PDB Chemical Component 829
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 829
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
N1 |
1.356 |
1.363 |
| N1 |
C1' |
1.499 |
1.464 |
| N1 |
C2 |
1.363 |
1.346 |
| N3 |
C2 |
1.366 |
1.332 |
| C2 |
O2 |
1.251 |
1.220 |
| C4 |
N3 |
1.351 |
1.327 |
| C5 |
C4 |
1.390 |
1.410 |
| N4 |
C4 |
1.355 |
1.376 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C5 |
C6 |
1.394 |
1.354 |
| C5 |
H5 |
1.079 |
1.080 |
| C6 |
H6 |
1.081 |
1.081 |
| O15 |
C07 |
1.224 |
1.216 |
| C13 |
C07 |
1.531 |
1.482 |
| C07 |
N5' |
1.351 |
1.348 |
| C09 |
C08 |
1.409 |
1.381 |
| C13 |
C08 |
1.410 |
1.399 |
| C08 |
H08 |
1.080 |
1.080 |
| N10 |
C09 |
1.356 |
1.318 |
| C09 |
H09 |
1.080 |
1.079 |
| C2' |
C1' |
1.542 |
1.545 |
| C1' |
O4' |
1.446 |
1.445 |
| C1' |
H1' |
1.100 |
1.090 |
| C11 |
N10 |
1.353 |
1.318 |
| C11 |
C12 |
1.403 |
1.381 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
C13 |
1.407 |
1.397 |
| C12 |
H12 |
1.080 |
1.080 |
| C3' |
C2' |
1.526 |
1.545 |
| C2' |
O2' |
1.441 |
1.429 |
| C2' |
H2' |
1.101 |
1.090 |
| O2' |
HO2' |
0.950 |
0.966 |
| O3' |
C3' |
1.439 |
1.428 |
| C3' |
C4' |
1.520 |
1.545 |
| C3' |
H3' |
1.100 |
1.089 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
C4' |
1.555 |
1.531 |
| C4' |
O4' |
1.453 |
1.445 |
| C4' |
H4' |
1.100 |
1.091 |
| N5' |
C5' |
1.469 |
1.465 |
| C5' |
H5' |
1.100 |
1.089 |
| C5' |
H5'A |
1.101 |
1.090 |
| N5' |
HN5' |
1.000 |
0.969 |
Bond Angles for 829
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C1' |
119.9 |
119.8 |
| C2 |
N1 |
C1' |
123.1 |
119.8 |
| N1 |
C1' |
O4' |
107.7 |
110.4 |
| N1 |
C1' |
H1' |
104.5 |
110.3 |
| N1 |
C2 |
O2 |
121.9 |
119.5 |
| HN4 |
N4 |
HN4A |
120.0 |
120.0 |
| C6 |
C5 |
H5 |
120.5 |
120.5 |
| C5 |
C6 |
H6 |
118.7 |
120.4 |
| O15 |
C07 |
N5' |
117.8 |
120.0 |
| C13 |
C07 |
N5' |
126.0 |
120.0 |
| C07 |
N5' |
C5' |
129.6 |
120.0 |
| C07 |
N5' |
HN5' |
115.2 |
120.0 |
| C09 |
C08 |
H08 |
119.9 |
120.5 |
| C13 |
C08 |
H08 |
119.8 |
120.5 |
| N10 |
C09 |
H09 |
119.8 |
119.6 |
| C2' |
C1' |
O4' |
104.6 |
104.8 |
| C2' |
C1' |
H1' |
107.5 |
110.4 |
| O4' |
C1' |
H1' |
116.5 |
110.3 |
| C1' |
O4' |
C4' |
111.2 |
105.3 |
| C12 |
C11 |
H11 |
119.5 |
119.6 |
| C11 |
C12 |
C13 |
120.2 |
119.1 |
| C11 |
C12 |
H12 |
119.9 |
120.5 |
| C13 |
C12 |
H12 |
119.9 |
120.5 |
| C3' |
C2' |
H2' |
