PDB Chemical Component 88A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 88A

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	S	1.483	1.421
S	O1	1.468	1.420
S	C1	1.841	1.815
S	C21	1.792	1.762
C21	C20	1.397	1.384
C21	C22	1.397	1.383
C20	C19	1.402	1.380
C19	C18	1.417	1.395
C22	C23	1.391	1.380
C23	C18	1.406	1.394
C18	C2	1.471	1.481
C2	C6	1.422	1.416
C2	C3	1.396	1.385
C6	N3	1.328	1.327
C6	N1	1.381	1.365
N3	C7	1.343	1.331
C7	N2	1.306	1.318
C7	N4	1.385	1.393
N2	N1	1.370	1.402
N1	C5	1.357	1.359
C5	C4	1.367	1.353
C4	C3	1.420	1.399
N4	C8	1.341	1.400
C8	C13	1.399	1.389
C8	C9	1.411	1.388
C13	C12	1.397	1.381
C12	C11	1.412	1.389
C11	C10	1.402	1.389
C11	N5	1.371	1.400
C10	C9	1.401	1.380
N5	C17	1.480	1.470
N5	C14	1.472	1.470
C17	C16	1.548	1.530
C16	O3	1.438	1.430
O3	C15	1.435	1.431
C15	C14	1.552	1.531
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C1	H13C	1.100	1.090
C20	H20	1.080	1.080
C22	H22	1.080	1.080
C19	H19	1.080	1.079
C23	H23	1.080	1.080
C3	H3	1.081	1.080
N4	H4	1.000	0.971
C5	H5	1.080	1.080
C4	HB	1.080	1.080
C13	H13	1.080	1.080
C9	H9	1.080	1.081
C12	H12	1.080	1.080
C10	H10	1.080	1.080
C17	H171	1.100	1.090
C17	H172	1.100	1.090
C14	H141	1.100	1.090
C14	H142	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.090
C15	H151	1.100	1.090
C15	H152	1.100	1.090

Bond Angles for 88A

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	S	O1	117.9	121.1
O2	S	C1	107.2	110.5
O2	S	C21	109.6	104.3
O1	S	C1	108.5	110.5
O1	S	C21	109.7	104.3
C1	S	C21	102.8	104.4
S	C1	H11C	109.5	109.5
S	C1	H12C	109.5	109.4
S	C1	H13C	109.5	109.5
S	C21	C20	121.1	119.9
S	C21	C22	118.7	119.8
C20	C21	C22	120.1	120.3
C21	C20	C19	119.3	120.1
C21	C20	H20	120.4	120.0
C21	C22	C23	120.3	120.1
C21	C22	H22	119.9	120.0
C20	C19	C18	121.5	119.8
C19	C20	H20	120.4	119.9
C20	C19	H19	119.2	120.1
C19	C18	C23	117.5	119.7
C19	C18	C2	122.5	120.1
C18	C19	H19	119.3	120.1
C22	C23	C18	121.3	119.9
C23	C22	H22	119.9	119.9
C22	C23	H23	119.3	120.0
C23	C18	C2	120.0	120.1
C18	C23	H23	119.3	120.1
C18	C2	C6	119.5	120.6
C18	C2	C3	123.2	120.5
C6	C2	C3	117.3	118.9
C2	C6	N3	133.4	132.7
C2	C6	N1	117.8	119.7
C2	C3	C4	122.3	119.3
C2	C3	H3	118.9	120.3
N3	C6	N1	108.8	107.6
C6	N3	C7	102.1	109.7
C6	N1	N2	110.0	106.3
C6	N1	C5	124.9	120.7
N3	C7	N2	118.7	109.3
N3	C7	N4	120.1	125.3
N2	C7	N4	121.2	125.3
C7	N2	N1	100.3	107.1
C7	N4	C8	134.5	120.0
C7	N4	H4	112.8	119.9
N2	N1	C5	125.0	133.0
N1	C5	C4	118.8	121.1
N1	C5	H5	120.6	119.5
C5	C4	C3	118.8	120.3
C4	C5	H5	120.6	119.5
C5	C4	HB	120.6	119.9
C4	C3	H3	118.9	120.4
C3	C4	HB	120.6	119.8
