PDB Chemical Component 7R1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7R1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
C8 |
1.388 |
1.382 |
| C7 |
C6 |
1.378 |
1.381 |
| C8 |
C9 |
1.379 |
1.388 |
| C12 |
C9 |
1.365 |
1.386 |
| C12 |
C13 |
1.359 |
1.387 |
| C6 |
C13 |
1.364 |
1.387 |
| C6 |
C5 |
1.500 |
1.507 |
| C9 |
O10 |
1.381 |
1.359 |
| C13 |
O14 |
1.336 |
1.359 |
| C2 |
C3 |
1.499 |
1.513 |
| C2 |
N16 |
1.347 |
1.322 |
| C2 |
O1 |
1.215 |
1.212 |
| C17 |
N16 |
1.340 |
1.335 |
| C17 |
S18 |
1.652 |
1.712 |
| C17 |
S4 |
1.745 |
1.773 |
| C3 |
C5 |
1.524 |
1.529 |
| C3 |
S4 |
1.792 |
1.825 |
| C11 |
O10 |
1.432 |
1.429 |
| C15 |
O14 |
1.404 |
1.428 |
| C7 |
H1 |
1.080 |
1.080 |
| C8 |
H2 |
1.080 |
1.080 |
| C12 |
H3 |
1.080 |
1.080 |
| C3 |
H4 |
1.100 |
1.090 |
| C11 |
H5 |
1.100 |
1.090 |
| C11 |
H6 |
1.101 |
1.090 |
| C11 |
H7 |
1.100 |
1.089 |
| C15 |
H8 |
1.100 |
1.089 |
| C15 |
H9 |
1.100 |
1.090 |
| C15 |
H10 |
1.100 |
1.090 |
| C5 |
H11 |
1.100 |
1.091 |
| C5 |
H12 |
1.099 |
1.090 |
| N16 |
H13 |
1.000 |
0.970 |
Bond Angles for 7R1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
C6 |
120.9 |
120.1 |
| C7 |
C8 |
C9 |
119.2 |
120.0 |
| C8 |
C7 |
H1 |
119.6 |
119.9 |
| C7 |
C8 |
H2 |
120.4 |
120.0 |
| C7 |
C6 |
C13 |
116.8 |
120.1 |
| C7 |
C6 |
C5 |
126.5 |
120.0 |
| C6 |
C7 |
H1 |
119.5 |
120.0 |
| C8 |
C9 |
C12 |
120.8 |
120.0 |
| C8 |
C9 |
O10 |
124.6 |
120.0 |
| C9 |
C8 |
H2 |
120.4 |
120.0 |
| C9 |
C12 |
C13 |
117.8 |
119.9 |
| C12 |
C9 |
O10 |
114.6 |
120.0 |
| C9 |
C12 |
H3 |
121.1 |
120.1 |
| C12 |
C13 |
C6 |
124.5 |
119.9 |
| C12 |
C13 |
O14 |
120.1 |
120.0 |
| C13 |
C12 |
H3 |
121.1 |
120.0 |
| C13 |
C6 |
C5 |
116.7 |
119.9 |
| C6 |
C13 |
O14 |
115.5 |
120.1 |
| C6 |
C5 |
C3 |
110.5 |
109.5 |
| C6 |
C5 |
H11 |
109.2 |
109.5 |
| C6 |
C5 |
H12 |
109.2 |
109.5 |
| C9 |
O10 |
C11 |
110.8 |
117.0 |
| C13 |
O14 |
C15 |
86.3 |
117.0 |
| C3 |
C2 |
N16 |
117.0 |
113.8 |
| C3 |
C2 |
O1 |
120.3 |
123.1 |
| C2 |
C3 |
