PDB Chemical Component 7XO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7XO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAD |
CAF |
1.379 |
1.383 |
| CAD |
CAE |
1.381 |
1.382 |
| CAF |
CAH |
1.382 |
1.380 |
| CAE |
CAG |
1.385 |
1.381 |
| CAH |
CAW |
1.378 |
1.390 |
| CAG |
CAW |
1.380 |
1.389 |
| CAW |
NAV |
1.320 |
1.398 |
| NAV |
C8 |
1.316 |
1.381 |
| C8 |
N7 |
1.312 |
1.309 |
| C8 |
N9 |
1.309 |
1.368 |
| N7 |
C5 |
1.324 |
1.358 |
| N9 |
CBD |
1.445 |
1.465 |
| N9 |
C4 |
1.312 |
1.376 |
| C5 |
C6 |
1.371 |
1.395 |
| C5 |
C4 |
1.373 |
1.409 |
| CBD |
CAA |
1.519 |
1.530 |
| CBD |
CAB |
1.517 |
1.530 |
| C6 |
N1 |
1.301 |
1.323 |
| C4 |
N3 |
1.331 |
1.325 |
| N1 |
C2 |
1.324 |
1.326 |
| N3 |
C2 |
1.330 |
1.324 |
| C2 |
N2 |
1.304 |
1.388 |
| N2 |
CAX |
1.309 |
1.401 |
| CAI |
CAX |
1.378 |
1.389 |
| CAI |
CAK |
1.386 |
1.382 |
| CAX |
CAJ |
1.377 |
1.388 |
| CAK |
CAY |
1.383 |
1.388 |
| CAJ |
CAL |
1.376 |
1.381 |
| CAY |
CAL |
1.376 |
1.389 |
| CAY |
NBF |
1.386 |
1.399 |
| CAQ |
NBF |
1.470 |
1.470 |
| CAQ |
CAO |
1.523 |
1.531 |
| NBF |
CAP |
1.464 |
1.470 |
| CAO |
NBE |
1.462 |
1.470 |
| CAP |
CAN |
1.514 |
1.531 |
| NBE |
CAN |
1.454 |
1.470 |
| NBE |
CAC |
1.460 |
1.469 |
| C6 |
H1 |
1.080 |
1.080 |
| N2 |
H2 |
1.000 |
0.970 |
| CAP |
H3 |
1.100 |
1.090 |
| CAP |
H4 |
1.100 |
1.090 |
| CAN |
H5 |
1.100 |
1.090 |
| CAN |
H6 |
1.101 |
1.090 |
| CAC |
H8 |
1.100 |
1.090 |
| CAC |
H9 |
1.100 |
1.090 |
| CAC |
H10 |
1.100 |
1.090 |
| CAO |
H11 |
1.100 |
1.089 |
| CAO |
H12 |
1.100 |
1.090 |
| CAQ |
H13 |
1.100 |
1.090 |
| CAQ |
H14 |
1.100 |
1.090 |
| CAL |
H15 |
1.080 |
1.080 |
| CAJ |
H16 |
1.080 |
1.079 |
| CAK |
H17 |
1.080 |
1.080 |
| CAI |
H18 |
1.080 |
1.080 |
| CBD |
H19 |
1.100 |
1.090 |
| CAB |
H20 |
1.100 |
1.090 |
| CAB |
H21 |
1.100 |
1.090 |
| CAB |
H22 |
1.100 |
1.091 |
| CAA |
H23 |
1.100 |
1.090 |
| CAA |
H24 |
1.100 |
1.090 |
| CAA |
H25 |
1.100 |
1.090 |
| NAV |
H26 |
1.000 |
0.970 |
| CAG |
H27 |
1.080 |
1.080 |
| CAE |
H28 |
1.080 |
1.081 |
| CAD |
H29 |
1.079 |
1.080 |
| CAF |
H30 |
1.080 |
1.080 |
| CAH |
