Atom Nomenclature for 83G

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 83G

Atom Name (V3) Atom Name (V2)
C14 C1
C11 C2
C10 C3
C12 C4
C01 C5
C03 C6
C04 C7
C05 C8
C07 C9
C08 C10
C17 C11
C18 C12
C20 C13
C21 C14
C22 C15
C23 C16
C25 C17
C26 C18
C27 C19
C28 C20
C29 C21
C30 C22
N06 N1
N09 N2
N16 N3
N19 N4
O02 O1
O13 O2
O15 O3
O24 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22