PDB Chemical Component 87Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 87Y

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N2	C3	1.353	1.351
N2	C1	1.335	1.361
N2	H2	1.020	0.970
C3	O8	1.271	1.220
C3	C7	1.458	1.409
C7	N10	1.418	1.363
C7	C6	1.358	1.401
N10	C12	1.277	1.288
C12	C15	1.504	1.507
C12	C11	1.510	1.507
C15	O16	1.412	1.429
C15	H152	1.115	1.089
C15	H151	1.115	1.090
O16	H16	0.950	0.967
C11	C14	1.505	1.530
C11	C13	1.610	1.530
C11	N9	1.473	1.472
C14	C17	1.572	1.529
C14	H142	1.114	1.089
C14	H141	1.115	1.090
C13	H133	1.115	1.089
C13	H132	1.114	1.089
C13	H131	1.115	1.090
N9	C6	1.343	1.382
N9	H9	1.020	0.970
C6	N4	1.417	1.330
N4	C1	1.312	1.319
C1	N5	1.325	1.368
N5	H52	1.020	0.970
N5	H51	1.020	0.971
C17	C18	1.506	1.506
C17	H172	1.115	1.090
C17	H171	1.114	1.089
C18	C19	1.383	1.382
C18	C23	1.413	1.383
C19	C20	1.397	1.382
C19	H19	1.103	1.080
C20	C21	1.403	1.381
C20	H20	1.102	1.081
C21	C22	1.399	1.383
C21	H21	1.103	1.080
C22	C23	1.399	1.383
C22	H22	1.104	1.079
C23	H23	1.103	1.080

Bond Angles for 87Y

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	N2	C1	122.1	120.5
C3	N2	H2	119.7	119.8
N2	C3	O8	117.0	120.8
N2	C3	C7	115.1	118.3
C1	N2	H2	118.2	119.7
N2	C1	N4	121.8	121.8
N2	C1	N5	119.5	119.1
O8	C3	C7	127.7	120.9
C3	C7	N10	119.5	121.4
C3	C7	C6	123.3	118.5
N10	C7	C6	116.9	120.0
C7	N10	C12	121.5	121.8
C7	C6	N9	126.5	118.3
C7	C6	N4	114.1	120.0
N10	C12	C15	126.8	119.3
N10	C12	C11	123.9	121.5
C15	C12	C11	108.7	119.3
C12	C15	O16	100.1	109.5
C12	C15	H152	115.8	109.5
C12	C15	H151	115.8	109.5
C12	C11	C14	119.4	109.5
C12	C11	C13	97.8	109.5
C12	C11	N9	112.6	109.1
O16	C15	H152	115.8	109.5
O16	C15	H151	115.8	109.4
C15	O16	H16	100.1	106.8
H152	C15	H151	94.7	109.5
C14	C11	C13	106.4	109.6
C14	C11	N9	116.1	109.5
C11	C14	C17	103.3	109.4
C11	C14	H142	114.6	109.5
C11	C14	H141	114.5	109.4
C13	C11	N9	100.5	109.6
C11	C13	H133	97.8	109.5
C11	C13	H132	116.8	109.4
C11	C13	H131	116.7	109.4
C11	N9	C6	118.4	117.4
C11	N9	H9	109.0	121.3
C17	C14	H142	114.6	109.5
C17	C14	H141	114.6	109.5
C14	C17	C18	105.0	109.5
C14	C17	H172	113.9	109.5
C14	C17	H171	113.9	109.5
H142	C14	H141	95.9	109.5
H133	C13	H132	116.8	109.5
H133	C13	H131	116.7	109.5
H132	C13	H131	93.6	109.5
C6	N9	H9	108.9	121.4
N9	C6	N4	119.4	121.7
C6	N4	C1	122.9	120.9
N4	C1	N5	118.7	119.1
C1	N5	H52	119.5	120.0
C1	N5	H51	108.7	120.0
H52	N5	H51	108.6	120.0
C18	C17	H172	113.9	109.4
C18	C17	H171	113.9	109.5
C17	C18	C19	123.7	120.1
C17	C18	C23	118.3	120.0
H172	C17	H171	96.6	109.4
C19	C18	C23	118.0	120.0
