PDB Chemical Component 829

Ideal Model

Chemical Description

Name 5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine
Formula C15 H17 N5 O5
Formal charge 0
Molecular weight 347.326 g/mol
Component type NON-POLYMER

Chemical features

Atom count 42
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 44
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine
Systematic name (OpenEye OEToolkits) N-[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]pyridine-4-carboxamide

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CNC(=O)c3ccncc3)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)c3ccncc3)[CH](O)[CH]2O
Stereo SMILES (OpenEye) c1cnccc1C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O
InChI descriptor InChI=1S/C15H17N5O5/c16-10-3-6-20(15(24)19-10)14-12(22)11(21)9(25-14)7-18-13(23)8-1-4-17-5-2-8/h1-6,9,11-12,14,21-22H,7H2,(H,18,23)(H2,16,19,24)/t9-,11-,12-,14-/m1/s1
InChIKey descriptor XQXWUTWGJVGDNS-XIDUGBJDSA-N

Status Information

Last modified 2011-06-04
Created 2009-10-28
Release status REL
Model PDB code 3KE1
Processing site RCSB