PDB Chemical Component 7X8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7X8
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N2 |
C7 |
1.415 |
1.415 |
N2 |
C6 |
1.414 |
1.414 |
C7 |
N3 |
1.340 |
1.340 |
C7 |
N5 |
1.336 |
1.336 |
N3 |
C8 |
1.342 |
1.342 |
C8 |
C9 |
1.376 |
1.376 |
C9 |
C10 |
1.393 |
1.393 |
C10 |
N4 |
1.400 |
1.400 |
C10 |
N5 |
1.331 |
1.331 |
N4 |
C11 |
1.400 |
1.400 |
C11 |
C12 |
1.383 |
1.383 |
C11 |
C17 |
1.387 |
1.387 |
C12 |
O2 |
1.382 |
1.382 |
C12 |
C14 |
1.368 |
1.368 |
O2 |
C13 |
1.434 |
1.434 |
C13 |
O3 |
1.449 |
1.449 |
O3 |
C14 |
1.373 |
1.373 |
C14 |
C15 |
1.374 |
1.374 |
C15 |
C16 |
1.389 |
1.389 |
C16 |
C17 |
1.384 |
1.384 |
C17 |
CL1 |
1.743 |
1.743 |
N1 |
C1 |
1.378 |
1.378 |
C1 |
O1 |
1.226 |
1.226 |
C1 |
C2 |
1.470 |
1.470 |
C2 |
C3 |
1.378 |
1.378 |
C2 |
C18 |
1.389 |
1.389 |
C3 |
C4 |
1.378 |
1.378 |
C4 |
C5 |
1.376 |
1.376 |
C5 |
C6 |
1.388 |
1.388 |
C6 |
C18 |
1.375 |
1.375 |
N2 |
H2 |
1.000 |
1.000 |
C8 |
H8 |
1.080 |
1.080 |
C9 |
H9 |
1.080 |
1.080 |
N4 |
H4 |
1.000 |
1.000 |
C13 |
H131 |
1.100 |
1.100 |
C13 |
H132 |
1.100 |
1.100 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
N1 |
H1N1 |
1.000 |
1.000 |
N1 |
H1N2 |
1.000 |
1.000 |
C3 |
H3 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
C4 |
HA |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
Bond Angles for 7X8
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
N2 |
C6 |
126.1 |
126.1 |
N2 |
C7 |
N3 |
111.6 |
111.6 |
N2 |
C7 |
N5 |
123.5 |
123.5 |
C7 |
N2 |
H2 |
117.0 |
117.0 |
N2 |
C6 |
C5 |
118.0 |
118.0 |
N2 |
C6 |
C18 |
122.2 |
122.2 |
C6 |
N2 |
H2 |
116.9 |
116.9 |
N3 |
C7 |
N5 |
124.8 |
124.8 |
C7 |
N3 |
C8 |
117.0 |
117.0 |
C7 |
N5 |
C10 |
117.3 |
117.3 |
N3 |
C8 |
C9 |
122.3 |
122.3 |
N3 |
C8 |
H8 |
118.9 |
118.9 |
C8 |
C9 |
C10 |
116.4 |
116.4 |
C9 |
C8 |
H8 |
118.8 |
118.8 |
C8 |
C9 |
H9 |
121.8 |
121.8 |
C9 |
C10 |
N4 |
120.9 |
120.9 |
C9 |
C10 |
N5 |
122.2 |
122.2 |
C10 |
C9 |
H9 |
121.8 |
121.8 |
N4 |
C10 |
N5 |
117.0 |
117.0 |
C10 |
N4 |
C11 |
123.3 |
123.3 |
C10 |
N4 |
H4 |
118.3 |
118.3 |
N4 |
C11 |
C12 |
121.0 |
121.0 |
N4 |
C11 |
C17 |
121.9 |
121.9 |
C11 |
N4 |
H4 |
118.3 |
118.3 |
C12 |
C11 |
C17 |
117.1 |
117.1 |
C11 |
C12 |
O2 |
125.4 |
125.4 |
C11 |
C12 |
C14 |
121.7 |
121.7 |
C11 |
C17 |
C16 |
120.4 |
120.4 |
C11 |
C17 |
CL1 |
117.5 |
117.5 |
O2 |
C12 |
