PDB Chemical Component 7RA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7RA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.406 1.408
C4 N3 1.365 1.334
C4 N9 1.331 1.347
C5 C6 1.432 1.386
C5 N7 1.374 1.381
C6 N1 1.375 1.323
C6 H6 1.104 1.080
N1 C2 1.378 1.327
C2 N3 1.366 1.321
C2 N10 1.392 1.386
N9 C8 1.332 1.304
C8 N7 1.352 1.352
C8 H8 1.103 1.080
N7 C1' 1.543 1.464
N10 H101 1.019 0.971
N10 H102 1.020 0.969
P O1P 1.503 1.481
P O2P 1.480 1.609
P O3P 1.486 1.609
P O5' 1.611 1.609
O2P HOP2 0.950 0.967
O3P HOP3 0.950 0.967
O5' C5' 1.450 1.428
C5' C4' 1.509 1.531
C5' H5'1 1.116 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.477 1.435
C4' C3' 1.530 1.549
C4' H4' 1.115 1.090
O4' C1' 1.408 1.432
C3' O3' 1.436 1.428
C3' C2' 1.509 1.554
C3' H3' 1.115 1.090
O3' HO'3 0.951 0.967
C2' O2' 1.432 1.428
C2' C1' 1.524 1.544
C2' H2' 1.116 1.089
O2' HO'2 0.950 0.968
C1' H1' 1.115 1.090

Bond Angles for 7RA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 N3 122.7 118.7
C5 C4 N9 106.7 106.8
C4 C5 C6 118.4 118.8
C4 C5 N7 108.9 106.1
N3 C4 N9 130.6 134.5
C4 N3 C2 118.0 120.4
C4 N9 C8 107.8 109.8
C6 C5 N7 132.7 135.2
C5 C6 N1 117.3 118.8
C5 C6 H6 123.2 120.6
C5 N7 C8 103.8 107.1
C5 N7 C1' 129.6 126.5
N1 C6 H6 119.5 120.6
C6 N1 C2 122.1 121.2
N1 C2 N3 121.6 122.2
N1 C2 N10 119.5 118.9
N3 C2 N10 118.8 118.9
C2 N10 H101 119.5 120.0
C2 N10 H102 108.6 120.0
N9 C8 N7 112.7 110.3
N9 C8 H8 123.0 124.9
N7 C8 H8 124.2 124.9
C8 N7 C1' 126.6 126.4
N7 C1' O4' 110.8 109.9
N7 C1' C2' 115.8 109.8
N7 C1' H1' 102.6 109.8
H101 N10 H102 108.6 120.0
O1P P O2P 112.2 109.5
O1P P O3P 109.0 109.4
O1P P O5' 107.4 109.4
O2P P O3P 109.0 109.5
O2P P O5' 108.2 109.5
P O2P HOP2 112.2 106.9
O3P P O5' 111.1 109.5
P O3P HOP3 109.0 106.7
P O5' C5' 121.0 106.8
O5' C5' C4' 109.1 109.5
O5' C5' H5'1 112.3 109.5
O5' C5' H5'2 112.3 109.5
C4' C5' H5'1 112.4 109.4
C4' C5' H5'2 112.4 109.4
C5' C4' O4' 112.9 110.3
C5' C4' C3' 116.6 110.4
C5' C4' H4' 100.0 110.2
H5'1 C5' H5'2 98.0 109.4
O4' C4' C3' 103.1 105.2
O4' C4' H4' 114.3 110.3
C4' O4' C1' 111.3 110.0
C3' C4' H4' 110.5 110.3
C4' C3' O3' 113.1 111.2
C4' C3' C2' 100.1 101.0
C4' C3' H3' 114.2 111.1
O4' C1' C2' 104.4 107.7