114.5 |
110.6 |
| O2' |
C2' |
H2' |
107.4 |
110.4 |
| C2' |
O2' |
HO2' |
109.5 |
114.0 |
| O3' |
C3' |
C4' |
111.7 |
110.5 |
| O3' |
C3' |
H3' |
102.1 |
110.6 |
| C4' |
C3' |
H3' |
115.1 |
110.5 |
| C3' |
C4' |
O4' |
105.3 |
104.8 |
| C3' |
C4' |
H4' |
114.1 |
110.4 |
| C5' |
C4' |
H4' |
97.1 |
110.4 |
| O4' |
C4' |
H4' |
106.8 |
110.3 |
| N5' |
C5' |
H5' |
106.0 |
109.5 |
| N5' |
C5' |
H5'A |
106.0 |
109.5 |
| H5' |
C5' |
H5'A |
112.7 |
109.5 |
Torsion Angles for 829
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C1' |
177.1 |
179.6 |
| C6 |
N1 |
C1' |
O4' |
62.9 |
233.2 |
| C6 |
N1 |
C1' |
H1' |
187.3 |
355.5 |
| C1' |
N1 |
C2 |
O2 |
357.8 |
359.9 |
| C2' |
C1' |
N1 |
O4' |
243.0 |
244.6 |
| C2' |
C1' |
N1 |
H1' |
118.5 |
122.4 |
| O4' |
C1' |
N1 |
H1' |
235.6 |
237.8 |
| N1 |
C1' |
O4' |
C4' |
235.5 |
200.7 |
| C6 |
N1 |
C2 |
C1' |
183.0 |
180.4 |
| C2 |
N1 |
C1' |
O4' |
246.0 |
53.6 |
| C2 |
N1 |
C1' |
H1' |
10.4 |
175.8 |
| N3 |
C2 |
N1 |
C1' |
178.3 |
180.0 |
| O2 |
C2 |
N1 |
C1' |
357.8 |
359.9 |
| C5 |
C6 |
N1 |
C1' |
181.5 |
179.7 |
| H5 |
C5 |
C6 |
H6 |
0.7 |
359.7 |
| H6 |
C6 |
N1 |
C1' |
1.5 |
0.3 |
| H6 |
C6 |
C5 |
H5 |
0.7 |
359.7 |
| C13 |
C07 |
O15 |
N5' |
181.4 |
180.0 |
| O15 |
C07 |
N5' |
C5' |
122.9 |
0.0 |
| O15 |
C07 |
N5' |
HN5' |
302.9 |
180.1 |
| O15 |
C07 |
C13 |
N5' |
178.5 |
180.0 |
| C13 |
C07 |
N5' |
C5' |
301.4 |
180.0 |
| C13 |
C07 |
N5' |
HN5' |
121.4 |
0.1 |
| C07 |
N5' |
C5' |
H5' |
147.0 |
60.1 |
| C07 |
N5' |
C5' |
H5'A |
27.0 |
300.0 |
| C13 |
C08 |
C09 |
H08 |
180.0 |
180.3 |
| C08 |
C13 |
C07 |
N5' |
38.2 |
359.5 |
| C09 |
C08 |
C13 |
H08 |
180.0 |
179.7 |
| N10 |
C09 |
C08 |
H08 |
179.5 |
180.0 |
| H09 |
C09 |
C08 |
H08 |
359.5 |
360.0 |
| N1 |
C1' |
C2' |
O4' |
118.7 |
118.8 |
| N1 |
C1' |
C2' |
H1' |
243.1 |
237.7 |
| O4' |
C1' |
C2' |
H1' |
124.4 |
118.8 |
| C2' |
C1' |
O4' |
C4' |
0.1 |
319.5 |
| N1 |
C1' |
O4' |
H1' |
116.9 |
122.2 |
| C2' |
C1' |
O4' |
H1' |
241.5 |
241.1 |
| C3' |
C4' |
O4' |
C1' |
21.1 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
259.4 |
281.6 |
| N1 |
C1' |
H1' |
O4' |
241.4 |
237.8 |
| C2' |
C1' |
H1' |
O4' |
116.9 |
115.4 |
| H1' |
C1' |
O4' |
C4' |
118.6 |
78.4 |
| C11 |
N10 |
C09 |
H09 |
180.2 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
179.7 |
| H11 |
C11 |
C12 |
C13 |
180.9 |
179.8 |
| H11 |
C11 |
C12 |
H12 |
