PDB Chemical Component 7YG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7YG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N2	1.484	1.469
N2	C3	1.484	1.469
N2	C4	1.487	1.469
C4	C5	1.516	1.530
C5	N6	1.478	1.465
N6	S7	1.714	1.655
S7	O8	1.454	1.421
S7	O9	1.452	1.420
S7	C10	1.800	1.763
C10	C11	1.382	1.384
C10	C15	1.383	1.383
C11	C12	1.377	1.380
C12	C13	1.387	1.394
C13	C14	1.388	1.393
C13	C16	1.456	1.483
C14	C15	1.378	1.381
C16	C17	1.381	1.399
C16	N21	1.341	1.326
C17	N18	1.340	1.318
N18	C19	1.344	1.328
C19	C20	1.393	1.405
C19	N31	1.400	1.381
C20	N21	1.345	1.330
C20	C22	1.483	1.477
C22	O23	1.223	1.216
C22	N24	1.378	1.347
N24	C25	1.402	1.399
C25	C26	1.382	1.393
C25	C30	1.382	1.388
C26	C27	1.383	1.386
C27	C28	1.383	1.383
C28	N29	1.342	1.319
N29	C30	1.344	1.318
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C1	H13C	1.100	1.090
C3	H31C	1.100	1.090
C3	H32C	1.100	1.090
C3	H33C	1.100	1.091
C4	H41C	1.100	1.090
C4	H42C	1.100	1.089
C5	H51C	1.100	1.090
C5	H52C	1.100	1.091
N6	H6	1.000	0.970
C11	H11	1.080	1.080
C15	H15	1.080	1.079
C12	H12	1.080	1.079
C14	H14	1.080	1.080
C17	H17	1.080	1.080
N31	H311	1.000	0.969
N31	H312	1.000	0.970
N24	H24	1.000	0.970
C26	H26	1.080	1.080
C30	H30	1.080	1.080
C27	H27	1.080	1.080
C28	H28	1.079	1.080

Bond Angles for 7YG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	N2	C3	113.9	111.0
C1	N2	C4	111.8	111.0
N2	C1	H11C	109.5	109.5
N2	C1	H12C	109.4	109.5
N2	C1	H13C	109.4	109.5
C3	N2	C4	114.1	111.0
N2	C3	H31C	109.5	109.5
N2	C3	H32C	109.4	109.5
N2	C3	H33C	109.4	109.5
N2	C4	C5	108.7	109.4
N2	C4	H41C	109.7	109.5
N2	C4	H42C	109.7	109.5
C4	C5	N6	112.1	109.5
C5	C4	H41C	109.6	109.5
C5	C4	H42C	109.7	109.5
C4	C5	H51C	108.8	109.5
C4	C5	H52C	108.8	109.4
C5	N6	S7	114.5	120.0
N6	C5	H51C	108.8	109.5
N6	C5	H52C	108.8	109.4
C5	N6	H6	108.2	120.0
N6	S7	O8	109.7	106.4
N6	S7	O9	109.9	106.5
N6	S7	C10	99.2	107.2
S7	N6	H6	108.2	120.0
O8	S7	O9	121.3	123.2
O8	S7	C10	109.0	106.4
O9	S7	C10	105.3	106.4
S7	C10	C11	119.6	119.8
S7	C10	C15	119.7	119.9
C11	C10	C15	120.6	120.3
C10	C11	C12	119.5	120.1
C10	C11	H11	120.3	120.0
C10	C15	C14	118.9	120.1
C10	C15	H15	120.5	119.9
C11	C12	C13	121.2	119.9
C12	C11	H11	120.3	119.9
C11	C12	H12	119.4	120.0
C12	C13	C14	118.1	119.8
C12	C13	C16	121.8	120.1
C13	C12	H12	119.4	120.1
C14	C13	C16	120.2	120.1
C13	C14	C15	121.6	119.9