C5 |
110.3 |
110.7 |
| C2 |
C3 |
S4 |
104.3 |
103.0 |
| C2 |
C3 |
H4 |
110.5 |
110.7 |
| N16 |
C2 |
O1 |
122.7 |
123.1 |
| C2 |
N16 |
C17 |
112.1 |
121.3 |
| C2 |
N16 |
H13 |
123.9 |
119.4 |
| N16 |
C17 |
S18 |
126.1 |
126.1 |
| N16 |
C17 |
S4 |
114.9 |
107.7 |
| C17 |
N16 |
H13 |
124.0 |
119.4 |
| S18 |
C17 |
S4 |
118.8 |
126.2 |
| C17 |
S4 |
C3 |
91.5 |
94.3 |
| C5 |
C3 |
S4 |
114.3 |
110.7 |
| C5 |
C3 |
H4 |
110.2 |
110.7 |
| C3 |
C5 |
H11 |
109.2 |
109.5 |
| C3 |
C5 |
H12 |
109.2 |
109.5 |
| S4 |
C3 |
H4 |
107.1 |
110.8 |
| O10 |
C11 |
H5 |
109.5 |
109.5 |
| O10 |
C11 |
H6 |
109.5 |
109.4 |
| O10 |
C11 |
H7 |
109.5 |
109.5 |
| O14 |
C15 |
H8 |
109.5 |
109.5 |
| O14 |
C15 |
H9 |
109.5 |
109.5 |
| O14 |
C15 |
H10 |
109.5 |
109.5 |
| H5 |
C11 |
H6 |
109.5 |
109.5 |
| H5 |
C11 |
H7 |
109.5 |
109.4 |
| H6 |
C11 |
H7 |
109.5 |
109.5 |
| H8 |
C15 |
H9 |
109.5 |
109.5 |
| H8 |
C15 |
H10 |
109.4 |
109.4 |
| H9 |
C15 |
H10 |
109.5 |
109.4 |
| H11 |
C5 |
H12 |
109.5 |
109.5 |
Torsion Angles for 7R1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
C6 |
C13 |
358.4 |
0.0 |
| C8 |
C7 |
C6 |
C5 |
180.6 |
180.0 |
| C6 |
C7 |
C8 |
H1 |
180.0 |
180.2 |
| C7 |
C8 |
C9 |
C12 |
0.9 |
0.1 |
| C7 |
C8 |
C9 |
O10 |
180.5 |
180.0 |
| C9 |
C8 |
C7 |
H2 |
180.0 |
179.9 |
| C6 |
C7 |
C8 |
C9 |
0.3 |
359.9 |
| C8 |
C7 |
C6 |
H1 |
180.0 |
179.8 |
| C6 |
C7 |
C8 |
H2 |
180.2 |
180.0 |
| C12 |
C13 |
C6 |
C7 |
1.8 |
360.0 |
| C13 |
C6 |
C7 |
C5 |
177.8 |
180.0 |
| C7 |
C6 |
C13 |
O14 |
180.1 |
180.0 |
| C7 |
C6 |
C5 |
C3 |
90.8 |
265.0 |
| C7 |
C6 |
C5 |
H11 |
211.0 |
25.0 |
| C7 |
C6 |
C5 |
H12 |
330.7 |
145.0 |
| C9 |
C8 |
C7 |
C6 |
0.3 |
359.9 |
| C9 |
C8 |
C7 |
H1 |
180.3 |
179.8 |
| C7 |
C8 |
C9 |
H2 |
180.0 |
180.1 |
| C8 |
C9 |
C12 |
C13 |
359.3 |
360.0 |
| C12 |
C9 |
C8 |
O10 |
180.4 |
180.1 |
| C8 |
C9 |
C12 |
H3 |
179.3 |
179.9 |
| C8 |
C9 |
O10 |
C11 |
350.1 |
0.0 |
| C8 |
C9 |
C12 |
O10 |
179.6 |
179.9 |
| C12 |
C9 |
C8 |
H2 |
180.9 |
180.0 |
| C9 |
C12 |
C13 |