O4' C1' H1' 114.4 109.8
O3' C3' C2' 111.9 111.2
O3' C3' H3' 102.8 111.0
C3' O3' HO'3 113.1 106.8
C2' C3' H3' 115.3 111.0
C3' C2' O2' 111.8 110.8
C3' C2' C1' 104.1 102.2
C3' C2' H2' 113.4 110.8
O2' C2' C1' 114.4 111.0
O2' C2' H2' 102.8 110.7
C2' O2' HO'2 111.8 106.8
C1' C2' H2' 110.7 111.0
C2' C1' H1' 109.2 109.8

Torsion Angles for 7RA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C4 C5 N9 180.3 179.8
C5 C4 N3 C2 0.2 0.5
C5 C4 N9 C8 359.5 0.0
C6 C5 C4 N7 179.8 180.0
C4 C5 C6 N1 359.7 360.0
C4 C5 C6 H6 179.7 180.0
C4 C5 N7 C8 0.5 360.0
C4 C5 N7 C1' 178.4 180.0
C5 C4 N3 N9 179.6 180.3
N3 C4 C5 C6 0.1 359.8
N3 C4 C5 N7 180.3 179.8
N3 C4 N9 C8 179.1 180.3
N1 C2 N3 C4 359.7 359.4
C4 N3 C2 N10 179.7 179.8
C5 C4 N9 N3 180.3 179.7
N9 C4 C5 C6 179.8 180.0
N9 C4 C5 N7 0.0 360.0
N9 C4 N3 C2 180.6 180.2
C4 N9 C8 N7 0.9 360.0
C4 N9 C8 H8 180.8 180.0
C6 C5 C4 N3 0.1 359.8
C6 C5 C4 N9 179.8 180.0
C4 C5 C6 N7 180.3 180.0
C6 C5 N7 C8 180.7 180.0
C6 C5 N7 C1' 358.7 0.0
N1 C6 C5 H6 180.0 180.0
C5 C6 N1 C2 0.2 360.0
N7 C5 C4 N3 180.3 179.8
N7 C5 C4 N9 0.0 360.0
C4 C5 N7 C6 179.7 180.0
N7 C5 C6 N1 179.4 180.0
N7 C5 C6 H6 359.4 0.0
N9 C8 N7 C5 359.2 0.0
C5 N7 C8 H8 179.2 180.0
C8 N7 C5 C1' 182.1 180.0
C5 N7 C1' O4' 6.8 151.6
C5 N7 C1' C2' 125.5 269.8
C5 N7 C1' H1' 244.3 30.7
N1 C6 C5 N7 179.4 180.0
C5 C6 N1 H6 180.0 180.0
C6 N1 C2 N3 0.1 0.3
C6 N1 C2 N10 180.1 179.9
H6 C6 C5 N7 359.4 0.0
C5 C6 H6 N1 180.0 180.0
H6 C6 N1 C2 180.2 179.9
C4 N3 C2 N1 359.7 359.4
C2 N1 C6 H6 180.2 179.9
N3 C2 N1 N10 179.9 180.4
N1 C2 N10 H101 180.0 0.1
N1 C2 N10 H102 54.7 179.8
C2 N3 C4 N9 180.6 180.2
N1 C2 N3 N10 180.1 179.6
N3 C2 N10 H101 0.1 179.7
N3 C2 N10 H102 234.8 359.4
N1 C2 N10 N3 179.9 180.4
H101 N10 C2 H102 125.3 180.4
C5 N7 C8 N9 359.2 0.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C1' 181.2 180.0
C5 N7 C8 C1' 178.0 180.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C1' O4' 184.3 331.6
C8 N7 C1' C2' 303.0 89.9
C8 N7 C1' H1' 61.8 210.7
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C1' 1.2 360.0
C5 N7 C1' C8 182.5 180.0
C1' N7 C8 H8 1.2 360.0
C4' O4' C1' N7 119.8 117.8
O4' C1' N7 C2' 241.4 241.7
O4' C1' N7 H1' 122.5 120.9