N4	C8	C13	122.9	120.0
N4	C8	C9	118.8	120.0
C8	N4	H4	112.7	120.0
C13	C8	C9	118.3	120.0
C8	C13	C12	120.5	120.0
C8	C13	H13	119.7	120.0
C8	C9	C10	120.7	120.0
C8	C9	H9	119.7	120.0
C13	C12	C11	121.9	120.0
C12	C13	H13	119.8	120.0
C13	C12	H12	119.1	120.0
C12	C11	C10	117.1	120.0
C12	C11	N5	119.5	120.0
C11	C12	H12	119.0	120.0
C10	C11	N5	123.5	120.0
C11	C10	C9	121.5	120.0
C11	C10	H10	119.3	120.0
C11	N5	C17	123.1	111.0
C11	N5	C14	126.0	111.0
C10	C9	H9	119.6	119.9
C9	C10	H10	119.2	120.1
C17	N5	C14	110.8	110.7
N5	C17	C16	113.2	109.3
N5	C17	H171	108.5	109.5
N5	C17	H172	108.5	109.5
N5	C14	C15	109.9	109.3
N5	C14	H141	109.4	109.5
N5	C14	H142	109.3	109.5
C17	C16	O3	108.2	109.3
C16	C17	H171	108.5	109.5
C16	C17	H172	108.5	109.5
C17	C16	H161	109.8	109.5
C17	C16	H162	109.8	109.5
C16	O3	C15	112.5	113.7
O3	C16	H161	109.8	109.5
O3	C16	H162	109.8	109.5
O3	C15	C14	112.8	109.2
O3	C15	H151	108.6	109.5
O3	C15	H152	108.7	109.5
C15	C14	H141	109.4	109.5
C15	C14	H142	109.4	109.5
C14	C15	H151	108.6	109.5
C14	C15	H152	108.6	109.5
H11C	C1	H12C	109.4	109.5
H11C	C1	H13C	109.5	109.5
H12C	C1	H13C	109.4	109.5
H171	C17	H172	109.4	109.6
H141	C14	H142	109.5	109.5
H161	C16	H162	109.4	109.5
H151	C15	H152	109.5	109.6

Torsion Angles for 88A

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	S	O2	C1	237.3	228.5
O1	S	O2	C21	126.4	116.8
C1	S	O2	C21	249.1	248.3
O2	S	C1	H11C	180.0	51.6
O2	S	C1	H12C	300.0	171.6
O2	S	C1	H13C	60.0	291.6
O2	S	C21	C20	4.4	334.0
O2	S	C21	C22	186.5	153.7
O2	S	O1	C1	122.1	131.5
O2	S	O1	C21	233.6	243.2
C1	S	O1	C21	111.6	111.7
O1	S	C1	H11C	308.4	188.4
O1	S	C1	H12C	68.4	308.4
O1	S	C1	H13C	188.3	68.3
O1	S	C21	C20	233.5	206.1
O1	S	C21	C22	55.6	25.8
O2	S	C1	O1	231.6	223.2
O2	S	C1	C21	115.5	111.6
O1	S	C1	C21	243.9	248.4
C1	S	C21	C20	118.2	90.0
C1	S	C21	C22	300.3	269.7
H11C	C1	S	H12C	240.0	240.0
H11C	C1	S	H13C	120.0	120.0
H12C	C1	S	H13C	240.0	240.0
O2	S	C21	O1	130.9	127.9
O2	S	C21	C1	246.2	244.0
O1	S	C21	C1	115.3	116.1
C21	S	C1	H11C	64.5	300.0
C21	S	C1	H12C	184.5	60.0
C21	S	C1	H13C	304.5	180.0
C20	C21	S	C22	177.9	180.3
S	C21	C20	C19	180.9	180.0
S	C21	C20	H20	0.9	359.9
S	C21	C22	C23	179.0	180.1
S	C21	C22	H22	359.0	0.0
S	C21	C20	C22	182.1	179.7
C20	C21	C22	C23	1.0	359.8
C20	C21	C22	H22	181.0	179.7
C21	C20	C19	C18	1.1	360.0
C19	C20	C21	H20	180.0	180.1
C21	C20	C19	H19	181.1	180.0
S	C21	C22	C20	178.0	180.3
C22	C21	C20	C19	358.8	0.3
C22	C21	C20	H20	178.8	180.2
C21	C22	C23	C18	359.3	359.9
C23	C22	C21	H22	180.0	180.1
C21	C22	C23	H23	179.3	180.0
C19	C20	C21	C22	358.8	0.3
