PDB Chemical Component 85Y

Ideal Model

Chemical Description

Name 2'-deoxy-5-{[(naphthalen-2-yl)methyl]carbamoyl}uridine 5'-(dihydrogen phosphate)
Formula C21 H22 N3 O9 P
Formal charge 0
Molecular weight 491.388 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 56
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HOP3
Bond count 59
Aromatic bond count 11

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-{[(naphthalen-2-yl)methyl]carbamoyl}uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[5-(naphthalen-2-ylmethylcarbamoyl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccc4ccccc4c3)C(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccc4ccccc4c3)C(=O)NC2=O
Stereo SMILES (OpenEye) c1ccc2cc(ccc2c1)CNC(=O)C3=CN(C(=O)NC3=O)[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O
InChI descriptor InChI=1S/C21H22N3O9P/c25-16-8-18(33-17(16)11-32-34(29,30)31)24-10-15(20(27)23-21(24)28)19(26)22-9-12-5-6-13-3-1-2-4-14(13)7-12/h1-7,10,16-18,25H,8-9,11H2,(H,22,26)(H,23,27,28)(H2,29,30,31)/t16-,17+,18+/m0/s1
InChIKey descriptor OIDHQCJPEWHGIY-RCCFBDPRSA-N

Status Information

Last modified 2018-08-13
Created 2017-01-06
Release status REL
Model PDB code 5UC6
Processing site RCSB