0.9 |
0.1 |
| C12 |
C13 |
C07 |
N5' |
216.1 |
180.0 |
| C12 |
C13 |
C08 |
H08 |
180.9 |
179.8 |
| C13 |
C12 |
C11 |
H11 |
180.9 |
179.8 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.3 |
| H12 |
C12 |
C11 |
H11 |
0.9 |
0.1 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
179.7 |
| C3' |
C2' |
C1' |
O4' |
338.8 |
23.9 |
| C3' |
C2' |
C1' |
H1' |
214.4 |
265.1 |
| O2' |
C2' |
C3' |
H2' |
119.3 |
122.6 |
| C3' |
C2' |
O2' |
HO2' |
295.3 |
294.7 |
| O2' |
C2' |
C1' |
O4' |
95.6 |
142.6 |
| O2' |
C2' |
C1' |
H1' |
331.2 |
23.8 |
| C3' |
C2' |
O2' |
H2' |
236.2 |
237.3 |
| H2' |
C2' |
C1' |
O4' |
215.2 |
265.2 |
| H2' |
C2' |
C1' |
H1' |
90.8 |
146.4 |
| H2' |
C2' |
O2' |
HO2' |
59.1 |
57.4 |
| HO2' |
O2' |
C2' |
H2' |
59.1 |
57.4 |
| O3' |
C3' |
C2' |
H2' |
274.4 |
237.3 |
| C4' |
C3' |
O3' |
H3' |
236.5 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
204.1 |
217.4 |
| O3' |
C3' |
C4' |
H4' |
320.8 |
336.2 |
| C1' |
O4' |
C4' |
C3' |
21.1 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
153.6 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
115.8 |
122.7 |
| C5' |
C4' |
C3' |
H4' |
110.0 |
122.4 |
| O4' |
C4' |
C3' |
H4' |
243.2 |
241.2 |
| H3' |
C3' |
C2' |
H2' |
30.2 |
0.1 |
| O3' |
C3' |
H3' |
C4' |
238.8 |
237.4 |
| H3' |
C3' |
C4' |
O4' |
88.3 |
94.7 |
| H3' |
C3' |
C4' |
H4' |
205.1 |
213.5 |
| HO3' |
O3' |
C3' |
C4' |
295.2 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
58.6 |
298.7 |
| C07 |
N5' |
C5' |
C4' |
267.0 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
315.1 |
335.9 |
| C3' |
C4' |
C5' |
H4' |
239.7 |
237.6 |
| O4' |
C4' |
C5' |
H4' |
114.0 |
122.2 |
| C4' |
O4' |
C1' |
H1' |
118.6 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
88.3 |
94.7 |
| C3' |
C4' |
O4' |
H4' |
121.7 |
118.9 |
| C5' |
C4' |
O4' |
H4' |
251.2 |
237.7 |
| H4' |
C4' |
C3' |
H3' |
205.1 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
244.1 |
244.6 |
| C07 |
N5' |
C5' |
HN5' |
180.0 |
180.1 |
| N5' |
C5' |
C4' |
H4' |
179.9 |
307.4 |
| H5' |
C5' |
N5' |
H5'A |
120.0 |
120.1 |
| H5' |
C5' |
C4' |
H4' |
299.9 |
67.3 |
| N5' |
C5' |
H5' |
H5'A |
244.5 |
239.9 |
| H5'A |
C5' |
C4' |
H4' |
59.9 |
187.3 |
| N5' |
C5' |
H5'A |
H5' |
115.5 |
120.0 |
| C07 |
N5' |
HN5' |
C5' |
180.0 |
179.9 |
| HN5' |
N5' |
C5' |
H5' |
327.0 |
240.0 |
| HN5' |
N5' |
C5' |
H5'A |
207.0 |
119.9 |