C18	C19	C20	125.9	120.0
C18	C19	H19	116.4	119.9
C18	C23	C22	115.8	120.0
C18	C23	H23	122.5	120.0
C20	C19	H19	117.7	120.1
C19	C20	C21	116.9	120.1
C19	C20	H20	121.4	120.0
C21	C20	H20	121.8	120.0
C20	C21	C22	117.1	120.0
C20	C21	H21	121.6	120.0
C22	C21	H21	121.3	120.0
C21	C22	C23	126.2	120.0
C21	C22	H22	116.9	120.1
C23	C22	H22	116.9	120.0
C22	C23	H23	121.6	120.0

Torsion Angles for 87Y

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	N2	C3	H2	180.0	179.9
C3	N2	C1	N4	4.1	0.3
C3	N2	C1	N5	182.0	180.2
O8	C3	N2	C7	174.5	179.9
N2	C3	C7	N10	175.9	179.4
N2	C3	C7	C6	350.2	359.6
C3	N2	C1	H2	180.0	180.1
C1	N2	C3	O8	177.8	179.9
C1	N2	C3	C7	3.3	360.0
C6	N4	C1	N2	354.3	360.0
N4	C1	N2	N5	182.1	180.1
N2	C1	N5	H52	180.0	180.1
N2	C1	N5	H51	54.7	360.0
C3	N2	H2	C1	180.0	179.9
H2	N2	C3	O8	357.8	360.0
H2	N2	C3	C7	183.3	180.0
H2	N2	C1	N4	184.1	180.2
H2	N2	C1	N5	2.0	0.2
O8	C3	N2	C1	177.8	179.9
O8	C3	N2	H2	357.8	360.0
N2	C3	O8	C7	186.3	180.1
O8	C3	C7	N10	2.1	359.5
O8	C3	C7	C6	176.4	179.6
C7	C3	N2	C1	3.3	360.0
C7	C3	N2	H2	183.3	180.0
N2	C3	C7	O8	173.8	179.9
N10	C7	C3	C6	185.7	179.9
C3	C7	N10	C12	172.5	193.3
C3	C7	C6	N9	187.9	180.8
C3	C7	C6	N4	8.3	0.7
C3	C7	N10	C6	174.6	180.1
N10	C7	C6	N9	2.3	0.9
N10	C7	C6	N4	182.7	180.8
C7	N10	C12	C15	188.2	181.8
C7	N10	C12	C11	358.5	1.6
C3	C7	C6	N10	185.6	179.9
C6	C7	N10	C12	357.9	13.2
C11	N9	C6	C7	1.2	331.3
C7	C6	N9	H9	126.5	151.3
N9	C6	C7	N4	179.5	180.1
C7	C6	N4	C1	359.4	359.5
C12	N10	C7	C6	357.9	13.2
C15	C12	N10	C11	189.7	180.2
N10	C12	C15	O16	334.0	360.0
N10	C12	C15	H152	99.2	120.0
N10	C12	C15	H151	208.7	240.0
N10	C12	C11	C14	146.0	93.0
N10	C12	C11	C13	259.8	213.2
N10	C12	C11	N9	4.6	333.1
N10	C12	C15	C11	171.5	179.8
C15	C12	C11	C14	317.8	272.7
C15	C12	C11	C13	71.6	33.0
C15	C12	C11	N9	176.5	152.9
O16	C15	C12	H152	234.7	240.0
O16	C15	C12	H151	125.3	120.0
C12	C15	O16	H16	180.0	180.0
H152	C15	C12	H151	250.5	240.0
N10	C12	C11	C15	188.2	180.2
C11	C12	C15	O16	162.5	180.2
C11	C12	C15	H152	287.7	300.2
C11	C12	C15	H151	37.2	60.2
C14	C11	C12	C13	246.2	239.8
C14	C11	C12	N9	141.3	119.9
C12	C11	C14	C17	292.0	180.2
C12	C11	C14	H142	57.2	300.2
C12	C11	C14	H141	166.7	60.2
C13	C11	C12	N9	255.1	240.1
C12	C11	C13	H133	179.9	59.9
C12	C11	C13	H132	305.3	179.9
C12	C11	C13	H131	54.8	299.8
C12	C11	N9	C6	355.7	39.6
C12	C11	N9	H9	230.4	219.6
O16	C15	C12	C11	162.5	180.2
C12	C15	O16	H152	125.2	120.0
C12	C15	O16	H151	234.7	240.0
H152	C15	O16	H151	109.5	120.0
H152	C15	C12	C11	287.7	300.2
C12	C15	H152	O16	243.2	240.0
