 0.7 0.1
H3 C3 C4 C5 178.6 180.0
N7 C4 C3 H3 359.2 360.0
N7 C4 C5 C10 0.4 0.0
C1 C6 C5 C4 0.3 359.9
C5 C4 C3 H3 178.6 180.0
C6 C5 C4 C10 179.7 180.1
C4 C5 C10 C9 0.0 360.0
C4 C5 C10 O14 181.8 180.0
C4 C5 C6 H6 180.3 180.3
C4 C5 C10 C6 179.7 180.1
C10 C5 C6 H6 0.1 0.4
C8 C9 C10 C5 357.7 0.1
C5 C10 C9 H9 177.6 180.0
C9 C10 C5 O14 178.3 180.0
C5 C6 C1 O11 178.3 180.3
C1 C6 C5 H6 180.0 179.6
C4 C5 C6 C10 180.3 179.9
C6 C5 C10 C9 180.3 179.9
C6 C5 C10 O14 2.0 359.9
H6 C6 C1 O11 358.3 359.9
C1 C6 H6 C5 180.0 180.4
H6 C6 C5 C10 0.1 0.4
C5 C10 C9 C8 357.7 0.1
C10 C9 C8 H9 180.0 180.0
C8 C9 C10 O14 175.8 180.0
H8 C8 C9 C10 184.3 180.0
H8 C8 C9 H9 4.3 0.0
C5 C10 C9 O14 181.9 180.0
C10 C9 C8 H8 184.3 180.0
C8 C9 C10 H9 180.0 180.0
H9 C9 C8 H8 4.3 0.0
C8 C9 H9 C10 180.0 180.0
H9 C9 C10 O14 355.7 360.0
C5 C10 O14 C9 178.1 180.0
O14 C10 C9 H9 355.7 360.0
H12 C12 O11 H12A 240.0 240.0
H12 C12 O11 H12B 120.0 120.0
H12A C12 O11 H12B 240.0 240.1
O11 C12 H12 H12A 120.0 120.0
O11 C12 H12 H12B 240.0 240.0
H12A C12 H12 H12B 120.0 120.0
O11 C12 H12A H12 240.0 239.9
O11 C12 H12A H12B 120.0 119.9
H12 C12 H12A H12B 240.0 240.0
O11 C12 H12B H12 120.0 120.1
O11 C12 H12B H12A 240.0 240.0
H12 C12 H12B H12A 120.0 120.0
C24 C23 O13 H23 240.0 240.0
C24 C23 O13 H23A 120.0 120.0
O13 C23 C24 H24 32.0 300.0
O13 C23 C24 H24A 152.0 60.0
H23 C23 O13 H23A 240.0 240.0
C16 C15 C20 C19 359.7 359.4
C16 C15 C20 F21 179.4 179.8
C18 C19 C20 C15 1.5 0.5
C15 C20 C19 H19 181.5 180.3
C19 C20 C15 F21 180.4 179.7
C17 C16 C15 C20 359.8 0.3
H16 C16 C15 C20 179.8 180.4
C18 C17 C16 H16 179.3 180.0
C17 C18 C19 C20 357.7 359.8
C17 C18 C19 H19 177.7 180.0
H17 C17 C16 H16 359.4 359.9
H17 C17 C18 C19 181.9 180.0
N22 C18 C17 H17 0.7 360.0
N22 C18 C19 H19 359.0 360.0
C15 C20 C19 C18 1.5 0.5
C19 C18 C17 H17 181.9 180.0
C20 C19 C18 H19 180.0 179.8
C18 C19 C20 F21 181.9 180.2
C15 C20 C19 F21 179.6 180.3
C18 C19 C20 H19 180.0 180.2
C18 C19 H19 C20 180.0 179.8
H19 C19 C20 F21 1.9 0.0
C15 C20 F21 C19 180.4 179.7
F21 C20 C19 H19 1.9 0.0
C33 C32 N22 O36 178.5 179.9
HN22 N22 C32 O36 175.1 177.3
O13 C23 C24 H23 120.0 120.0
O13 C23 C24 H23A 240.0 240.0
H23 C23 C24 H23A 120.0 119.9
C25 C24 C23 H24 240.0 240.0
C25 C24 C23 H24A 120.0 120.0
H24 C24 C23 H24A 240.0 240.0
O13 C23 H23 C24 242.8 240.0
O13 C23 H23 H23A 121.4 120.0
C24 C23 H23 H23A 238.6 240.0
H23 C23 C24 H24 272.0 180.0
H23 C23 C24 H24A 32.0 299.9
