Atom Nomenclature for 7RM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7RM

Atom Name (V3) Atom Name (V2)
C01 C1
C02 C2
C09 C3
C10 C4
C11 C5
C12 C6
C13 C7
C16 C8
C18 C9
C19 C10
C21 C11
C23 C12
N04 N1
N15 N2
N17 N3
N20 N4
N22 N5
N24 N6
O03 O1
O06 O2
O07 O3
O08 O4
O14 O5
O25 O6
O26 O7
S05 S1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16