H31 |
1.081 |
1.080 |
Bond Angles for 7XO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAD |
CAF |
CAH |
120.3 |
120.1 |
| CAF |
CAD |
H29 |
120.2 |
119.9 |
| CAD |
CAF |
H30 |
119.9 |
119.9 |
| CAD |
CAE |
H28 |
119.9 |
119.9 |
| CAH |
CAF |
H30 |
119.9 |
120.0 |
| CAF |
CAH |
H31 |
119.9 |
120.1 |
| CAE |
CAG |
H27 |
120.0 |
120.0 |
| CAW |
NAV |
H26 |
119.9 |
120.0 |
| N7 |
C8 |
N9 |
109.7 |
109.9 |
| C8 |
N9 |
CBD |
124.9 |
126.3 |
| N9 |
CBD |
CAA |
108.9 |
109.5 |
| N9 |
CBD |
CAB |
107.7 |
109.5 |
| N9 |
CBD |
H19 |
110.1 |
109.5 |
| C5 |
C6 |
N1 |
119.1 |
118.7 |
| C5 |
C6 |
H1 |
120.5 |
120.6 |
| C5 |
C4 |
N3 |
119.9 |
119.1 |
| CAB |
CBD |
CAA |
112.0 |
109.4 |
| CAA |
CBD |
H19 |
109.1 |
109.4 |
| CBD |
CAA |
H23 |
109.5 |
109.5 |
| CBD |
CAA |
H24 |
109.5 |
109.5 |
| CBD |
CAA |
H25 |
109.5 |
109.5 |
| CAB |
CBD |
H19 |
109.1 |
109.5 |
| CBD |
CAB |
H20 |
109.5 |
109.5 |
| CBD |
CAB |
H21 |
109.4 |
109.5 |
| CBD |
CAB |
H22 |
109.5 |
109.4 |
| C6 |
N1 |
C2 |
121.1 |
121.3 |
| N1 |
C6 |
H1 |
120.4 |
120.7 |
| C4 |
N3 |
C2 |
118.5 |
120.4 |
| N1 |
C2 |
N3 |
122.2 |
122.2 |
| N1 |
C2 |
N2 |
116.3 |
118.9 |
| C2 |
N2 |
H2 |
118.2 |
120.0 |
| N2 |
CAX |
CAI |
121.8 |
119.9 |
| N2 |
CAX |
CAJ |
117.5 |
120.0 |
| CAX |
N2 |
H2 |
118.2 |
120.0 |
| CAX |
CAI |
H18 |
120.5 |
120.1 |
| CAI |
CAK |
H17 |
119.9 |
120.0 |
| CAX |
CAJ |
H16 |
119.8 |
120.0 |
| CAJ |
CAL |
H15 |
120.3 |
119.9 |
| CAY |
CAL |
H15 |
120.2 |
120.0 |
| NBF |
CAQ |
H13 |
109.6 |
109.5 |
| NBF |
CAQ |
H14 |
109.6 |
109.5 |
| CAQ |
CAO |
H11 |
109.5 |
109.5 |
| CAQ |
CAO |
H12 |
109.5 |
109.5 |
| NBF |
CAP |
H3 |
109.7 |
109.4 |
| NBF |
CAP |
H4 |
109.7 |
109.5 |
| CAN |
CAP |
H3 |
109.7 |
109.5 |
| CAN |
CAP |
H4 |
109.7 |
109.5 |
| CAP |
CAN |
H5 |
110.1 |
109.5 |
| CAP |
CAN |
H6 |
110.1 |
109.4 |
| NBE |
CAN |
H5 |
110.1 |
109.5 |
| NBE |
CAN |
H6 |
110.1 |
109.5 |
| NBE |
CAC |
H8 |
109.5 |
109.5 |
| NBE |
CAC |
H9 |
109.5 |
109.5 |
| NBE |
CAC |
H10 |
109.4 |
109.5 |
| H3 |
CAP |
H4 |
109.5 |
109.5 |
| H5 |
CAN |
H6 |
109.5 |
109.5 |
| H8 |
CAC |
H9 |
109.4 |