O13 C23 H23A C24 117.2 120.0
O13 C23 H23A H23 238.6 240.0
C24 C23 H23A H23 121.4 119.9
H23A C23 C24 H24 152.0 60.0
H23A C23 C24 H24A 272.0 180.0
C25 C24 C23 H23 152.0 59.9
C25 C24 C23 H23A 32.0 300.0
C23 C24 C25 H24 120.0 120.0
C23 C24 C25 H24A 240.0 240.0
H24 C24 C25 H24A 120.0 120.0
H24 C24 C23 H23 272.0 180.0
H24 C24 C23 H23A 152.0 60.0
C23 C24 H24 H24A 121.8 120.0
C25 C24 H24 H24A 238.2 240.0
H24A C24 C23 H23 32.0 299.9
H24A C24 C23 H23A 272.0 180.0
C23 C24 H24A H24 238.1 240.0
C25 C24 H24A H24 121.8 120.0
N26 C25 C24 H24 56.4 60.0
N26 C25 C24 H24A 296.5 300.0
H25 C25 N26 H25A 120.0 119.9
H25 C25 C24 H24 176.4 180.0
H25 C25 C24 H24A 56.5 60.0
N26 C25 H25 H25A 242.0 240.1
H25A C25 C24 H24 296.4 300.0
H25A C25 C24 H24A 176.4 180.0
N26 C25 H25A H25 118.0 119.9
C27 N26 C25 H25 73.8 306.3
C27 N26 C25 H25A 313.8 186.4
C27 N26 C31 C30 306.5 301.4
C27 N26 C31 H31 66.5 61.4
C27 N26 C31 H31A 186.5 181.5
C31 N26 C25 H25 229.1 69.9
C31 N26 C25 H25A 109.2 310.0
O29 C30 C31 N26 64.0 56.9
N26 C31 C30 H30 304.0 296.9
N26 C31 C30 H30A 184.0 176.8
C30 C31 N26 H31 240.0 240.1
C30 C31 N26 H31A 120.0 119.9
H31 C31 N26 H31A 240.0 239.9
C28 C27 N26 C31 49.7 58.6
H27 C27 C28 H27A 120.0 120.1
H27 C27 N26 C31 169.7 178.6
C28 C27 H27 H27A 239.8 239.8
H27A C27 N26 C31 289.7 298.6
C28 C27 H27A H27 120.3 120.1
O29 C28 C27 H27 187.9 183.2
O29 C28 C27 H27A 67.9 63.1
H28 C28 O29 H28A 120.0 120.2
C28 O29 C30 C31 280.5 301.3
C28 O29 C30 H30 40.5 61.2
C28 O29 C30 H30A 160.5 181.3
H28 C28 C27 H27 307.9 303.1
H28 C28 C27 H27A 187.9 183.1
O29 C28 H28 H28A 238.5 239.8
H28 C28 O29 C30 310.0 298.7
H28A C28 C27 H27 67.9 63.3
H28A C28 C27 H27A 307.9 303.2
O29 C28 H28A H28 121.5 120.2
H28A C28 O29 C30 190.0 178.5
N26 C31 C30 O29 64.0 56.9
C30 O29 C28 H28 310.0 298.7
C30 O29 C28 H28A 190.0 178.5
C31 C30 O29 H30 240.0 240.1
C31 C30 O29 H30A 120.0 120.0
O29 C30 C31 H31 304.0 296.9
O29 C30 C31 H31A 184.0 176.8
H30 C30 O29 H30A 240.0 239.9
N26 C31 C30 H31 120.0 119.9
N26 C31 C30 H31A 240.0 240.1
O29 C30 C31 H30 120.0 119.9
O29 C30 C31 H30A 240.0 240.0
H30 C30 C31 H30A 120.0 120.1
H31 C31 C30 H31A 120.0 120.2
O29 C30 H30 C31 242.5 240.2
O29 C30 H30 H30A 121.3 120.1
C31 C30 H30 H30A 238.7 239.9
H30 C30 C31 H31 184.0 177.0
H30 C30 C31 H31A 64.0 56.8
O29 C30 H30A C31 117.5 119.8
O29 C30 H30A H30 238.7 239.9
C31 C30 H30A H30 121.3 120.1
H30A C30 C31 H31 64.0 56.9
H30A C30 C31 H31A 304.0 296.7
