PDB Chemical Component 86M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 86M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C10 C11 1.340 1.350
C10 C9 1.454 1.405
C11 N1 1.388 1.364
C9 C8 1.357 1.360
C15 N3 1.347 1.317
C15 C6 1.395 1.387
N3 C2 1.345 1.323
N1 C14 1.392 1.371
N1 C12 1.371 1.369
O2 C6 1.386 1.357
O2 C7 1.429 1.429
C8 C14 1.445 1.410
C8 C7 1.523 1.506
C6 C4 1.425 1.407
C14 N2 1.319 1.326
C12 C13 1.374 1.351
C2 O1 1.396 1.357
C2 C3 1.398 1.385
O1 C1 1.425 1.429
C4 C3 1.415 1.402
C4 C5 1.521 1.471
N2 C13 1.371 1.335
C10 C10A 1.080 1.080
C11 C11A 1.080 1.080
C12 C12A 1.080 1.080
C13 C13A 1.080 1.080
C15 C15A 1.080 1.080
C1 HC1A 1.100 1.089
C1 HC1C 1.100 1.091
C1 HC1B 1.100 1.090
C3 HC3A 1.080 1.080
C5 HC5B 1.079 1.080
C7 HC7B 1.100 1.090
C7 HC7A 1.100 1.090
C9 HC9A 1.080 1.079
C5 O3 2.130 1.213

Bond Angles for 86M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C11 C10 C9 119.3 120.3
C10 C11 N1 118.8 120.6
C11 C10 C10A 120.4 119.9
C10 C11 C11A 120.6 119.7
C10 C9 C8 123.0 119.7
C9 C10 C10A 120.4 119.8
C10 C9 HC9A 118.5 120.1
C11 N1 C14 123.7 120.4
C11 N1 C12 129.2 132.6
N1 C11 C11A 120.6 119.7
C6 C15 N3 125.6 120.9
C15 N3 C2 117.6 122.2
N3 C15 C15A 117.2 119.6
C15 C6 C4 116.3 118.9
C6 C15 C15A 117.2 119.5
N1 C14 N2 110.9 108.0
N1 C12 C12A 127.4 126.3
O2 C7 HC7B 108.9 109.5
O2 C7 HC7A 108.9 109.5
C8 C14 N2 130.8 132.3
C8 C7 HC7B 108.9 109.4
C8 C7 HC7A 108.9 109.5
C13 C12 C12A 127.3 126.5
C12 C13 C13A 124.4 125.7
C2 C3 HC3A 120.2 120.5
O1 C1 HC1A 109.5 109.5
O1 C1 HC1C 109.5 109.5
O1 C1 HC1B 109.5 109.5
C4 C3 HC3A 120.3 120.5
C4 C5 HC5B 97.8 120.0
C4 C5 O3 164.5 120.0
N2 C13 C13A 124.3 125.7
HC1A C1 HC1C 109.4 109.4
HC1A C1 HC1B 109.5 109.5
HC1C C1 HC1B 109.4 109.5
HC5B C5 O3 97.8 120.0
HC7B C7 HC7A 109.5 109.4

Torsion Angles for 86M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C11 C10 C9 C8 359.9 0.1
C9 C10 C11 C10A 180.0 180.2
C11 C10 C9 HC9A 179.9 180.0
C10 C11 N1 C14 359.9 0.0
C10 C11 N1 C12 180.0 180.0
N1 C11 C10 C11A 180.0 180.0
C9 C10 C11 N1 0.1 360.0
C11 C10 C9 C10A 180.0 179.8
C9 C10 C11 C11A 180.1 180.0
N1 C11 C10 C9 0.1 360.0
N1 C11 C10 C10A 180.1 179.8
C10 C11 N1 C11A 180.0 180.0
C11 N1 C14 N2 180.0 180.0
C11 N1 C12 C12A 360.0 0.1
C8 C9 C10 C10A 179.9 180.3
C10 C9 C8 HC9A 180.0 179.9
C9 C8 C14 N2 180.0 180.1