C6 |
359.3 |
0.0 |
| C9 |
C12 |
C13 |
O14 |
181.1 |
180.0 |
| C13 |
C12 |
C9 |
H3 |
180.0 |
180.1 |
| C12 |
C9 |
O10 |
C11 |
169.7 |
180.0 |
| C7 |
C6 |
C13 |
C12 |
1.8 |
360.0 |
| C13 |
C12 |
C9 |
O10 |
179.6 |
180.0 |
| C9 |
C12 |
C13 |
H3 |
180.0 |
179.9 |
| C12 |
C13 |
C6 |
C5 |
179.9 |
180.0 |
| C6 |
C13 |
C12 |
O14 |
178.2 |
180.0 |
| C12 |
C13 |
O14 |
C15 |
101.5 |
359.9 |
| C7 |
C6 |
C13 |
C5 |
182.0 |
180.0 |
| C13 |
C6 |
C7 |
H1 |
178.5 |
180.2 |
| C12 |
C13 |
C6 |
O14 |
181.7 |
180.0 |
| C6 |
C13 |
C12 |
H3 |
179.3 |
180.1 |
| C13 |
C6 |
C5 |
C3 |
273.0 |
85.0 |
| C13 |
C6 |
C5 |
H11 |
33.2 |
205.0 |
| C13 |
C6 |
C5 |
H12 |
152.8 |
325.0 |
| C6 |
C13 |
O14 |
C15 |
283.2 |
179.9 |
| C7 |
C6 |
C5 |
C13 |
177.8 |
180.0 |
| C5 |
C6 |
C7 |
H1 |
0.6 |
0.2 |
| C5 |
C6 |
C13 |
O14 |
358.1 |
360.0 |
| C2 |
C3 |
C5 |
C6 |
168.2 |
185.0 |
| C6 |
C5 |
C3 |
S4 |
51.1 |
71.4 |
| C6 |
C5 |
C3 |
H4 |
290.5 |
308.1 |
| C3 |
C5 |
C6 |
H11 |
239.8 |
240.0 |
| C3 |
C5 |
C6 |
H12 |
120.2 |
120.0 |
| H11 |
C5 |
C6 |
H12 |
240.3 |
240.0 |
| C8 |
C9 |
O10 |
C12 |
180.4 |
180.1 |
| O10 |
C9 |
C8 |
H2 |
0.5 |
359.9 |
| O10 |
C9 |
C12 |
C13 |
179.6 |
180.0 |
| O10 |
C9 |
C12 |
H3 |
359.6 |
360.0 |
| C9 |
O10 |
C11 |
H5 |
180.0 |
300.0 |
| C9 |
O10 |
C11 |
H6 |
300.0 |
60.0 |
| C9 |
O10 |
C11 |
H7 |
60.0 |
180.0 |
| C12 |
C13 |
O14 |
C6 |
178.3 |
180.0 |
| O14 |
C13 |
C12 |
H3 |
1.1 |
0.1 |
| O14 |
C13 |
C6 |
C5 |
358.1 |
360.0 |
| C13 |
O14 |
C15 |
H8 |
180.0 |
300.0 |
| C13 |
O14 |
C15 |
H9 |
300.0 |
60.1 |
| C13 |
O14 |
C15 |
H10 |
60.0 |
180.0 |
| C6 |
C5 |
C3 |
C2 |
168.2 |
185.0 |
| N16 |
C2 |
C3 |
O1 |
179.1 |
180.3 |
| C3 |
C2 |
N16 |
C17 |
359.5 |
0.0 |
| C3 |
C2 |
N16 |
H13 |
179.5 |
180.0 |
| C17 |
S4 |
C3 |
C2 |
356.1 |
360.0 |
| C5 |
C3 |
C2 |
S4 |
236.9 |
241.6 |
| C5 |
C3 |
C2 |
H4 |
122.1 |
123.2 |
| C2 |
C3 |
C5 |
H11 |
48.1 |
65.0 |
| C2 |
C3 |
C5 |
H12 |
288.4 |
305.0 |
| S4 |
C3 |
C2 |
H4 |
245.3 |
241.5 |
| C3 |
C2 |
N16 |
O1 |
180.9 |
179.7 |