C21	C20	C19	H20	180.0	179.9
C20	C19	C18	C23	359.2	359.7
C20	C19	C18	C2	180.4	180.0
C18	C19	C20	H19	180.0	180.0
C18	C19	C20	H20	181.1	180.0
C20	C19	C18	H19	180.0	180.0
C22	C23	C18	C19	0.6	0.3
C23	C18	C19	C2	178.8	179.8
C19	C18	C23	H23	180.6	180.3
C19	C18	C2	C6	329.3	245.0
C19	C18	C2	C3	150.8	64.7
C21	C22	C23	H22	180.0	179.9
C19	C18	C23	C22	0.6	0.3
C22	C23	C18	C2	179.4	180.1
C18	C23	C22	H23	180.0	180.0
C19	C18	C23	C2	181.2	180.2
C23	C18	C19	H19	179.2	179.7
C18	C23	C22	H22	179.3	180.0
C22	C23	C18	H23	180.0	180.0
C23	C18	C2	C6	150.5	65.3
C23	C18	C2	C3	332.0	245.0
C19	C18	C2	C23	178.8	179.8
C2	C18	C19	H19	0.4	360.0
C2	C18	C23	H23	359.4	0.0
C6	C2	C18	C3	178.5	180.3
C18	C2	C6	N3	2.0	360.0
C18	C2	C6	N1	180.2	180.0
C18	C2	C3	C4	179.2	179.8
C18	C2	C3	H3	359.2	0.0
C18	C2	C6	C3	181.4	179.7
C6	C2	C3	C4	0.7	359.5
C6	C2	C3	H3	180.7	179.7
N3	C6	C2	N1	181.8	180.0
C2	C6	N3	C7	179.2	180.0
C2	C6	N1	N2	181.1	180.0
C2	C6	N1	C5	1.1	360.0
C18	C2	C3	C6	178.5	180.3
C3	C2	C6	N3	180.6	180.3
C3	C2	C6	N1	358.8	0.3
C5	C4	C3	C2	0.0	0.5
C4	C3	C2	H3	180.0	179.8
C2	C3	C4	HB	180.0	180.2
N3	C6	C2	C3	180.6	180.3
C2	C6	N3	N1	178.3	180.0
N3	C6	N1	N2	359.7	0.0
N3	C6	N1	C5	179.7	180.0
C6	N3	C7	N2	358.7	359.9
C6	N3	C7	N4	180.2	180.0
N1	C6	C2	C3	358.8	0.3
C2	C6	N1	N3	181.4	180.0
N1	C6	N3	C7	0.9	0.0
C7	N2	N1	C6	359.6	359.9
N2	N1	C6	C5	180.0	180.0
C6	N1	C5	C4	359.6	360.0
C6	N1	C5	H5	179.6	180.0
C7	N3	C6	N1	0.9	0.0
N2	C7	N3	N4	178.5	180.0
N3	C7	N2	N1	1.1	0.1
N3	C7	N4	C8	7.9	174.3
N3	C7	N4	H4	187.9	354.3
C6	N1	N2	C7	359.6	359.9
N3	C7	N2	N4	181.5	180.0
N2	C7	N4	C8	189.5	354.4
N2	C7	N4	H4	9.5	174.4
C7	N2	N1	C5	179.5	180.0
N3	C7	N4	N2	178.4	180.0
N4	C7	N2	N1	179.6	180.0
C7	N4	C8	C13	351.8	154.6
C7	N4	C8	C9	169.7	334.3
C8	N4	C7	H4	180.0	180.0
C6	N1	N2	C5	180.0	179.9
N1	N2	C7	N4	179.6	180.0
N2	N1	C5	C4	179.6	179.9
N2	N1	C5	H5	359.6	359.9
C6	N1	C5	N2	180.0	180.1
N1	C5	C4	C3	359.8	359.8
C4	C5	N1	H5	180.0	180.0
N1	C5	C4	HB	179.8	180.0
C2	C3	C4	C5	0.0	0.5
N1	C5	C4	H5	180.0	180.0
C5	C4	C3	H3	180.0	180.2
C3	C4	C5	HB	180.0	179.7
C2	C3	C4	H3	180.0	180.2
C3	C4	C5	H5	179.8	179.8
C5	C4	C3	HB	180.0	180.3
C7	N4	C8	H4	180.0	180.0
C13	C8	N4	C9	182.1	180.2
N4	C8	C13	C12	179.5	180.0
N4	C8	C13	H13	359.5	360.0
N4	C8	C9	C10	181.2	179.7
N4	C8	C9	H9	1.2	359.9
N4	C8	C13	C9	177.9	179.8
C13	C8	N4	H4	171.8	334.6
C13	C8	C9	C10	359.1	359.5
C13	C8	C9	H9	179.2	179.7
C8	C13	C12	C11	358.5	0.1
C12	C13	C8	H13	180.0	180.0
C8	C13	C12	H12	178.5	179.9
N4	C8	C9	C13	182.0	180.2
C9	C8	N4	H4	349.7	154.3
C9	C8	C13	C12	1.6	0.2
C9	C8	C13	H13	181.6	180.2
