Atom Nomenclature for 7TX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7TX

Atom Name (V3) Atom Name (V2)
OAE O1
CBA C1
NAU N1
CAZ C2
OAD O2
CBB C3
CAK C4
CAG C5
CAH C6
CAL C7
CBC C8
NBG N2
CAR C9
CAW C10
CAM C11
CAI C12
CAJ C13
CAX C14
FAF F1
CAY C15
CAV C16
OAC O3
NAT N3
CBE C17
CAS C18
CAO C19
CAQ C20
NBF N4
CAP C21
CAN C22
CBD C23
CAB C24
CAA C25
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30