C14 |
112.9 |
112.9 |
C12 |
O2 |
C13 |
98.7 |
98.7 |
C12 |
C14 |
O3 |
111.2 |
111.2 |
C12 |
C14 |
C15 |
122.1 |
122.1 |
O2 |
C13 |
O3 |
112.8 |
112.8 |
O2 |
C13 |
H131 |
108.4 |
108.4 |
O2 |
C13 |
H132 |
107.6 |
107.6 |
C13 |
O3 |
C14 |
99.7 |
99.7 |
O3 |
C13 |
H131 |
108.4 |
108.4 |
O3 |
C13 |
H132 |
107.6 |
107.6 |
O3 |
C14 |
C15 |
126.7 |
126.7 |
C14 |
C15 |
C16 |
116.4 |
116.4 |
C14 |
C15 |
H15 |
121.8 |
121.8 |
C15 |
C16 |
C17 |
122.2 |
122.2 |
C16 |
C15 |
H15 |
121.8 |
121.8 |
C15 |
C16 |
H16 |
118.9 |
118.9 |
C16 |
C17 |
CL1 |
122.1 |
122.1 |
C17 |
C16 |
H16 |
118.9 |
118.9 |
N1 |
C1 |
O1 |
125.1 |
125.1 |
N1 |
C1 |
C2 |
115.5 |
115.5 |
C1 |
N1 |
H1N1 |
112.7 |
112.7 |
C1 |
N1 |
H1N2 |
123.6 |
123.6 |
O1 |
C1 |
C2 |
119.3 |
119.3 |
C1 |
C2 |
C3 |
119.5 |
119.5 |
C1 |
C2 |
C18 |
118.8 |
118.8 |
C3 |
C2 |
C18 |
121.8 |
121.8 |
C2 |
C3 |
C4 |
119.4 |
119.4 |
C2 |
C3 |
H3 |
120.3 |
120.3 |
C2 |
C18 |
C6 |
118.4 |
118.4 |
C2 |
C18 |
H18 |
120.8 |
120.8 |
C3 |
C4 |
C5 |
119.2 |
119.2 |
C4 |
C3 |
H3 |
120.3 |
120.3 |
C3 |
C4 |
HA |
120.4 |
120.4 |
C4 |
C5 |
C6 |
121.3 |
121.3 |
C5 |
C4 |
HA |
120.4 |
120.4 |
C4 |
C5 |
H5 |
119.4 |
119.4 |
C5 |
C6 |
C18 |
119.8 |
119.8 |
C6 |
C5 |
H5 |
119.3 |
119.3 |
C6 |
C18 |
H18 |
120.8 |
120.8 |
H131 |
C13 |
H132 |
112.1 |
112.1 |
H1N1 |
N1 |
H1N2 |
123.6 |
123.7 |
Torsion Angles for 7X8
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
N2 |
C6 |
C5 |
172.1 |
172.1 |
C7 |
N2 |
C6 |
C18 |
353.1 |
353.1 |
C6 |
N2 |
C7 |
H2 |
180.0 |
180.0 |
N3 |
C7 |
N2 |
N5 |
178.5 |
178.5 |
N2 |
C7 |
N3 |
C8 |
181.4 |
181.4 |
N2 |
C7 |
N5 |
C10 |
178.4 |
178.4 |
C6 |
N2 |
C7 |
N3 |
178.8 |
178.8 |
C6 |
N2 |
C7 |
N5 |
0.3 |
0.3 |
C7 |
N2 |
C6 |
H2 |
180.0 |
180.0 |
C2 |
C18 |
C6 |
N2 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
N2 |
180.1 |
180.1 |
C5 |
C6 |
N2 |
C18 |
179.1 |
179.1 |
N2 |
C6 |
C5 |
H5 |
0.1 |
0.1 |
N2 |
C6 |
C18 |
H18 |
0.0 |
0.0 |
N3 |
C7 |
N2 |
C6 |
178.8 |
178.8 |
N2 |
C7 |
N3 |
N5 |
181.5 |
181.5 |
N3 |
C7 |
N2 |
H2 |
358.8 |
358.8 |
N3 |
C7 |
N5 |
C10 |
0.0 |
0.0 |
C7 |
N3 |
C8 |
C9 |
360.0 |
360.0 |
C7 |
N3 |
C8 |
H8 |
180.0 |
180.0 |
N5 |
C7 |
N2 |
C6 |
0.3 |
0.3 |
N2 |
C7 |
N5 |
N3 |
178.3 |
178.3 |
N5 |
C7 |
N2 |
H2 |
180.3 |
180.3 |
N5 |
C7 |
N3 |
C8 |
359.9 |
359.9 |
C9 |
C10 |
N5 |
C7 |
0.2 |
0.2 |
N4 |
C10 |
N5 |
C7 |
180.1 |
180.1 |
C8 |
N3 |