| N16 |
C2 |
C3 |
C5 |
240.2 |
241.6 |
| N16 |
C2 |
C3 |
S4 |
3.3 |
0.0 |
| N16 |
C2 |
C3 |
H4 |
118.1 |
118.5 |
| C2 |
N16 |
C17 |
S18 |
181.8 |
180.0 |
| C2 |
N16 |
C17 |
S4 |
357.1 |
360.0 |
| C17 |
N16 |
C2 |
H13 |
180.0 |
180.0 |
| C3 |
C2 |
O1 |
N16 |
179.1 |
180.3 |
| O1 |
C2 |
C3 |
C5 |
61.1 |
61.3 |
| O1 |
C2 |
C3 |
S4 |
184.2 |
179.7 |
| O1 |
C2 |
C3 |
H4 |
299.0 |
298.2 |
| O1 |
C2 |
N16 |
C17 |
178.6 |
180.3 |
| O1 |
C2 |
N16 |
H13 |
358.6 |
0.3 |
| C17 |
N16 |
C2 |
O1 |
178.6 |
180.3 |
| C2 |
N16 |
C17 |
H13 |
180.0 |
180.0 |
| S18 |
C17 |
N16 |
S4 |
184.6 |
180.0 |
| N16 |
C17 |
S4 |
C3 |
4.2 |
0.0 |
| N16 |
C17 |
S18 |
S4 |
175.2 |
179.9 |
| S18 |
C17 |
N16 |
H13 |
1.8 |
0.0 |
| S18 |
C17 |
S4 |
C3 |
179.9 |
180.0 |
| C2 |
C3 |
S4 |
C17 |
356.1 |
360.0 |
| N16 |
C17 |
S4 |
S18 |
184.3 |
180.0 |
| S4 |
C17 |
N16 |
H13 |
177.1 |
180.0 |
| C5 |
C3 |
S4 |
C17 |
116.6 |
118.4 |
| C17 |
S4 |
C3 |
H4 |
239.0 |
241.6 |
| C6 |
C5 |
C3 |
H11 |
120.1 |
120.0 |
| C6 |
C5 |
C3 |
H12 |
239.8 |
240.0 |
| C5 |
C3 |
C2 |
N16 |
240.2 |
241.6 |
| C5 |
C3 |
C2 |
O1 |
61.1 |
61.3 |
| C2 |
C3 |
C5 |
S4 |
117.1 |
113.6 |
| C2 |
C3 |
C5 |
H4 |
237.7 |
236.9 |
| C17 |
S4 |
C3 |
C5 |
116.6 |
118.4 |
| S4 |
C3 |
C5 |
H4 |
120.6 |
123.3 |
| H11 |
C5 |
C3 |
H12 |
119.7 |
120.0 |
| S4 |
C3 |
C2 |
N16 |
3.3 |
0.0 |
| S4 |
C3 |
C2 |
O1 |
184.2 |
179.7 |
| C2 |
C3 |
S4 |
C5 |
239.5 |
241.6 |
| C2 |
C3 |
S4 |
H4 |
117.2 |
118.4 |
| C5 |
C3 |
S4 |
H4 |
237.6 |
236.8 |
| S4 |
C3 |
C5 |
H11 |
291.0 |
311.4 |
| S4 |
C3 |
C5 |
H12 |
171.3 |
191.4 |
| H5 |
C11 |
O10 |
H6 |
240.0 |
240.0 |
| H5 |
C11 |
O10 |
H7 |
120.0 |
120.0 |
| H6 |
C11 |
O10 |
H7 |
240.0 |
240.0 |
| H8 |
C15 |
O14 |
H9 |
240.0 |
240.0 |
| H8 |
C15 |
O14 |
H10 |
120.0 |
120.0 |
| H9 |
C15 |
O14 |
H10 |
240.0 |
240.1 |
| C8 |
C7 |
H1 |
C6 |
180.0 |
180.2 |
| H1 |
C7 |
C8 |
C9 |
180.3 |
179.8 |
| H1 |
C7 |
C8 |
H2 |
0.2 |
359.8 |
| H1 |
C7 |
C6 |
C13 |
178.5 |
180.2 |
| H1 |
C7 |
C6 |
C5 |
0.6 |
0.2 |
