Atom Nomenclature for 7OA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7OA

Atom Name (V3) Atom Name (V2)
C06 C1
C07 C2
C08 C3
C1 C4
C10 C5
C11 C6
C12 C7
C13 C8
C14 C9
C15 C10
C16 C11
C17 C12
C19 C13
C2 C14
C21 C15
C29 C16
C3 C17
C32 C18
C33 C19
C34 C20
C35 C21
C36 C22
C39 C23
C4 C24
C49 C25
C5 C26
C59 C27
C6 C28
C69 C29
C7 C30
C79 C31
C8 C32
C9 C33
F1 F1
F2 F2
N1 N1
N11 N2
N2 N3
N20 N4
O1 O1
O10 O2
O18 O3
O2 O4
O22 O5
O23 O6
O9 O7
S1 S1
S8 S2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H38 H38
H39 H39
H40 H40
H42 H42