C13	C14	H14	119.2	120.1
C13	C16	C17	122.8	120.0
C13	C16	N21	117.0	119.9
C14	C15	H15	120.5	120.0
C15	C14	H14	119.2	120.0
C17	C16	N21	120.1	120.1
C16	C17	N18	123.4	120.2
C16	C17	H17	118.3	119.9
C16	N21	C20	117.0	119.9
C17	N18	C19	116.6	120.1
N18	C17	H17	118.2	119.9
N18	C19	C20	120.2	119.8
N18	C19	N31	118.2	120.1
C20	C19	N31	121.6	120.0
C19	C20	N21	122.5	119.8
C19	C20	C22	122.1	120.1
C19	N31	H311	109.5	120.0
C19	N31	H312	109.4	120.0
N21	C20	C22	115.3	120.0
C20	C22	O23	121.6	120.0
C20	C22	N24	112.7	120.1
O23	C22	N24	125.6	120.0
C22	N24	C25	127.9	120.0
C22	N24	H24	116.1	120.0
N24	C25	C26	117.2	120.5
N24	C25	C30	124.6	120.5
C25	N24	H24	116.0	120.0
C26	C25	C30	118.3	119.0
C25	C26	C27	119.4	118.4
C25	C26	H26	120.3	120.8
C25	C30	N29	124.0	120.7
C25	C30	H30	118.0	119.7
C26	C27	C28	117.9	119.2
C27	C26	H26	120.3	120.8
C26	C27	H27	121.1	120.4
C27	C28	N29	124.4	120.9
C28	C27	H27	121.1	120.4
C27	C28	H28	117.8	119.5
C28	N29	C30	116.0	121.8
N29	C28	H28	117.8	119.5
N29	C30	H30	118.0	119.6
H11C	C1	H12C	109.5	109.5
H11C	C1	H13C	109.5	109.4
H12C	C1	H13C	109.5	109.5
H31C	C3	H32C	109.5	109.5
H31C	C3	H33C	109.5	109.4
H32C	C3	H33C	109.4	109.5
H41C	C4	H42C	109.4	109.5
H51C	C5	H52C	109.4	109.5
H311	N31	H312	109.5	120.0

Torsion Angles for 7YG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	N2	C1	C4	131.2	236.1
C1	N2	C3	H31C	180.0	63.9
C1	N2	C3	H32C	300.0	184.0
C1	N2	C3	H33C	60.0	304.0
C1	N2	C4	C5	235.3	66.0
C1	N2	C4	H41C	355.2	186.0
C1	N2	C4	H42C	115.4	306.1
H11C	C1	N2	H12C	240.0	240.0
H11C	C1	N2	H13C	120.0	120.0
H12C	C1	N2	H13C	240.0	240.0
C1	N2	C3	C4	229.9	124.0
C3	N2	C1	H11C	180.0	60.0
C3	N2	C1	H12C	300.0	180.0
C3	N2	C1	H13C	60.0	300.0
C3	N2	C4	C5	104.2	190.0
C3	N2	C4	H41C	224.1	310.0
C3	N2	C4	H42C	344.3	70.0
H31C	C3	N2	H32C	240.0	240.0
H31C	C3	N2	H33C	120.0	119.9
H32C	C3	N2	H33C	240.1	239.9
C1	N2	C4	C3	131.1	236.0
C4	N2	C1	H11C	48.8	183.9
C4	N2	C1	H12C	168.8	304.0
C4	N2	C1	H13C	288.8	64.0
C4	N2	C3	H31C	310.1	300.0
C4	N2	C3	H32C	70.1	60.0
C4	N2	C3	H33C	190.1	180.1
N2	C4	C5	N6	60.5	180.0
C5	C4	N2	H41C	240.1	240.0
C5	C4	N2	H42C	119.9	120.0
N2	C4	C5	H51C	180.9	300.0
N2	C4	C5	H52C	300.1	60.0
H41C	C4	N2	H42C	239.8	240.0
N2	C4	C5	H41C	119.9	120.0
N2	C4	C5	H42C	240.1	240.0
C4	C5	N6	S7	224.6	165.0
N6	C5	C4	H51C	239.6	240.0
N6	C5	C4	H52C	120.4	119.9
C4	C5	N6	H6	345.3	345.0
