Atom Nomenclature for 7VA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7VA

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C17 C3
C20 C4
C22 C5
C24 C6
C26 C7
C28 C8
N01 N1
C02 C9
C03 C10
S04 S1
C05 C11
O06 O1
O07 O2
C08 C12
C09 C13
C11 C14
C12 C15
C14 C16
O15 O3
C16 C17
N18 N2
C19 C18
N21 N3
C23 C19
C25 C20
O27 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19