109.5 |
| H8 |
CAC |
H10 |
109.5 |
109.4 |
| H9 |
CAC |
H10 |
109.5 |
109.4 |
| H11 |
CAO |
H12 |
109.5 |
109.5 |
| H13 |
CAQ |
H14 |
109.5 |
109.5 |
| H20 |
CAB |
H21 |
109.5 |
109.5 |
| H20 |
CAB |
H22 |
109.4 |
109.5 |
| H21 |
CAB |
H22 |
109.5 |
109.5 |
| H23 |
CAA |
H24 |
109.5 |
109.5 |
| H23 |
CAA |
H25 |
109.5 |
109.4 |
| H24 |
CAA |
H25 |
109.4 |
109.5 |
Torsion Angles for 7XO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAF |
CAD |
CAE |
H28 |
180.2 |
180.0 |
| CAH |
CAF |
CAD |
H30 |
180.0 |
179.6 |
| CAD |
CAF |
CAH |
H31 |
180.3 |
180.1 |
| CAD |
CAE |
CAG |
H27 |
180.2 |
180.0 |
| CAH |
CAF |
CAD |
H29 |
179.6 |
180.0 |
| CAD |
CAF |
CAH |
H30 |
180.0 |
180.4 |
| CAH |
CAW |
NAV |
H26 |
31.3 |
150.3 |
| CAG |
CAW |
NAV |
H26 |
211.2 |
330.6 |
| N7 |
C8 |
N9 |
CBD |
180.4 |
180.0 |
| C8 |
N9 |
CBD |
CAA |
265.1 |
60.0 |
| C8 |
N9 |
CBD |
CAB |
143.4 |
300.0 |
| C8 |
N9 |
CBD |
H19 |
24.6 |
180.0 |
| N7 |
C5 |
C6 |
H1 |
359.8 |
0.1 |
| CAB |
CBD |
N9 |
CAA |
238.3 |
240.0 |
| CAA |
CBD |
N9 |
H19 |
240.5 |
240.0 |
| N9 |
CBD |
CAA |
H23 |
180.0 |
60.0 |
| N9 |
CBD |
CAA |
H24 |
300.0 |
180.0 |
| N9 |
CBD |
CAA |
H25 |
60.0 |
300.0 |
| CAB |
CBD |
N9 |
H19 |
118.8 |
120.1 |
| N9 |
CBD |
CAB |
H20 |
180.0 |
59.9 |
| N9 |
CBD |
CAB |
H21 |
300.0 |
180.0 |
| N9 |
CBD |
CAB |
H22 |
60.0 |
300.0 |
| C6 |
C5 |
C4 |
N3 |
0.1 |
0.1 |
| C5 |
C6 |
N1 |
C2 |
359.7 |
0.0 |
| N1 |
C6 |
C5 |
H1 |
180.0 |
179.9 |
| C5 |
C4 |
N3 |
C2 |
359.8 |
359.9 |
| N9 |
CBD |
CAA |
CAB |
241.0 |
240.0 |
| N9 |
CBD |
CAA |
H19 |
120.1 |
120.0 |
| CAB |
CBD |
CAA |
H19 |
239.2 |
240.0 |
| CAA |
CBD |
CAB |
H20 |
60.3 |
300.0 |
| CAA |
CBD |
CAB |
H21 |
180.2 |
60.0 |
| CAA |
CBD |
CAB |
H22 |
300.3 |
180.0 |
| H23 |
CAA |
CBD |
H24 |
240.0 |
240.0 |
| H23 |
CAA |
CBD |
H25 |
120.0 |
120.0 |
| H24 |
CAA |
CBD |
H25 |
240.1 |
240.0 |
| N9 |
CBD |
CAB |
CAA |
119.7 |
120.0 |
| N9 |
CBD |
CAB |
H19 |
240.6 |
240.0 |
| CAA |
CBD |
CAB |
H19 |
120.8 |
120.0 |
| CAB |
CBD |
CAA |
H23 |
299.0 |
180.0 |
| CAB |
CBD |
CAA |
H24 |
59.1 |
300.0 |
| CAB |
CBD |
CAA |