N26 C31 H31 C30 246.8 240.2
N26 C31 H31 H31A 123.4 120.1
H31 C31 C30 H30 184.0 177.0
H31 C31 C30 H30A 64.0 56.9
C30 C31 H31 H31A 236.6 239.9
N26 C31 H31A C30 113.2 119.8
N26 C31 H31A H31 236.6 239.9
H31A C31 C30 H30 64.0 56.8
H31A C31 C30 H30A 304.0 296.7
C30 C31 H31A H31 123.4 120.1
C33 C32 N22 HN22 353.6 357.2
N22 C32 C33 O36 181.4 180.1
O36 C32 N22 HN22 175.1 177.3
C34 C33 C32 O36 171.5 153.6
C45 C33 C34 C46 291.0 291.3
C34 C33 C45 C46 109.6 107.5
C34 C33 C45 H45 229.6 215.1
C34 C33 C45 H45A 349.6 360.0
C34 C33 C46 C45 252.5 252.5
C34 C33 C46 H46 12.6 359.9
C34 C33 C46 H46A 132.6 145.0
C45 C33 C32 O36 32.1 7.9
C45 C33 C46 C45 -0.0 -0.0
C45 C33 C46 H46 120.0 107.5
C45 C33 C46 H46A 240.0 252.6
C46 C45 C33 H45 240.0 252.5
C46 C45 C33 H45A 120.0 107.5
C33 C45 C46 H46 240.0 252.5
C33 C45 C46 H46A 120.0 107.5
H45 C45 C33 H45A 240.0 215.1
C46 C33 C32 O36 327.5 299.3
C46 C33 C45 C46 -0.0 360.0
C46 C33 C45 H45 120.0 107.5
C46 C33 C45 H45A 240.0 252.5
C33 C46 C45 H45 240.0 252.5
C33 C46 C45 H45A 120.0 107.4
C45 C46 C33 H46 240.0 252.5
C45 C46 C33 H46A 120.0 107.4
H46 C46 C33 H46A 240.0 214.9
N35 C34 C33 C45 309.5 199.5
N35 C34 C33 C46 18.5 268.2
O37 C34 C33 C45 151.0 19.5
O37 C34 C33 C46 220.0 88.2
C43 C38 N35 HN35 65.2 222.7
C39 C38 N35 HN35 247.4 43.0
C41 C40 C39 H39 177.9 180.0
H40 C40 C39 H39 357.9 0.0
F44 C41 C40 H40 1.3 0.0
F44 C41 C42 H42 358.4 360.0
C42 C41 C40 H40 181.5 180.0
C43 C42 C41 H42 180.0 179.7
C41 C42 C43 H43 182.6 180.0
C41 C42 C43 H42 180.0 180.3
C41 C42 H42 C43 180.0 179.7
H42 C42 C43 H43 2.6 359.7
H43 C43 C42 H42 2.6 359.7
C46 C45 C33 C46 360.0 360.0
C33 C45 C46 H45 120.0 107.5
C33 C45 C46 H45A 240.0 252.6
C33 C46 C45 H46 120.0 107.5
C33 C46 C45 H46A 240.0 252.5
H45 C45 C46 H45A 120.0 145.1
H46 C46 C45 H46A 120.0 145.0
H45 C45 C33 C46 120.0 107.5
C33 C45 H45 C46 276.9 291.4
C33 C45 H45 H45A 138.5 145.6
C46 C45 H45 H45A 221.5 214.3
H45 C45 C46 H46 120.0 145.0
H45 C45 C46 H46A 0.0 0.0
H45A C45 C33 C46 240.0 252.5
C33 C45 H45A C46 83.1 68.6
C33 C45 H45A H45 221.6 214.4
C46 C45 H45A H45 138.5 145.7
H45A C45 C46 H46 0.0 360.0
H45A C45 C46 H46A 240.0 215.0
C33 C46 H46 C45 277.0 291.4
C33 C46 H46 H46A 138.5 145.8
H46 C46 C45 H45 120.0 145.0
H46 C46 C45 H45A 0.0 360.0
C45 C46 H46 H46A 221.5 214.4
C33 C46 H46A C45 83.0 68.6
C33 C46 H46A H46 221.5 214.2
H46A C46 C45 H45 0.0 0.0
H46A C46 C45 H45A 240.0 215.0
C45 C46 H46A H46 138.5 145.6