C12	C15	H152	H151	121.6	120.0
O16	C15	H152	H151	238.4	240.0
H152	C15	O16	H16	54.8	60.0
H151	C15	C12	C11	37.2	60.2
C12	C15	H151	O16	116.8	120.0
C12	C15	H151	H152	238.4	240.0
O16	C15	H151	H152	121.6	120.0
H151	C15	O16	H16	305.3	300.0
H16	O16	C15	H152	54.8	60.0
H16	O16	C15	H151	305.3	300.0
C12	C11	C14	C13	109.1	120.2
C12	C11	C14	N9	219.9	240.4
C13	C11	C14	N9	110.8	120.2
C14	C11	C13	H133	303.8	180.0
C14	C11	C13	H132	69.1	300.0
C14	C11	C13	H131	178.6	60.0
C14	C11	N9	C6	212.9	279.8
C14	C11	N9	H9	87.7	99.8
C17	C14	C11	H142	234.7	240.0
C17	C14	C11	H141	125.2	119.9
C11	C14	C17	C18	197.3	180.1
C11	C14	C17	H172	322.6	300.0
C11	C14	C17	H171	72.0	60.0
H142	C14	C11	H141	250.5	240.0
C12	C11	C13	C14	236.2	239.9
C12	C11	C13	N9	114.8	119.7
C14	C11	C13	N9	238.6	239.8
C13	C11	C14	C17	182.8	60.0
C13	C11	C14	H142	308.1	180.0
C13	C11	C14	H141	57.6	300.0
C13	C11	N9	C6	98.7	159.5
C13	C11	N9	H9	333.5	339.5
H133	C13	C11	H132	234.7	240.0
H133	C13	C11	H131	125.2	120.0
H132	C13	C11	H131	250.5	240.0
C7	C6	N9	C11	1.2	331.3
C12	C11	N9	C14	142.7	119.8
C12	C11	N9	C13	256.9	240.1
C14	C11	N9	C13	114.2	120.2
N9	C11	C14	C17	72.0	299.8
N9	C11	C14	H142	197.3	59.8
N9	C11	C14	H141	306.8	179.8
N9	C11	C13	H133	65.1	300.2
N9	C11	C13	H132	190.5	60.2
N9	C11	C13	H131	300.0	180.2
C6	N9	C11	H9	125.2	180.0
C11	N9	C6	N4	180.7	151.3
C17	C14	C11	C13	182.8	60.0
C17	C14	C11	N9	72.0	299.8
C11	C14	C17	H142	125.3	120.0
C11	C14	C17	H141	234.8	240.1
H142	C14	C17	H141	109.5	120.1
C18	C17	C14	H172	234.8	240.0
C18	C17	C14	H171	125.3	120.1
C14	C17	C18	C19	295.8	90.0
C14	C17	C18	C23	117.9	269.7
H172	C17	C14	H171	250.5	240.0
H142	C14	C11	C13	308.1	180.0
H142	C14	C11	N9	197.3	59.8
C11	C14	H142	C17	240.9	240.0
C11	C14	H142	H141	120.4	120.0
C17	C14	H142	H141	239.5	240.0
H142	C14	C17	C18	72.0	60.1
H142	C14	C17	H172	197.3	180.0
H142	C14	C17	H171	306.7	300.0
H141	C14	C11	C13	57.6	300.0
H141	C14	C11	N9	306.8	179.8
C11	C14	H141	C17	119.1	119.9
C11	C14	H141	H142	239.5	240.0
C17	C14	H141	H142	120.5	120.1
H141	C14	C17	C18	322.5	300.0
H141	C14	C17	H172	87.8	59.9
H141	C14	C17	H171	197.2	179.9
H133	C13	C11	N9	65.1	300.2
C11	C13	H133	H132	125.3	120.0
C11	C13	H133	H131	234.8	240.0
H132	C13	H133	H131	109.4	120.1
H132	C13	C11	N9	190.5	60.2
C11	C13	H132	H133	244.9	240.0
C11	C13	H132	H131	122.5	119.9
H133	C13	H132	H131	237.6	239.9
H131	C13	C11	N9	300.0	180.2
C11	C13	H131	H133	115.0	120.0
C11	C13	H131	H132	237.5	240.1
H133	C13	H131	H132	122.5	120.0
C7	C6	N9	N4	180.5	179.9
C11	N9	C6	H9	234.7	180.0
N9	C6	N4	C1	179.9	179.5