H25 |
179.0 |
60.0 |
| H20 |
CAB |
CBD |
H21 |
240.0 |
240.0 |
| H20 |
CAB |
CBD |
H22 |
120.0 |
120.0 |
| H21 |
CAB |
CBD |
H22 |
240.0 |
240.0 |
| C5 |
C6 |
N1 |
H1 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
N3 |
0.1 |
360.0 |
| C6 |
N1 |
C2 |
N2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.1 |
0.1 |
| C2 |
N1 |
C6 |
H1 |
179.8 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
0.1 |
0.1 |
| N1 |
C2 |
N2 |
H2 |
7.5 |
174.4 |
| N1 |
C2 |
N3 |
N2 |
179.9 |
180.0 |
| N3 |
C2 |
N2 |
H2 |
187.4 |
354.4 |
| C4 |
N3 |
C2 |
N2 |
180.2 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
180.1 |
180.0 |
| CAX |
N2 |
C2 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N2 |
CAX |
187.5 |
354.4 |
| C2 |
N2 |
CAX |
H2 |
180.0 |
180.0 |
| N2 |
CAX |
CAI |
H18 |
0.3 |
359.2 |
| N2 |
CAX |
CAJ |
H16 |
359.7 |
0.3 |
| N2 |
CAX |
CAI |
CAJ |
180.5 |
179.2 |
| CAI |
CAX |
N2 |
H2 |
169.3 |
324.8 |
| CAX |
CAI |
CAK |
H17 |
179.9 |
179.5 |
| CAI |
CAX |
CAJ |
H16 |
180.2 |
179.5 |
| N2 |
CAX |
CAI |
CAK |
180.3 |
180.0 |
| N2 |
CAX |
CAJ |
CAI |
179.5 |
180.8 |
| CAJ |
CAX |
N2 |
H2 |
349.8 |
144.0 |
| CAX |
CAJ |
CAL |
H15 |
180.0 |
180.1 |
| CAK |
CAY |
CAL |
H15 |
179.7 |
180.2 |
| N2 |
CAX |
CAJ |
CAL |
179.7 |
180.2 |
| CAY |
CAL |
CAJ |
H15 |
180.0 |
180.0 |
| CAJ |
CAL |
CAY |
H15 |
180.0 |
180.0 |
| CAY |
NBF |
CAQ |
H13 |
345.5 |
56.8 |
| CAY |
NBF |
CAQ |
H14 |
105.6 |
296.8 |
| CAY |
NBF |
CAP |
H3 |
250.4 |
63.3 |
| CAY |
NBF |
CAP |
H4 |
10.7 |
303.2 |
| NBF |
CAQ |
CAO |
H11 |
70.3 |
298.4 |
| NBF |
CAQ |
CAO |
H12 |
190.3 |
178.3 |
| CAQ |
NBF |
CAP |
H3 |
73.1 |
299.4 |
| CAQ |
NBF |
CAP |
H4 |
193.4 |
179.3 |
| H13 |
CAQ |
NBF |
H14 |
239.9 |
120.0 |
| H11 |
CAO |
CAQ |
H12 |
240.0 |
120.1 |
| CAN |
CAP |
NBF |
H3 |
240.1 |
119.9 |
| CAN |
CAP |
NBF |
H4 |
119.8 |
240.0 |
| NBF |
CAP |
CAN |
H5 |
176.8 |
61.6 |
| NBF |
CAP |
CAN |
H6 |
297.6 |
181.6 |
| H3 |
CAP |
NBF |
H4 |
239.7 |
120.1 |
| CAO |
NBE |
CAN |
H5 |
169.8 |
299.4 |
| CAO |
NBE |
CAN |
H6 |
49.1 |
179.2 |
| CAO |
NBE |
CAC |
H8 |
180.0 |
296.2 |
| CAO |
NBE |