| H2 |
C8 |
C7 |
C6 |
180.2 |
180.0 |
| C7 |
C8 |
H2 |
C9 |
180.0 |
179.9 |
| H2 |
C8 |
C7 |
H1 |
0.2 |
359.8 |
| H2 |
C8 |
C9 |
C12 |
180.9 |
180.0 |
| H2 |
C8 |
C9 |
O10 |
0.5 |
359.9 |
| C9 |
C12 |
H3 |
C13 |
180.0 |
180.1 |
| H3 |
C12 |
C9 |
O10 |
359.6 |
360.0 |
| H3 |
C12 |
C13 |
C6 |
179.3 |
180.1 |
| H3 |
C12 |
C13 |
O14 |
1.1 |
0.1 |
| H4 |
C3 |
C2 |
N16 |
118.1 |
118.5 |
| H4 |
C3 |
C2 |
O1 |
299.0 |
298.2 |
| C2 |
C3 |
H4 |
C5 |
122.1 |
123.2 |
| C2 |
C3 |
H4 |
S4 |
247.0 |
246.4 |
| C5 |
C3 |
H4 |
S4 |
124.9 |
123.2 |
| H4 |
C3 |
C5 |
H11 |
170.4 |
188.1 |
| H4 |
C3 |
C5 |
H12 |
50.7 |
68.1 |
| O10 |
C11 |
H5 |
H6 |
120.0 |
120.0 |
| O10 |
C11 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
C11 |
H5 |
H7 |
120.0 |
120.0 |
| O10 |
C11 |
H6 |
H5 |
240.0 |
240.0 |
| O10 |
C11 |
H6 |
H7 |
120.0 |
120.1 |
| H5 |
C11 |
H6 |
H7 |
240.0 |
240.0 |
| O10 |
C11 |
H7 |
H5 |
120.0 |
120.0 |
| O10 |
C11 |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
C11 |
H7 |
H6 |
120.0 |
120.0 |
| O14 |
C15 |
H8 |
H9 |
120.0 |
120.1 |
| O14 |
C15 |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C15 |
H8 |
H10 |
120.0 |
119.9 |
| O14 |
C15 |
H9 |
H8 |
240.0 |
239.9 |
| O14 |
C15 |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
C15 |
H9 |
H10 |
240.0 |
240.1 |
| O14 |
C15 |
H10 |
H8 |
120.0 |
120.1 |
| O14 |
C15 |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
C15 |
H10 |
H9 |
120.0 |
119.9 |
| C6 |
C5 |
H11 |
C3 |
239.0 |
240.0 |
| C6 |
C5 |
H11 |
H12 |
119.5 |
120.0 |
| H11 |
C5 |
C3 |
S4 |
291.0 |
311.4 |
| H11 |
C5 |
C3 |
H4 |
170.4 |
188.1 |
| C3 |
C5 |
H11 |
H12 |
240.5 |
240.0 |
| C6 |
C5 |
H12 |
C3 |
121.0 |
120.0 |
| C6 |
C5 |
H12 |
H11 |
240.5 |
240.0 |
| H12 |
C5 |
C3 |
S4 |
171.3 |
191.4 |
| H12 |
C5 |
C3 |
H4 |
50.7 |
68.1 |
| C3 |
C5 |
H12 |
H11 |
119.5 |
120.0 |
| H13 |
N16 |
C2 |
O1 |
358.6 |
0.3 |
| C2 |
N16 |
H13 |
C17 |
180.0 |
180.0 |
| H13 |
N16 |
C17 |
S18 |
1.8 |
0.0 |
| H13 |
N16 |
C17 |
S4 |
177.1 |
180.0 |