Atom Nomenclature for 843

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 843

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
P7 P7
O8 O8
O9 O9
O10 O10
C11 C11
C12 C12
C13 C13
N14 N14
N15 N15
C16 C16
C17 C17
O18 O18
O19 O19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
N25 N25
C26 C26
C27 C27
C28 C28
O29 O29
O30 O30
C54 C54
C55 C55
C56 C56
C57 C57
C58 C58
C63 C63
C64 C64
C65 C65
C66 C66
C67 C67
C68 C68
H1 H1
H2 H2
H4 H4
H5 H5
H8 H8
H10 H10
H111 1H11
H112 2H11
H12 H12
H14 H14
H15 H15
H171 1H17
H172 2H17
H173 3H17
H20 H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H231 1H23
H232 2H23
H241 1H24
H242 2H24
H271 1H27
H272 2H27
H54 H54
H55 H55
H57 H57
H58 H58
H64 H64
H65 H65
H66 H66
H67 H67
H68 H68