Atom Nomenclature for 7YG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7YG

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
C3 C3
C4 C4
C5 C5
N6 N6
S7 S7
O8 O8
O9 O9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
N18 N18
C19 C19
C20 C20
N21 N21
C22 C22
O23 O23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
N29 N29
C30 C30
N31 N31
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H33C H33C
H41C H41C
H42C H42C
H51C H51C
H52C H52C
H6 H6
H11 H11
H15 H15
H12 H12
H14 H14
H17 H17
H311 H311
H312 H312
H24 H24
H26 H26
H30 H30
H27 H27
H28 H28