C7 |
N5 |
359.9 |
359.9 |
N3 |
C8 |
C9 |
C10 |
0.2 |
0.2 |
C9 |
C8 |
N3 |
H8 |
180.0 |
180.0 |
N3 |
C8 |
C9 |
H9 |
180.2 |
180.2 |
N3 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
N4 |
179.8 |
179.8 |
C8 |
C9 |
C10 |
N5 |
359.6 |
359.6 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C7 |
N5 |
C10 |
C9 |
0.2 |
0.2 |
C10 |
C9 |
C8 |
H8 |
180.2 |
180.2 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
N4 |
C10 |
C9 |
N5 |
180.1 |
180.1 |
C9 |
C10 |
N4 |
C11 |
3.9 |
3.9 |
C9 |
C10 |
N4 |
H4 |
183.9 |
183.9 |
C7 |
N5 |
C10 |
N4 |
180.1 |
180.1 |
C9 |
C10 |
N4 |
N5 |
179.9 |
179.9 |
N4 |
C10 |
C9 |
H9 |
359.8 |
359.8 |
C10 |
N4 |
C11 |
C12 |
68.9 |
68.9 |
C10 |
N4 |
C11 |
C17 |
248.2 |
248.2 |
C11 |
N4 |
C10 |
H4 |
180.0 |
180.0 |
C9 |
C10 |
N5 |
N4 |
180.1 |
180.1 |
N5 |
C10 |
C9 |
H9 |
179.6 |
179.6 |
N5 |
C10 |
N4 |
C11 |
184.0 |
184.0 |
N5 |
C10 |
N4 |
H4 |
4.0 |
4.0 |
C11 |
N4 |
C10 |
N5 |
184.0 |
184.0 |
C10 |
N4 |
C11 |
H4 |
180.0 |
180.0 |
C12 |
C11 |
N4 |
C17 |
180.7 |
180.7 |
N4 |
C11 |
C12 |
O2 |
358.0 |
358.0 |
N4 |
C11 |
C12 |
C14 |
178.6 |
178.6 |
N4 |
C11 |
C17 |
C16 |
180.6 |
180.6 |
N4 |
C11 |
C17 |
CL1 |
0.4 |
0.4 |
N4 |
C11 |
C12 |
C17 |
179.4 |
179.4 |
C12 |
C11 |
N4 |
H4 |
248.9 |
248.9 |
C12 |
C11 |
C17 |
C16 |
359.9 |
359.9 |
C12 |
C11 |
C17 |
CL1 |
179.8 |
179.8 |
O2 |
C12 |
C11 |
C14 |
179.4 |
179.4 |
C11 |
C12 |
O2 |
C13 |
193.2 |
193.2 |
C11 |
C12 |
C14 |
O3 |
179.4 |
179.4 |
C11 |
C12 |
C14 |
C15 |
0.7 |
0.7 |
N4 |
C11 |
C17 |
C12 |
180.7 |
180.7 |
C17 |
C11 |
N4 |
H4 |
68.2 |
68.2 |
C17 |
C11 |
C12 |
O2 |
178.6 |
178.6 |
C17 |
C11 |
C12 |
C14 |
359.2 |
359.2 |
C15 |
C16 |
C17 |
C11 |
1.1 |
1.1 |
C16 |
C17 |
C11 |
CL1 |
180.2 |
180.2 |
C11 |
C17 |
C16 |
H16 |
181.1 |
181.1 |
O2 |
C12 |
C11 |
C17 |
178.6 |
178.6 |
C11 |
C12 |
O2 |
C14 |
180.6 |
180.6 |
O2 |
C12 |
C14 |
O3 |
359.9 |
359.9 |
O2 |
C12 |
C14 |
C15 |
181.2 |
181.2 |
C12 |
O2 |
C13 |
O3 |
338.8 |
338.8 |
C12 |
O2 |
C13 |
H131 |
98.8 |
98.8 |
C12 |
O2 |
C13 |
H132 |
220.2 |
220.2 |
C14 |
C12 |
C11 |
C17 |
359.2 |
359.2 |
C11 |
C12 |
C14 |
O2 |
179.5 |
179.5 |
C14 |
C12 |
O2 |
C13 |
12.7 |
12.7 |
C13 |
O3 |
C14 |
C12 |
347.6 |
347.6 |
O3 |
C14 |
C12 |
C15 |
178.7 |
178.7 |
C12 |
C14 |
C15 |
C16 |
0.3 |
0.3 |
C12 |
C14 |
C15 |
H15 |
180.4 |
180.4 |
C13 |
O2 |
C12 |
C14 |
12.7 |
12.7 |
O2 |
C13 |
O3 |
C14 |
