Atom Nomenclature for 7O2

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7O2

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C6 C4
N11 N1
C15 C5
C16 C6
C17 C7
C18 C8
C4 C9
C5 C10
C7 C11
C8 C12
C9 C13
P12 P1
O13 O1
O14 O2
C19 C14
C20 C15
C21 C16
C22 C17
C23 C18
C24 C19
C25 C20
C26 C21
C27 C22
C28 C23
C29 C24
C30 C25
C31 C26
O32 O3
N33 N2
C34 C27
C35 C28
C36 C29
C37 C30
C38 C31
C39 C32
C40 C33
C41 C34
C42 C35
N43 N3
O44 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41