C11	C10	C9	C8	360.0	0.5
C10	C9	C8	H9	180.0	179.8
C8	C9	C10	H10	180.0	180.3
C12	C13	C8	C9	1.6	0.2
C8	C13	C12	H13	180.0	180.0
C13	C12	C11	C10	0.6	359.9
C13	C12	C11	N5	180.9	180.0
C11	C12	C13	H12	180.0	180.1
C11	C12	C13	H13	178.5	180.1
C13	C12	C11	H12	180.0	179.9
C10	C11	C12	N5	179.7	179.9
C12	C11	C10	C9	0.2	359.8
C12	C11	C10	H10	180.2	180.0
C12	C11	N5	C17	16.6	180.0
C12	C11	N5	C14	197.6	56.3
C8	C9	C10	C11	360.0	0.5
C12	C11	C10	N5	180.3	180.1
C10	C11	C12	H12	180.6	180.1
C10	C11	N5	C17	196.9	0.0
C10	C11	N5	C14	17.9	236.4
C11	C10	C9	H9	180.0	180.3
C9	C10	C11	H10	180.0	179.8
C12	C11	N5	C10	179.7	179.9
N5	C11	C12	H12	0.9	0.1
N5	C11	C10	C9	179.9	179.7
N5	C11	C10	H10	359.9	360.0
C17	N5	C11	C14	179.0	123.6
C11	N5	C17	C16	160.5	177.6
C11	N5	C17	H171	281.1	297.5
C11	N5	C17	H172	39.9	57.7
C11	N5	C14	C15	239.1	182.4
C11	N5	C14	H141	359.1	302.3
C11	N5	C14	H142	119.0	62.4
C8	C9	C10	H9	180.0	180.2
C9	C10	C11	N5	179.9	179.7
C11	C10	C9	H10	180.0	180.2
C11	N5	C17	C14	180.8	236.2
C17	N5	C14	C15	59.9	58.6
C17	N5	C14	H141	180.0	178.5
C17	N5	C14	H142	299.9	298.7
N5	C17	C16	O3	318.9	56.9
C16	C17	N5	H171	239.4	240.1
C16	C17	N5	H172	120.6	119.9
N5	C17	C16	H161	78.7	176.8
N5	C17	C16	H162	199.1	296.9
H171	C17	N5	H172	241.1	239.9
C11	N5	C14	C17	179.1	123.8
C14	N5	C17	C16	339.7	301.4
C14	N5	C17	H171	100.3	61.3
C14	N5	C17	H172	219.1	181.5
O3	C15	C14	N5	322.5	303.1
C15	C14	N5	H141	239.9	240.1
C15	C14	N5	H142	120.0	120.0
N5	C14	C15	H151	202.0	183.2
N5	C14	C15	H152	83.0	63.0
H141	C14	N5	H142	240.1	239.9
C16	C17	N5	C14	339.7	301.4
N5	C17	C16	H171	120.6	119.9
N5	C17	C16	H172	239.4	240.1
C17	C16	O3	C15	65.5	301.3
O3	C16	C17	H161	240.2	240.1
O3	C16	C17	H162	119.8	120.0
H171	C17	C16	H172	118.9	120.2
H161	C16	C17	H162	239.6	239.9
O3	C16	C17	H171	198.3	296.9
O3	C16	C17	H172	79.5	176.8
C17	C16	O3	H161	119.8	120.0
C17	C16	O3	H162	240.2	240.0
C16	O3	C15	C14	334.4	58.7
C16	O3	C15	H151	94.9	178.6
C16	O3	C15	H152	213.9	298.7
H161	C16	O3	H162	120.4	120.1
N5	C14	C15	O3	322.5	303.1
C15	O3	C16	H161	305.6	181.4
C15	O3	C16	H162	185.3	61.3
O3	C15	C14	H141	202.4	183.2
O3	C15	C14	H142	82.5	63.1
C14	C15	O3	H151	239.5	240.1
C14	C15	O3	H152	120.5	119.9
H151	C15	O3	H152	241.0	239.8
N5	C14	C15	H141	120.1	119.9
N5	C14	C15	H142	240.0	240.0
O3	C15	C14	H151	120.5	119.9
O3	C15	C14	H152	239.5	240.1
H141	C14	C15	H142	119.9	120.1
H151	C15	C14	H152	119.0	120.2
H11C	C1	S	C21	64.5	300.0
S	C1	H11C	H12C	120.0	120.0
S	C1	H11C	H13C	240.0	240.0
H12C	C1	H11C	H13C	119.9	120.0
H12C	C1	S	C21	184.5	60.0
S	C1	H12C	H11C	240.0	240.0
