Atom Nomenclature for 806

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 806

Atom Name (V3) Atom Name (V2)
N1 N1
C1 C1
N2 N2
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
N21 N21
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
O O
C41 C41
C42 C42
C43 C43
N41 N41
C44 C44
C45 C45
C46 C46
N42 N42
C47 C47
HN1 HN1
HN21 1HN2
HN22 2HN2
H3 H3
H5 H5
H7 H7
H8 H8
H10 H10
H11 H11
H121 1H12
H122 2H12
H25 H25
H26 H26
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H41 H41
H421 1H42
H422 2H42
H431 1H43
H432 2H43
H441 1H44
H442 2H44
H451 1H45
H452 2H45
HN42 HN42
H471 1H47
H472 2H47
H473 3H47