C3' C2' C1' N7 267.4 219.2
O2' C2' C1' N7 29.6 337.4
N7 C1' C2' H2' 145.2 101.0
C2' C1' N7 H1' 241.1 239.1
C2 N10 H101 H102 234.8 179.6
C2 N10 H102 H101 131.4 180.4
O2P P O1P O3P 120.8 120.0
O2P P O1P O5' 241.3 240.0
O1P P O2P HOP2 180.0 300.0
O3P P O1P O5' 120.4 120.0
O1P P O3P HOP3 180.0 180.0
O1P P O5' C5' 56.5 60.0
O1P P O2P O3P 239.2 240.1
O1P P O2P O5' 118.2 120.0
O3P P O2P O5' 239.1 239.9
O2P P O3P HOP3 57.2 60.0
O2P P O5' C5' 177.8 180.0
O1P P O3P O2P 122.8 119.9
O1P P O3P O5' 241.9 240.1
O2P P O3P O5' 119.1 120.1
O3P P O2P HOP2 300.8 59.9
O3P P O5' C5' 297.4 300.1
O1P P O5' O2P 238.7 240.0
O1P P O5' O3P 119.1 119.9
O2P P O5' O3P 240.4 239.9
O5' P O2P HOP2 61.7 180.0
O5' P O3P HOP3 298.1 299.9
P O5' C5' C4' 102.8 180.0
P O5' C5' H5'1 228.1 60.0
P O5' C5' H5'2 337.4 299.9
HOP2 O2P P O3P 300.8 59.9
HOP2 O2P P O5' 61.7 180.0
HOP3 O3P P O5' 298.1 299.9
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 60.8 61.4
O5' C5' C4' C3' 179.9 177.3
O5' C5' C4' H4' 298.9 299.4
H5'1 C5' O5' H5'2 250.6 120.0
O5' C5' C4' H5'1 125.3 239.9
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.1
O4' C4' C5' C3' 240.9 244.2
O4' C4' C5' H4' 121.9 122.0
C5' C4' O4' C1' 106.7 143.5
C3' C4' C5' H4' 241.0 237.9
C5' C4' C3' O3' 153.1 86.6
C5' C4' C3' C2' 272.3 204.7
C5' C4' C3' H3' 36.0 322.4
O5' C5' H5'1 C4' 236.5 120.1
O5' C5' H5'1 H5'2 118.2 239.9
C4' C5' H5'1 H5'2 241.7 119.9
H5'1 C5' C4' O4' 295.6 181.5
H5'1 C5' C4' C3' 54.7 297.3
H5'1 C5' C4' H4' 173.7 59.5
O5' C5' H5'2 C4' 123.5 240.0
O5' C5' H5'2 H5'1 241.8 120.1
C4' C5' H5'2 H5'1 118.3 240.1
H5'2 C5' C4' O4' 186.1 301.4
H5'2 C5' C4' C3' 305.2 57.2
H5'2 C5' C4' H4' 64.2 179.4
N7 C1' O4' C4' 119.8 117.8
O4' C4' C5' H5'1 295.6 181.5
O4' C4' C5' H5'2 186.1 301.4
C5' C4' O4' C3' 126.6 119.1
C5' C4' O4' H4' 246.6 238.0
C3' C4' O4' H4' 119.9 118.9
O4' C4' C3' O3' 277.4 205.6
O4' C4' C3' C2' 36.6 323.6
O4' C4' C3' H3' 160.2 81.4
C4' O4' C1' C2' 354.4 358.2
C4' O4' C1' H1' 235.1 238.7
C3' C4' C5' H5'1 54.7 297.3
C3' C4' C5' H5'2 305.2 57.2
C5' C4' C3' O4' 235.7 241.0
C5' C4' C3' H4' 113.2 122.1
O4' C4' C3' H4' 237.5 241.1
C3' C4' O4' C1' 340.0 24.4
O3' C3' C4' C2' 240.8 242.0
O3' C3' C4' H3' 117.1 124.2