H41C	C4	C5	H42C	120.2	120.0
H51C	C5	C4	H52C	240.8	240.0
N6	C5	C4	H41C	300.6	60.0
N6	C5	C4	H42C	180.4	300.0
C4	C5	N6	H51C	120.4	120.0
C4	C5	N6	H52C	239.6	240.1
C5	N6	S7	O8	31.1	178.6
C5	N6	S7	O9	166.8	311.5
C5	N6	S7	C10	276.9	65.0
S7	N6	C5	H6	239.3	180.0
H51C	C5	N6	H52C	119.2	120.0
S7	N6	C5	H51C	104.2	44.9
S7	N6	C5	H52C	345.0	284.9
C5	N6	S7	H6	120.7	180.0
O8	S7	N6	O9	224.2	227.0
O8	S7	N6	C10	114.1	113.5
O9	S7	N6	C10	249.9	246.5
N6	S7	C10	C11	271.7	90.0
N6	S7	C10	C15	90.9	269.7
N6	S7	O8	O9	129.9	123.0
N6	S7	O8	C10	252.3	246.0
O8	S7	N6	H6	270.4	358.5
O9	S7	O8	C10	122.5	122.9
O8	S7	C10	C11	157.0	336.5
O8	S7	C10	C15	336.2	156.2
N6	S7	O9	O8	230.2	237.0
N6	S7	O9	C10	106.0	114.1
O9	S7	N6	H6	46.1	131.5
O8	S7	O9	C10	235.8	237.1
O9	S7	C10	C11	25.4	203.6
O9	S7	C10	C15	204.6	23.3
N6	S7	C10	O8	114.7	113.5
N6	S7	C10	O9	246.3	246.4
C10	S7	N6	H6	156.2	245.0
O8	S7	C10	O9	131.6	132.9
C11	C10	S7	C15	180.7	180.3
S7	C10	C11	C12	179.2	180.0
S7	C10	C11	H11	359.2	359.9
S7	C10	C15	C14	181.0	179.8
S7	C10	C15	H15	1.0	0.0
S7	C10	C11	C15	179.3	179.7
C11	C10	C15	C14	0.3	359.5
C11	C10	C15	H15	180.3	179.7
C10	C11	C12	C13	359.5	359.9
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	H12	179.6	179.9
S7	C10	C15	C11	180.7	180.3
C15	C10	C11	C12	359.9	0.3
C15	C10	C11	H11	179.9	180.3
C13	C14	C15	C10	0.1	0.5
C14	C15	C10	H15	180.0	179.8
C10	C15	C14	H14	180.1	180.3
C12	C11	C10	C15	359.9	0.3
C10	C11	C12	H11	180.0	179.9
C11	C12	C13	C14	0.8	0.0
C11	C12	C13	C16	180.9	180.0
C13	C12	C11	H12	180.0	180.0
C13	C12	C11	H11	179.5	180.0
C11	C12	C13	H12	180.0	180.0
C14	C13	C12	C16	180.0	180.0
C12	C13	C14	C15	359.3	359.8
C12	C13	C14	H14	179.3	180.0
C12	C13	C16	C17	20.6	5.0
C12	C13	C16	N21	202.2	184.8
C10	C15	C14	C13	0.1	0.5
C12	C13	C14	C16	180.0	180.0
C14	C13	C12	H12	180.8	180.0
C14	C13	C16	C17	200.6	185.0
C14	C13	C16	N21	22.2	4.8
C13	C14	C15	H15	180.1	180.3
C15	C14	C13	H14	180.0	179.8
C12	C13	C16	C14	180.0	180.0
C16	C13	C12	H12	0.8	0.0
C16	C13	C14	C15	179.3	179.8
C16	C13	C14	H14	359.3	360.0
C17	C16	C13	N21	178.3	180.2
C13	C16	C17	N18	184.3	180.0
C13	C16	C17	H17	4.3	0.0
C13	C16	N21	C20	178.4	179.8
C10	C15	C14	H15	180.0	180.2
C15	C14	C13	C16	179.3	179.8
C13	C14	C15	H14	180.0	180.2
C13	C16	C17	N21	181.7	179.8
C17	C16	N21	C20	0.0	359.5
C16	C17	N18	C19	357.4	0.0
N18	C17	C16	H17	180.0	180.0