21.5 |
21.5 |
O3 |
C13 |
O2 |
H131 |
240.0 |
240.0 |
O3 |
C13 |
O2 |
H132 |
118.5 |
118.5 |
H131 |
C13 |
O2 |
H132 |
238.6 |
238.6 |
C12 |
C14 |
O3 |
C13 |
347.6 |
347.6 |
O2 |
C13 |
O3 |
H131 |
120.0 |
120.0 |
O2 |
C13 |
O3 |
H132 |
241.5 |
241.5 |
C13 |
O3 |
C14 |
C15 |
166.2 |
166.2 |
H131 |
C13 |
O3 |
H132 |
121.5 |
121.5 |
C12 |
C14 |
O3 |
C15 |
181.3 |
181.3 |
C14 |
O3 |
C13 |
H131 |
261.5 |
261.5 |
C14 |
O3 |
C13 |
H132 |
140.0 |
140.0 |
O3 |
C14 |
C15 |
C16 |
181.8 |
181.8 |
O3 |
C14 |
C15 |
H15 |
1.9 |
1.9 |
C12 |
C14 |
C15 |
O3 |
178.5 |
178.5 |
C14 |
C15 |
C16 |
C17 |
358.8 |
358.8 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
H16 |
178.8 |
178.8 |
C11 |
C17 |
C16 |
C15 |
1.1 |
1.1 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
CL1 |
181.3 |
181.3 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C11 |
C17 |
C16 |
CL1 |
179.8 |
179.8 |
C17 |
C16 |
C15 |
H15 |
178.8 |
178.8 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C11 |
C17 |
CL1 |
C16 |
180.2 |
180.2 |
CL1 |
C17 |
C16 |
H16 |
1.3 |
1.3 |
O1 |
C1 |
N1 |
C2 |
180.0 |
180.0 |
N1 |
C1 |
C2 |
C3 |
46.9 |
46.9 |
N1 |
C1 |
C2 |
C18 |
226.0 |
226.0 |
H1N1 |
N1 |
C1 |
H1N2 |
180.0 |
180.0 |
N1 |
C1 |
O1 |
C2 |
180.0 |
180.0 |
O1 |
C1 |
N1 |
H1N1 |
0.0 |
0.0 |
O1 |
C1 |
N1 |
H1N2 |
180.0 |
180.0 |
O1 |
C1 |
C2 |
C3 |
227.0 |
227.0 |
O1 |
C1 |
C2 |
C18 |
46.0 |
46.0 |
N1 |
C1 |
C2 |
O1 |
180.0 |
180.0 |
C2 |
C1 |
N1 |
H1N1 |
180.0 |
180.1 |
C2 |
C1 |
N1 |
H1N2 |
0.1 |
0.1 |
C3 |
C2 |
C1 |
C18 |
181.0 |
181.0 |
C1 |
C2 |
C3 |
C4 |
179.3 |
179.3 |
C1 |
C2 |
C3 |
H3 |
359.3 |
359.3 |
C1 |
C2 |
C18 |
C6 |
180.3 |
180.3 |
C1 |
C2 |
C18 |
H18 |
0.3 |
0.3 |
C1 |
C2 |
C3 |
C18 |
179.0 |
179.0 |
C3 |
C2 |
C18 |
C6 |
359.3 |
359.3 |
C3 |
C2 |
C18 |
H18 |
179.3 |
179.3 |
C2 |
C3 |
C4 |
C5 |
359.9 |
359.9 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
HA |
179.9 |
179.9 |
N2 |
C6 |
C18 |
C2 |
180.0 |
180.0 |
C1 |
C2 |
C18 |
C3 |
181.0 |
181.0 |
C18 |
C2 |
C3 |
C4 |
0.3 |
0.3 |
C18 |
C2 |
C3 |
H3 |
180.3 |
180.3 |
C5 |
C6 |
C18 |
C2 |
1.0 |
1.0 |
C6 |
C18 |
C2 |
H18 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
C18 |
0.3 |
0.3 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.4 |
0.4 |
C5 |
C4 |
C3 |
HA |
180.0 |
180.0 |
C3 |
C4 |
C5 |
H5 |
180.4 |
180.4 |
N2 |
C6 |
C5 |
C4 |
180.1 |
180.1 |
C5 |
C4 |
C3 |
H3 |
179.9 |