C4' C3' O3' HO'3 180.0 180.0
C2' C3' C4' H3' 236.3 242.2
C4' C3' C2' O2' 195.6 275.7
C4' C3' C2' C1' 319.5 34.0
C4' C3' C2' H2' 79.9 152.3
H4' C4' C5' H5'1 173.7 59.5
H4' C4' C5' H5'2 64.2 179.4
C5' C4' H4' O4' 120.9 122.0
C5' C4' H4' C3' 236.6 237.8
O4' C4' H4' C3' 115.7 115.8
H4' C4' O4' C1' 220.1 265.5
H4' C4' C3' O3' 39.9 324.5
H4' C4' C3' C2' 159.1 82.6
H4' C4' C3' H3' 282.8 200.3
N7 C1' O4' C2' 125.3 119.6
N7 C1' O4' H1' 244.6 239.1
C1' O4' C4' C3' 340.0 24.4
C1' O4' C4' H4' 220.1 265.5
C3' C2' C1' O4' 29.5 338.8
O2' C2' C1' O4' 151.7 97.0
O4' C1' C2' H2' 267.4 220.6
C2' C1' O4' H1' 119.3 119.5
O3' C3' C4' H4' 39.9 324.5
C4' C3' O3' C2' 112.1 111.7
C4' C3' O3' H3' 236.4 235.8
C2' C3' O3' H3' 124.3 124.1
O3' C3' C2' O2' 315.6 33.7
O3' C3' C2' C1' 79.5 152.0
O3' C3' C2' H2' 199.9 270.3
N7 C1' C2' C3' 267.4 219.2
C2' C3' C4' H4' 159.1 82.6
C4' C3' C2' O3' 239.9 242.0
C4' C3' C2' H3' 122.9 117.8
O4' C1' C2' C3' 29.5 338.8
O3' C3' C2' H3' 243.0 235.9
C2' C3' O3' HO'3 67.9 68.4
O2' C2' C3' C1' 236.1 241.7
O2' C2' C3' H2' 115.7 123.4
C3' C2' O2' HO'2 180.0 298.6
C1' C2' C3' H2' 239.6 241.7
C3' C2' C1' H1' 152.2 98.3
H3' C3' C4' H4' 282.8 200.3
C4' C3' H3' O3' 122.9 124.3
C4' C3' H3' C2' 245.0 248.5
O3' C3' H3' C2' 122.0 124.2
H3' C3' O3' HO'3 303.7 304.3
H3' C3' C2' O2' 72.7 157.9
H3' C3' C2' C1' 196.6 276.1
H3' C3' C2' H2' 317.0 34.5
HO'3 O3' C3' C2' 67.9 68.4
HO'3 O3' C3' H3' 303.7 304.3
N7 C1' C2' O2' 29.6 337.4
O4' C1' C2' O2' 151.7 97.0
O2' C2' C3' H3' 72.7 157.9
C3' C2' O2' C1' 117.9 112.8
C3' C2' O2' H2' 238.0 236.6
C1' C2' O2' H2' 120.1 123.8
O2' C2' C1' H1' 274.4 216.5
N7 C1' C2' O4' 237.9 240.4
N7 C1' C2' H1' 115.2 120.8
O4' C1' C2' H1' 237.3 240.5
C1' C2' C3' H3' 196.6 276.1
C3' C2' C1' O2' 237.7 241.8
C3' C2' C1' H2' 122.1 118.2
O2' C2' C1' H2' 244.4 236.4
C1' C2' O2' HO'2 62.1 185.8
H2' C2' C3' H3' 317.0 34.5
C3' C2' H2' O2' 120.9 123.4
C3' C2' H2' C1' 243.5 247.2
O2' C2' H2' C1' 122.6 123.7
H2' C2' O2' HO'2 302.0 62.0
H2' C2' C1' H1' 30.1 340.1
HO'2 O2' C2' C1' 62.1 185.8
HO'2 O2' C2' H2' 302.0 62.0
N7 C1' H1' O4' 120.1 120.9
N7 C1' H1' C2' 236.6 239.2
O4' C1' H1' C2' 116.5 118.2
H1' C1' C2' H2' 30.1 340.1