C13	C16	N21	C17	178.4	180.2
N21	C16	C17	N18	2.6	0.2
N21	C16	C17	H17	182.6	180.2
C19	C20	N21	C16	357.5	0.5
C16	N21	C20	C22	179.7	180.2
N18	C17	C16	N21	2.6	0.2
C16	C17	N18	H17	180.0	180.0
C17	N18	C19	C20	0.2	0.0
C17	N18	C19	N31	181.1	180.0
C19	N18	C17	H17	177.4	180.0
C20	C19	N18	N31	179.1	180.0
N18	C19	C20	N21	2.4	359.8
N18	C19	C20	C22	180.2	180.0
N18	C19	N31	H311	0.0	334.7
N18	C19	N31	H312	120.0	154.6
C16	N21	C20	C19	357.5	0.5
N18	C19	C20	N31	181.0	180.0
C20	C19	N31	H311	180.9	154.7
C20	C19	N31	H312	300.9	334.6
N21	C20	C19	C22	182.3	179.8
C19	C20	C22	O23	359.0	5.2
C19	C20	C22	N24	180.5	185.2
N18	C19	N31	C20	179.1	180.0
N31	C19	C20	N21	181.5	179.8
N31	C19	C20	C22	359.2	360.0
H311	N31	C19	H312	240.0	180.0
N21	C20	C19	N31	181.5	179.8
C19	C20	N21	C22	177.9	180.2
N21	C20	C22	O23	176.9	185.5
N21	C20	C22	N24	358.4	5.5
C22	C20	C19	N31	359.2	360.0
C19	C20	C22	N21	182.1	179.8
O23	C22	C20	N24	178.6	180.0
C20	C22	N24	C25	183.0	185.3
C20	C22	N24	H24	3.0	5.3
C20	C22	O23	N24	181.6	180.0
O23	C22	N24	C25	4.5	5.3
O23	C22	N24	H24	184.5	185.3
C20	C22	N24	O23	178.5	180.0
C22	N24	C25	C26	183.4	32.2
C22	N24	C25	C30	4.9	212.0
C25	N24	C22	H24	180.0	180.0
C22	N24	C25	H24	180.0	180.0
C26	C25	N24	C30	178.6	180.2
N24	C25	C26	C27	181.0	180.0
N24	C25	C26	H26	1.0	0.1
N24	C25	C30	N29	178.7	179.6
N24	C25	C30	H30	358.7	360.0
N24	C25	C26	C30	181.3	179.8
C26	C25	N24	H24	3.5	212.3
C26	C25	C30	N29	0.2	359.4
C26	C25	C30	H30	180.2	179.8
C25	C26	C27	C28	0.5	0.1
C27	C26	C25	H26	180.0	180.0
C25	C26	C27	H27	180.5	180.0
N24	C25	C30	C26	178.6	180.2
C30	C25	N24	H24	184.9	32.0
C30	C25	C26	C27	359.6	0.2
C30	C25	C26	H26	179.6	180.3
C28	N29	C30	C25	359.8	0.6
N29	C30	C25	H30	180.0	179.7
C27	C26	C25	C30	359.6	0.2
C25	C26	C27	H26	180.0	180.0
C26	C27	C28	N29	359.5	360.0
C28	C27	C26	H27	180.0	180.1
C26	C27	C28	H28	179.5	180.0
C28	C27	C26	H26	180.5	180.0
C26	C27	C28	H27	180.0	179.9
C27	C28	N29	C30	0.3	359.7
N29	C28	C27	H28	180.0	180.0
C25	C30	N29	C28	359.8	0.6
N29	C28	C27	H27	179.5	180.1
C27	C28	N29	H28	180.0	180.0
C28	N29	C30	H30	179.9	180.3
C25	C30	N29	H30	180.0	180.3
C30	N29	C28	H28	180.3	179.7
H11C	C1	N2	C3	180.0	60.0
H11C	C1	N2	C4	48.8	183.9
N2	C1	H11C	H12C	120.0	120.0
N2	C1	H11C	H13C	240.0	240.0
H12C	C1	H11C	H13C	120.0	120.0
H12C	C1	N2	C3	300.0	180.0
H12C	C1	N2	C4	168.8	304.0
N2	C1	H12C	H11C	239.9	240.0