S	C1	H12C	H13C	120.0	120.0
H11C	C1	H12C	H13C	240.0	240.0
H13C	C1	S	C21	304.5	180.0
S	C1	H13C	H11C	120.1	120.0
S	C1	H13C	H12C	240.0	240.1
H11C	C1	H13C	H12C	119.9	120.0
H20	C20	C21	C22	178.8	180.2
C21	C20	H20	C19	180.0	180.1
H20	C20	C19	C18	181.1	180.0
H20	C20	C19	H19	1.0	0.0
C21	C22	H22	C23	180.0	180.1
H22	C22	C23	C18	179.3	180.0
H22	C22	C23	H23	359.3	0.0
C20	C19	H19	C18	180.0	180.0
H19	C19	C20	H20	1.0	0.0
H19	C19	C18	C23	179.2	179.7
H19	C19	C18	C2	0.4	360.0
C22	C23	H23	C18	180.0	180.0
H23	C23	C22	H22	359.3	0.0
H23	C23	C18	C2	359.4	0.0
C2	C3	H3	C4	180.0	179.8
H3	C3	C4	HB	0.0	360.0
C7	N4	H4	C8	180.0	180.0
H4	N4	C8	C13	171.8	334.6
H4	N4	C8	C9	349.7	154.3
N1	C5	H5	C4	180.0	180.0
H5	C5	C4	C3	179.8	179.8
H5	C5	C4	HB	359.8	0.0
C5	C4	HB	C3	180.0	179.7
HB	C4	C5	H5	359.8	0.0
HB	C4	C3	H3	0.0	360.0
H13	C13	C8	C9	181.6	180.2
C8	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	178.5	180.1
H13	C13	C12	H12	358.4	359.9
C8	C9	H9	C10	180.0	179.8
H9	C9	C10	H10	360.0	0.1
C13	C12	H12	C11	180.0	180.1
H12	C12	C13	H13	358.4	359.9
H12	C12	C11	C10	180.6	180.1
H12	C12	C11	N5	0.9	0.1
H10	C10	C11	N5	359.9	360.0
C11	C10	H10	C9	180.0	179.8
H10	C10	C9	H9	360.0	0.1
H171	C17	N5	C14	100.3	61.3
N5	C17	H171	C16	236.6	240.2
N5	C17	H171	H172	118.3	120.1
H171	C17	C16	O3	198.3	296.9
C16	C17	H171	H172	241.7	239.9
H171	C17	C16	H161	318.1	56.9
H171	C17	C16	H162	78.5	176.9
H172	C17	N5	C14	219.1	181.5
N5	C17	H172	C16	123.4	119.8
N5	C17	H172	H171	241.7	239.9
H172	C17	C16	O3	79.5	176.8
C16	C17	H172	H171	118.3	120.1
H172	C17	C16	H161	199.3	296.7
H172	C17	C16	H162	319.7	56.8
N5	C14	H141	C15	239.6	240.2
N5	C14	H141	H142	119.8	120.1
C15	C14	H141	H142	240.2	239.9
H141	C14	C15	H151	81.9	63.3
H141	C14	C15	H152	323.0	303.1
N5	C14	H142	C15	120.4	119.8
N5	C14	H142	H141	240.2	239.9
C15	C14	H142	H141	119.8	120.1
H142	C14	C15	H151	322.0	303.2
H142	C14	C15	H152	203.1	183.0
C17	C16	H161	O3	241.2	240.2
H161	C16	C17	H171	318.1	56.9
H161	C16	C17	H172	199.3	296.7
C17	C16	H161	H162	120.6	120.1
H161	C16	O3	C15	305.6	181.4
O3	C16	H161	H162	239.4	239.9
C17	C16	H162	O3	118.8	119.8
H162	C16	C17	H171	78.5	176.9
H162	C16	C17	H172	319.7	56.8
C17	C16	H162	H161	239.4	239.9
H162	C16	O3	C15	185.3	61.3
O3	C16	H162	H161	120.6	120.1
O3	C15	H151	C14	236.9	240.3
O3	C15	H151	H152	118.5	120.1
H151	C15	C14	H141	81.9	63.3
H151	C15	C14	H142	322.0	303.2
C14	C15	H151	H152	241.6	239.8
O3	C15	H152	C14	123.1	119.7
O3	C15	H152	H151	241.5	239.9
H152	C15	C14	H141	323.0	303.1
H152	C15	C14	H142	203.1	183.0
C14	C15	H152	H151	118.4	120.2