C9 C8 C7 HC7B 239.6 239.9
C9 C8 C7 HC7A 120.3 119.9
N3 C15 C6 C4 359.9 360.0
C6 C15 N3 C15A 180.0 179.8
C6 C15 N3 C2 0.0 360.0
N3 C15 C6 C15A 180.0 180.2
C2 N3 C15 C15A 180.0 180.2
N3 C2 C3 HC3A 180.5 179.9
C11 N1 C14 C12 180.0 180.0
C14 N1 C11 C11A 179.9 180.0
C14 N1 C12 C12A 180.0 180.0
C8 C14 N1 N2 180.0 180.0
C11 N1 C12 C14 180.0 180.0
C12 N1 C11 C11A 360.0 359.9
C13 C12 N1 C12A 180.0 180.0
N1 C12 C13 C13A 180.0 180.0
O2 C6 C15 N3 180.0 180.0
O2 C6 C15 C15A 0.0 359.8
C8 C7 O2 HC7B 239.6 240.0
C8 C7 O2 HC7A 120.3 120.1
HC7B C7 O2 HC7A 240.7 240.1
C10 C9 C8 C14 0.0 359.9
C11 N1 C14 C8 360.0 360.0
N1 C14 C8 N2 180.0 180.0
C10 C9 C8 C7 180.1 180.0
O2 C7 C8 HC7B 120.3 120.0
O2 C7 C8 HC7A 239.6 240.0
C7 C8 C14 N2 360.0 360.0
HC7B C7 C8 HC7A 119.3 119.9
C4 C6 C15 N3 359.9 360.0
C4 C6 C15 C15A 179.9 179.8
C6 C4 C3 HC3A 179.4 180.0
C6 C4 C5 HC5B 62.4 180.0
C6 C4 C5 O3 242.4 0.0
C14 N2 C13 C13A 180.0 180.0
C11 N1 C12 C13 180.0 180.1
N1 C12 C13 C12A 180.0 180.0
N2 C13 C12 C13A 180.0 180.0
C15 N3 C2 O1 180.0 180.0
C2 O1 C1 HC1A 180.0 180.0
C2 O1 C1 HC1C 300.0 300.0
C2 O1 C1 HC1B 60.0 60.0
C15 N3 C2 C3 359.8 0.1
C4 C3 C2 HC3A 180.0 180.0
HC1A C1 O1 HC1C 240.0 240.0
HC1A C1 O1 HC1B 120.0 120.0
HC1C C1 O1 HC1B 240.0 240.0
C15 C6 C4 C3 0.4 0.0
C2 C3 C4 HC3A 180.0 180.0
C15 C6 C4 C5 179.9 180.0
C5 C4 C3 HC3A 359.8 0.0
HC5B C5 C4 O3 180.0 180.0
N2 C13 C12 C12A 180.0 180.0
C12 C13 N2 C13A 180.0 180.0
C11 C10 C10A C9 180.0 180.2
C10A C10 C11 N1 180.1 179.8
C10A C10 C11 C11A 0.1 359.8
C10A C10 C9 C8 179.9 180.3
C10A C10 C9 HC9A 359.9 0.2
C11A C11 C10 C9 180.1 180.0
C10 C11 C11A N1 180.0 180.0
C11A C11 C10 C10A 0.1 359.8
C11A C11 N1 C14 179.9 180.0
C11A C11 N1 C12 360.0 359.9
C12A C12 C13 C13A 360.0 360.0
C13A C13 C12 C12A 360.0 360.0
C6 C15 C15A N3 180.0 180.2
C15A C15 N3 C2 180.0 180.2
C15A C15 C6 C4 179.9 179.8
O1 C1 HC1A HC1C 120.0 120.0
O1 C1 HC1A HC1B 240.0 240.0
HC1C C1 HC1A HC1B 119.9 120.0
O1 C1 HC1C HC1A 239.9 240.0
O1 C1 HC1C HC1B 120.0 120.0
HC1A C1 HC1C HC1B 240.1 240.0
O1 C1 HC1B HC1A 120.1 120.1
O1 C1 HC1B HC1C 240.0 240.0
HC1A C1 HC1B HC1C 119.9 119.9
C4 C5 HC5B O3 180.0 180.0
O2 C7 HC7B HC7A 118.9 120.0
C8 C7 HC7B HC7A 241.1 240.0
O2 C7 HC7A HC7B 241.1 240.0
C8 C7 HC7A HC7B 118.9 120.0
C10 C9 HC9A C8 180.0 180.1
HC9A C9 C10 C10A 359.9 0.2
C4 C5 O3 HC5B 180.0 180.0