N2	C1	H12C	H13C	119.9	120.0
H11C	C1	H12C	H13C	240.0	240.0
H13C	C1	N2	C3	60.0	300.0
H13C	C1	N2	C4	288.8	64.0
N2	C1	H13C	H11C	120.1	120.0
N2	C1	H13C	H12C	240.0	240.0
H11C	C1	H13C	H12C	120.0	120.0
H31C	C3	N2	C4	310.1	300.0
N2	C3	H31C	H32C	120.0	120.0
N2	C3	H31C	H33C	240.0	240.1
H32C	C3	H31C	H33C	120.0	120.0
H32C	C3	N2	C4	70.1	60.0
N2	C3	H32C	H31C	240.0	240.0
N2	C3	H32C	H33C	119.9	120.0
H31C	C3	H32C	H33C	240.0	240.0
H33C	C3	N2	C4	190.1	180.1
N2	C3	H33C	H31C	120.0	119.9
N2	C3	H33C	H32C	240.1	240.0
H31C	C3	H33C	H32C	120.0	120.0
N2	C4	H41C	C5	240.7	240.0
N2	C4	H41C	H42C	120.3	120.0
H41C	C4	C5	N6	300.6	60.0
C5	C4	H41C	H42C	239.7	240.0
H41C	C4	C5	H51C	61.0	180.0
H41C	C4	C5	H52C	180.2	300.0
N2	C4	H42C	C5	119.3	120.0
N2	C4	H42C	H41C	239.7	240.0
H42C	C4	C5	N6	180.4	300.0
C5	C4	H42C	H41C	120.3	120.0
H42C	C4	C5	H51C	300.8	60.0
H42C	C4	C5	H52C	60.0	180.0
C4	C5	H51C	N6	237.6	240.0
H51C	C5	C4	H41C	61.0	180.0
H51C	C5	C4	H42C	300.8	60.0
C4	C5	H51C	H52C	118.8	120.0
H51C	C5	N6	S7	104.2	44.9
N6	C5	H51C	H52C	241.2	240.0
H51C	C5	N6	H6	225.0	225.0
C4	C5	H52C	N6	122.4	120.0
H52C	C5	C4	H41C	180.2	300.0
H52C	C5	C4	H42C	60.0	180.0
C4	C5	H52C	H51C	241.2	240.0
H52C	C5	N6	S7	345.0	284.9
N6	C5	H52C	H51C	118.8	120.0
H52C	C5	N6	H6	105.8	104.9
C5	N6	H6	S7	235.4	180.0
H6	N6	C5	H51C	225.0	225.0
H6	N6	C5	H52C	105.8	104.9
H6	N6	S7	O8	270.4	358.5
H6	N6	S7	O9	46.1	131.5
H6	N6	S7	C10	156.2	245.0
H11	C11	C10	C15	179.9	180.3
C10	C11	H11	C12	180.0	180.1
H11	C11	C12	C13	179.5	180.0
H11	C11	C12	H12	359.6	360.0
C10	C15	H15	C14	180.0	179.8
H15	C15	C14	H14	0.1	0.1
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	359.6	360.0
H12	C12	C13	C14	180.8	180.0
H12	C12	C13	C16	0.8	0.0
H14	C14	C13	C16	359.3	360.0
C13	C14	H14	C15	180.0	179.8
H14	C14	C15	H15	0.1	0.1
H17	C17	C16	N21	182.6	180.2
C16	C17	H17	N18	180.0	180.0
H17	C17	N18	C19	177.4	180.0
C19	N31	H311	H312	120.0	180.0
C19	N31	H312	H311	240.0	180.0
C22	N24	H24	C25	180.0	180.0
H24	N24	C25	C26	3.5	212.3
H24	N24	C25	C30	184.9	32.0
H26	C26	C25	C30	179.6	180.3
C25	C26	H26	C27	180.0	180.0
H26	C26	C27	C28	180.5	180.0
H26	C26	C27	H27	0.5	359.9
C25	C30	H30	N29	180.0	179.7
C26	C27	H27	C28	180.0	180.1
H27	C27	C26	H26	0.5	359.9
H27	C27	C28	N29	179.5	180.1
H27	C27	C28	H28	359.5	0.1
C27	C28	H28	N29	180.0	180.0
H28	C28	C27	H27	359.5	0.1
H28	C28	N29	C30	180.3	179.7