Atom Nomenclature for 7Y6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7Y6

Atom Name (V3) Atom Name (V2)
CL CL
C12 C12
C11 C11
C10 C10
C13 C13
C14 C14
O2 O2
C15 C15
C19 C19
C18 C18
N2 N2
C17 C17
C16 C16
C9 C9
C8 C8
O1 O1
N N
N1 N1
C7 C7
C6 C6
C5 C5
C4 C4
C3 C3
C2 C2
C20 C20
C1 C1
O O
C C
H11 H11
H13 H13
H10 H10
H15 H15
H191 H191
H192 H192
H161 H161
H162 H162
H181 H181
H182 H182
H2 H2
H171 H171
H172 H172
H1 H1
H H
H61C H61C
H62C H62C
H4 H4
H20 H20
H3 H3
HA HA
HC1 HC1
HC2 HC2
HC3 HC3