C11	N9	H9	C6	130.6	180.0
H9	N9	C6	N4	306.0	331.4
N2	C1	N4	C6	354.3	360.0
C7	C6	N4	N9	179.6	180.1
N4	C6	N9	H9	306.0	331.4
C6	N4	C1	N5	176.3	180.0
N4	C1	N2	H2	184.1	180.2
N2	C1	N4	N5	178.0	179.9
N4	C1	N5	H52	358.0	0.0
N4	C1	N5	H51	232.7	179.9
N5	C1	N2	H2	2.0	0.2
N2	C1	N5	N4	182.0	180.1
H52	N5	C1	H51	125.3	180.1
C1	N5	H52	H51	234.7	179.9
C1	N5	H51	H52	131.4	180.1
C18	C17	C14	H142	72.0	60.1
C18	C17	C14	H141	322.5	300.0
C14	C17	C18	H172	125.2	120.0
C14	C17	C18	H171	234.7	240.0
H172	C17	C18	H171	109.5	120.0
C19	C18	C17	C23	177.8	180.3
C17	C18	C19	C20	181.4	180.0
C17	C18	C19	H19	1.4	360.0
C17	C18	C23	C22	179.0	179.8
C17	C18	C23	H23	358.9	0.3
H172	C17	C14	H142	197.3	180.0
H172	C17	C14	H141	87.8	59.9
C14	C17	H172	C18	239.7	240.0
C14	C17	H172	H171	119.8	120.0
C18	C17	H172	H171	240.2	240.0
H172	C17	C18	C19	170.5	330.0
H172	C17	C18	C23	352.7	149.7
H171	C17	C14	H142	306.7	300.0
H171	C17	C14	H141	197.2	179.9
C14	C17	H171	C18	120.4	120.0
C14	C17	H171	H172	240.2	240.0
C18	C17	H171	H172	119.8	120.0
H171	C17	C18	C19	61.0	210.0
H171	C17	C18	C23	243.2	29.7
C19	C18	C17	H172	170.5	330.0
C19	C18	C17	H171	61.0	210.0
C17	C18	C19	C23	182.2	179.7
C19	C18	C23	C22	1.0	359.5
C19	C18	C23	H23	181.0	180.0
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	C21	0.2	0.0
C18	C19	C20	H20	180.2	180.0
C23	C18	C17	H172	352.7	149.7
C23	C18	C17	H171	243.2	29.7
C17	C18	C23	C19	177.9	180.3
C23	C18	C19	C20	359.2	0.3
C23	C18	C19	H19	179.2	180.3
C21	C22	C23	C18	359.2	0.5
C18	C23	C22	H22	179.2	180.3
C22	C23	C18	H23	180.0	179.5
C20	C19	C18	C23	359.2	0.3
C18	C19	C20	H19	180.0	180.0
C21	C20	C19	H20	180.0	180.1
C19	C20	C21	C22	0.1	359.9
C19	C20	C21	H21	180.1	179.9
H19	C19	C18	C23	179.2	180.3
C18	C19	H19	C20	180.0	180.0
H19	C19	C20	C21	180.1	180.0
H19	C19	C20	H20	0.1	359.9
C21	C20	C19	H19	180.1	180.0
C19	C20	C21	H20	180.0	179.9
C22	C21	C20	H21	180.0	180.0
C20	C21	C22	C23	0.2	359.8
C20	C21	C22	H22	180.2	180.0
H20	C20	C19	H19	0.1	359.9
C19	C20	H20	C21	180.0	180.1
H20	C20	C21	C22	180.1	180.0
H20	C20	C21	H21	0.1	360.0
C18	C23	C22	C21	359.2	0.5
C22	C21	C20	H20	180.1	180.0
C20	C21	C22	H21	180.0	180.0
C23	C22	C21	H22	180.0	179.8
C21	C22	C23	H23	179.2	180.0
H21	C21	C20	H20	0.1	360.0
C20	C21	H21	C22	180.0	180.0
H21	C21	C22	C23	180.2	179.8
H21	C21	C22	H22	0.2	0.0
C18	C23	C22	H23	180.0	180.5
C23	C22	C21	H21	180.2	179.8
C21	C22	C23	H22	180.0	180.2
H22	C22	C21	H21	0.2	0.0
C21	C22	H22	C23	180.0	179.8
H22	C22	C23	H23	359.2	359.8
C18	C23	H23	C22	180.0	179.5
H23	C23	C22	H22	359.2	359.8