179.9 |
C3 |
C4 |
C5 |
HA |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C18 |
359.2 |
359.2 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
N2 |
C6 |
C5 |
C18 |
180.9 |
180.9 |
C5 |
C6 |
N2 |
H2 |
352.2 |
352.2 |
C2 |
C18 |
C6 |
C5 |
1.0 |
1.0 |
C6 |
C5 |
C4 |
HA |
180.4 |
180.4 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C5 |
C6 |
C18 |
H18 |
181.0 |
181.0 |
N2 |
C6 |
C18 |
C5 |
179.1 |
179.1 |
C18 |
C6 |
N2 |
H2 |
173.1 |
173.1 |
C2 |
C18 |
C6 |
H18 |
180.0 |
180.0 |
C18 |
C6 |
C5 |
H5 |
179.2 |
179.2 |
C7 |
N2 |
H2 |
C6 |
180.0 |
180.0 |
H2 |
N2 |
C7 |
N3 |
358.8 |
358.8 |
H2 |
N2 |
C7 |
N5 |
180.3 |
180.3 |
H2 |
N2 |
C6 |
C5 |
352.2 |
352.2 |
H2 |
N2 |
C6 |
C18 |
173.1 |
173.1 |
N3 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
H8 |
C8 |
C9 |
C10 |
180.2 |
180.2 |
H8 |
C8 |
C9 |
H9 |
0.2 |
0.2 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C8 |
H8 |
0.2 |
0.2 |
H9 |
C9 |
C10 |
N4 |
359.8 |
359.8 |
H9 |
C9 |
C10 |
N5 |
179.6 |
179.6 |
H4 |
N4 |
C10 |
N5 |
4.0 |
4.0 |
C10 |
N4 |
H4 |
C11 |
180.0 |
180.0 |
H4 |
N4 |
C11 |
C12 |
248.9 |
248.9 |
H4 |
N4 |
C11 |
C17 |
68.2 |
68.2 |
O2 |
C13 |
H131 |
O3 |
237.3 |
237.3 |
O2 |
C13 |
H131 |
H132 |
118.6 |
118.6 |
H131 |
C13 |
O3 |
C14 |
261.5 |
261.5 |
O3 |
C13 |
H131 |
H132 |
241.4 |
241.4 |
O2 |
C13 |
H132 |
O3 |
121.8 |
121.8 |
O2 |
C13 |
H132 |
H131 |
240.9 |
240.9 |
H132 |
C13 |
O3 |
C14 |
140.0 |
140.0 |
O3 |
C13 |
H132 |
H131 |
119.1 |
119.1 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
H15 |
C15 |
C16 |
C17 |
178.8 |
178.8 |
H15 |
C15 |
C16 |
H16 |
358.8 |
358.8 |
C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
358.8 |
358.8 |
H16 |
C16 |
C17 |
CL1 |
1.3 |
1.3 |
H1N1 |
N1 |
C1 |
O1 |
0.0 |
0.0 |
H1N1 |
N1 |
C1 |
C2 |
180.0 |
180.1 |
C1 |
N1 |
H1N1 |
H1N2 |
180.0 |
180.0 |
H1N2 |
N1 |
C1 |
O1 |
180.0 |
180.0 |
H1N2 |
N1 |
C1 |
C2 |
0.1 |
0.1 |
C1 |
N1 |
H1N2 |
H1N1 |
180.0 |
180.0 |
H3 |
C3 |
C2 |
C18 |
180.3 |
180.3 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
179.9 |
179.9 |
H3 |
C3 |
C4 |
HA |
359.9 |
359.9 |
C2 |
C18 |
H18 |
C6 |
180.0 |
180.0 |
C3 |
C4 |
HA |
C5 |
180.0 |
180.0 |
HA |
C4 |
C3 |
H3 |
359.9 |
359.9 |
HA |
C4 |
C5 |
C6 |
180.4 |
180.4 |
HA |
C4 |
C5 |
H5 |
0.4 |
0.4 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
HA |
0.4 |
0.4 |
H5 |
C5 |
C6 |
C18 |
179.2 |
179.2 |