Atom Nomenclature for 812

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 812

Atom Name (V3) Atom Name (V2)
C1S C1S
N1T N1T
C1R C1R
C1Q C1Q
C1P C1P
C1O C1O
O1N O1N
C1K C1K
C1J C1J
C1I C1I
C1H C1H
C1M C1M
C1L C1L
N1 N1
C1G C1G
C1C C1C
C1D C1D
C1E C1E
C1F C1F
C1A C1A
C1B C1B
H1S H1S
H1SA H1SA
HN1T HN1T
H1R H1R
H1RA H1RA
H1Q H1Q
H1QA H1QA
H1P H1P
H1O H1O
H1OA H1OA
H1J H1J
H1I H1I
H1M H1M
H1L H1L
HN1 HN1
H1G H1G
H1GA H1GA
H1D H1D
H1E H1E
H1F H1F
H1A H1A
H1B H1B