CAC |
H9 |
300.0 |
56.3 |
| CAO |
NBE |
CAC |
H10 |
60.0 |
176.2 |
| NBF |
CAP |
CAN |
H3 |
119.8 |
240.1 |
| NBF |
CAP |
CAN |
H4 |
240.2 |
120.0 |
| NBE |
CAN |
CAP |
H5 |
240.4 |
240.1 |
| NBE |
CAN |
CAP |
H6 |
119.6 |
120.0 |
| H3 |
CAP |
CAN |
H4 |
120.3 |
239.9 |
| H5 |
CAN |
CAP |
H6 |
239.2 |
239.9 |
| NBE |
CAN |
CAP |
H3 |
297.4 |
61.5 |
| NBE |
CAN |
CAP |
H4 |
177.1 |
181.6 |
| CAP |
CAN |
NBE |
H5 |
119.6 |
119.9 |
| CAP |
CAN |
NBE |
H6 |
240.4 |
240.1 |
| H5 |
CAN |
NBE |
H6 |
120.8 |
120.1 |
| CAC |
NBE |
CAN |
H5 |
50.1 |
175.5 |
| CAC |
NBE |
CAN |
H6 |
289.3 |
55.4 |
| H8 |
CAC |
NBE |
H9 |
240.0 |
240.0 |
| H8 |
CAC |
NBE |
H10 |
120.0 |
120.0 |
| H9 |
CAC |
NBE |
H10 |
240.0 |
240.0 |
| C5 |
C6 |
H1 |
N1 |
180.0 |
179.9 |
| H1 |
C6 |
N1 |
C2 |
179.8 |
180.0 |
| H2 |
N2 |
CAX |
CAI |
169.3 |
324.8 |
| H2 |
N2 |
CAX |
CAJ |
349.8 |
144.0 |
| NBF |
CAP |
H3 |
H4 |
120.5 |
239.9 |
| CAN |
CAP |
H3 |
H4 |
239.6 |
120.1 |
| H3 |
CAP |
CAN |
H5 |
57.0 |
181.5 |
| H3 |
CAP |
CAN |
H6 |
177.8 |
301.5 |
| NBF |
CAP |
H4 |
H3 |
239.6 |
120.0 |
| CAN |
CAP |
H4 |
H3 |
120.5 |
239.9 |
| H4 |
CAP |
CAN |
H5 |
296.7 |
301.6 |
| H4 |
CAP |
CAN |
H6 |
57.5 |
61.6 |
| H5 |
CAN |
CAP |
H3 |
57.0 |
181.5 |
| H5 |
CAN |
CAP |
H4 |
296.7 |
301.6 |
| CAP |
CAN |
H5 |
H6 |
121.2 |
120.0 |
| NBE |
CAN |
H5 |
H6 |
238.9 |
239.9 |
| H6 |
CAN |
CAP |
H3 |
177.8 |
301.5 |
| H6 |
CAN |
CAP |
H4 |
57.5 |
61.6 |
| CAP |
CAN |
H6 |
H5 |
238.9 |
240.0 |
| NBE |
CAN |
H6 |
H5 |
121.1 |
120.1 |
| NBE |
CAC |
H8 |
H9 |
120.0 |
120.0 |
| NBE |
CAC |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
CAC |
H8 |
H10 |
120.0 |
119.9 |
| NBE |
CAC |
H9 |
H8 |
239.9 |
239.9 |
| NBE |
CAC |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
CAC |
H9 |
H10 |
240.0 |
240.1 |
| NBE |
CAC |
H10 |
H8 |
120.0 |
120.1 |
| NBE |
CAC |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
CAC |
H10 |
H9 |
120.0 |
120.0 |
| CAQ |
CAO |
H11 |
H12 |
120.1 |
239.9 |
| CAQ |
CAO |
H12 |
H11 |
239.9 |
120.0 |
| NBF |
CAQ |
H13 |
H14 |
120.2 |
239.9 |
| H13 |
CAQ |
CAO |
H11 |
310.3 |
58.4 |
| H13 |
CAQ |
CAO |
H12 |
70.4 |
298.3 |
| NBF |
CAQ |
H14 |
H13 |
239.8 |
120.1 |
| H14 |
CAQ |
CAO |
H11 |
190.3 |
178.4 |
| H14 |
CAQ |
CAO |
H12 |
310.3 |
58.3 |
| H16 |
CAJ |
CAL |
H15 |
0.0 |
360.0 |
| H18 |
CAI |
CAK |
H17 |
359.9 |
0.3 |
| N9 |
CBD |
H19 |
CAA |
240.6 |
240.0 |
| N9 |
CBD |
H19 |
CAB |
118.0 |
120.0 |
| CAB |
CBD |
H19 |
CAA |
122.6 |
120.0 |
| H19 |
CBD |
CAA |
H23 |
59.9 |
300.0 |
| H19 |
CBD |
CAA |
H24 |
179.9 |
60.0 |
| H19 |
CBD |
CAA |
H25 |
299.8 |
180.0 |
| H19 |
CBD |
CAB |
H20 |
299.4 |
180.0 |
| H19 |
CBD |
CAB |
H21 |
59.4 |
300.0 |
| H19 |
CBD |
CAB |
H22 |
179.5 |
60.0 |
| H20 |
CAB |
CBD |
CAA |
60.3 |
300.0 |
| H20 |
CAB |
CBD |
H19 |
299.4 |
180.0 |
| CBD |
CAB |
H20 |
H21 |
120.0 |
120.0 |
| CBD |
CAB |
H20 |
H22 |
240.0 |
240.1 |
| H21 |
CAB |
H20 |
H22 |
120.0 |
120.0 |
| H21 |
CAB |
CBD |
CAA |
180.2 |
60.0 |
| H21 |
CAB |
CBD |
H19 |
59.4 |
300.0 |
| CBD |
CAB |
H21 |
H20 |
240.0 |
240.0 |
| CBD |
CAB |
H21 |
H22 |
120.0 |
120.0 |
| H20 |
CAB |
H21 |
H22 |
240.0 |
240.0 |
| H22 |
CAB |
CBD |
CAA |
300.3 |
180.0 |
| H22 |
CAB |
CBD |
H19 |
179.5 |
60.0 |
| CBD |
CAB |
H22 |
H20 |
120.0 |
120.0 |
| CBD |
CAB |
H22 |
H21 |
240.0 |
240.0 |
| H20 |
CAB |
H22 |
H21 |
120.0 |
120.0 |
| H23 |
CAA |
CBD |
H19 |
59.9 |
300.0 |
| CBD |
CAA |
H23 |
H24 |
120.0 |
120.0 |
| CBD |
CAA |
H23 |
H25 |
240.0 |
240.0 |
| H24 |
CAA |
H23 |
H25 |
119.9 |
120.0 |
| H24 |
CAA |
CBD |
H19 |
179.9 |
60.0 |
| CBD |
CAA |
H24 |
H23 |
240.0 |
240.0 |
| CBD |
CAA |
H24 |
H25 |
120.0 |
120.0 |
| H23 |
CAA |
H24 |
H25 |
240.0 |
240.0 |
| H25 |
CAA |
CBD |
H19 |
299.8 |
180.0 |
| CBD |
CAA |
H25 |
H23 |
120.0 |
120.0 |
| CBD |
CAA |
H25 |
H24 |
240.0 |
240.0 |
| H23 |
CAA |
H25 |
H24 |
120.0 |
120.0 |
| H28 |
CAE |
CAG |
H27 |
0.2 |
0.1 |
| H29 |
CAD |
CAF |
CAH |
179.6 |
180.0 |
| H29 |
CAD |
CAF |
H30 |
359.5 |
0.3 |
| H29 |
CAD |
CAE |
H28 |
0.2 |
359.7 |
| CAD |
CAF |
H30 |
CAH |
180.0 |
179.6 |
| H30 |
CAF |
CAD |
H29 |
359.5 |
0.3 |
| H30 |
CAF |
CAH |
H31 |
0.4 |
359.7 |
| H31 |
CAH |
CAF |
H30 |
0.4 |
359.7 |